###################################
205 groups of orthologs
228 in-paralogs from P.aerophilum
250 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 765 bits
Score difference with first non-orthologous sequence - P.aerophilum:765 P.jiroveci:333

Q8ZYQ9              	100.00%		L0PG77              	100.00%
Bootstrap support for Q8ZYQ9 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #2. Best score 618 bits
Score difference with first non-orthologous sequence - P.aerophilum:618 P.jiroveci:618

Q8ZYQ8              	100.00%		L0PB43              	100.00%
                    	       		L0PB90              	6.78%
Bootstrap support for Q8ZYQ8 as seed ortholog is 100%.
Bootstrap support for L0PB43 as seed ortholog is 100%.

Group of orthologs #3. Best score 487 bits
Score difference with first non-orthologous sequence - P.aerophilum:487 P.jiroveci:377

Q8ZYR1              	100.00%		L0PH89              	100.00%
Bootstrap support for Q8ZYR1 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #4. Best score 448 bits
Score difference with first non-orthologous sequence - P.aerophilum:448 P.jiroveci:448

Q8ZVC5              	100.00%		L0PDF1              	100.00%
Bootstrap support for Q8ZVC5 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #5. Best score 440 bits
Score difference with first non-orthologous sequence - P.aerophilum:372 P.jiroveci:133

O93729              	100.00%		L0PBA5              	100.00%
Bootstrap support for O93729 as seed ortholog is 100%.
Bootstrap support for L0PBA5 as seed ortholog is 99%.

Group of orthologs #6. Best score 437 bits
Score difference with first non-orthologous sequence - P.aerophilum:437 P.jiroveci:437

Q8ZSY7              	100.00%		L0PC65              	100.00%
Bootstrap support for Q8ZSY7 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #7. Best score 386 bits
Score difference with first non-orthologous sequence - P.aerophilum:386 P.jiroveci:386

Q8ZT92              	100.00%		L0PAQ1              	100.00%
Bootstrap support for Q8ZT92 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #8. Best score 382 bits
Score difference with first non-orthologous sequence - P.aerophilum:382 P.jiroveci:8

Q8ZTF8              	100.00%		L0P976              	100.00%
Q8ZVU7              	30.76%		
Bootstrap support for Q8ZTF8 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 56%.
Alternative seed ortholog is L0PGA5 (8 bits away from this cluster)

Group of orthologs #9. Best score 379 bits
Score difference with first non-orthologous sequence - P.aerophilum:379 P.jiroveci:15

Q8ZY88              	100.00%		L0PG32              	100.00%
Bootstrap support for Q8ZY88 as seed ortholog is 100%.
Bootstrap support for L0PG32 as seed ortholog is 64%.
Alternative seed ortholog is L0PD31 (15 bits away from this cluster)

Group of orthologs #10. Best score 357 bits
Score difference with first non-orthologous sequence - P.aerophilum:357 P.jiroveci:265

Q8ZXT6              	100.00%		L0P915              	100.00%
Bootstrap support for Q8ZXT6 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 99%.

Group of orthologs #11. Best score 351 bits
Score difference with first non-orthologous sequence - P.aerophilum:351 P.jiroveci:351

Q8ZX20              	100.00%		L0PEP7              	100.00%
Bootstrap support for Q8ZX20 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #12. Best score 347 bits
Score difference with first non-orthologous sequence - P.aerophilum:347 P.jiroveci:115

Q8ZZC1              	100.00%		L0PBE4              	100.00%
Bootstrap support for Q8ZZC1 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 98%.

Group of orthologs #13. Best score 334 bits
Score difference with first non-orthologous sequence - P.aerophilum:334 P.jiroveci:334

Q8ZY71              	100.00%		L0PFF9              	100.00%
Bootstrap support for Q8ZY71 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #14. Best score 332 bits
Score difference with first non-orthologous sequence - P.aerophilum:332 P.jiroveci:178

Q8ZUJ0              	100.00%		L0PGH3              	100.00%
Bootstrap support for Q8ZUJ0 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 99%.

Group of orthologs #15. Best score 312 bits
Score difference with first non-orthologous sequence - P.aerophilum:312 P.jiroveci:312

Q8ZTZ0              	100.00%		L0PAS8              	100.00%
Bootstrap support for Q8ZTZ0 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #16. Best score 312 bits
Score difference with first non-orthologous sequence - P.aerophilum:312 P.jiroveci:312

Q8ZTQ7              	100.00%		L0PDJ1              	100.00%
Bootstrap support for Q8ZTQ7 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #17. Best score 290 bits
Score difference with first non-orthologous sequence - P.aerophilum:93 P.jiroveci:290

Q8ZXL3              	100.00%		L0PA09              	100.00%
Bootstrap support for Q8ZXL3 as seed ortholog is 99%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #18. Best score 282 bits
Score difference with first non-orthologous sequence - P.aerophilum:282 P.jiroveci:29

Q8ZWU4              	100.00%		L0PBQ6              	100.00%
Bootstrap support for Q8ZWU4 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 57%.
Alternative seed ortholog is L0PCD8 (29 bits away from this cluster)

Group of orthologs #19. Best score 274 bits
Score difference with first non-orthologous sequence - P.aerophilum:274 P.jiroveci:274

Q8ZVI3              	100.00%		L0PA45              	100.00%
Bootstrap support for Q8ZVI3 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #20. Best score 270 bits
Score difference with first non-orthologous sequence - P.aerophilum:270 P.jiroveci:157

Q8ZXR2              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	68.32%
Bootstrap support for Q8ZXR2 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #21. Best score 268 bits
Score difference with first non-orthologous sequence - P.aerophilum:268 P.jiroveci:175

Q8ZWD4              	100.00%		L0PFG7              	100.00%
Bootstrap support for Q8ZWD4 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 99%.

Group of orthologs #22. Best score 262 bits
Score difference with first non-orthologous sequence - P.aerophilum:262 P.jiroveci:262

O93723              	100.00%		L0PFQ5              	100.00%
Bootstrap support for O93723 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #23. Best score 260 bits
Score difference with first non-orthologous sequence - P.aerophilum:149 P.jiroveci:73

Q8ZU29              	100.00%		L0PEL0              	100.00%
Bootstrap support for Q8ZU29 as seed ortholog is 99%.
Bootstrap support for L0PEL0 as seed ortholog is 94%.

Group of orthologs #24. Best score 259 bits
Score difference with first non-orthologous sequence - P.aerophilum:259 P.jiroveci:259

Q8ZU12              	100.00%		L0P8R6              	100.00%
Bootstrap support for Q8ZU12 as seed ortholog is 100%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #25. Best score 256 bits
Score difference with first non-orthologous sequence - P.aerophilum:256 P.jiroveci:256

Q8ZYD8              	100.00%		L0PC44              	100.00%
Bootstrap support for Q8ZYD8 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #26. Best score 252 bits
Score difference with first non-orthologous sequence - P.aerophilum:163 P.jiroveci:252

Q8ZVV2              	100.00%		L0PDK3              	100.00%
Bootstrap support for Q8ZVV2 as seed ortholog is 99%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #27. Best score 248 bits
Score difference with first non-orthologous sequence - P.aerophilum:75 P.jiroveci:248

Q8ZUR5              	100.00%		L0P7Y5              	100.00%
Bootstrap support for Q8ZUR5 as seed ortholog is 92%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #28. Best score 247 bits
Score difference with first non-orthologous sequence - P.aerophilum:247 P.jiroveci:40

Q8ZXI3              	100.00%		L0PAR8              	100.00%
Bootstrap support for Q8ZXI3 as seed ortholog is 100%.
Bootstrap support for L0PAR8 as seed ortholog is 81%.

Group of orthologs #29. Best score 247 bits
Score difference with first non-orthologous sequence - P.aerophilum:247 P.jiroveci:247

Q8ZVF2              	100.00%		L0PGA8              	100.00%
Bootstrap support for Q8ZVF2 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #30. Best score 246 bits
Score difference with first non-orthologous sequence - P.aerophilum:246 P.jiroveci:246

Q8ZV75              	100.00%		L0PA23              	100.00%
Bootstrap support for Q8ZV75 as seed ortholog is 100%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #31. Best score 245 bits
Score difference with first non-orthologous sequence - P.aerophilum:134 P.jiroveci:245

Q8ZYR9              	100.00%		L0PDH7              	100.00%
                    	       		L0PFP2              	11.90%
Bootstrap support for Q8ZYR9 as seed ortholog is 99%.
Bootstrap support for L0PDH7 as seed ortholog is 100%.

Group of orthologs #32. Best score 242 bits
Score difference with first non-orthologous sequence - P.aerophilum:100 P.jiroveci:242

Q8ZT95              	100.00%		L0PFN9              	100.00%
                    	       		L0PEF0              	29.42%
Bootstrap support for Q8ZT95 as seed ortholog is 99%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #33. Best score 239 bits
Score difference with first non-orthologous sequence - P.aerophilum:239 P.jiroveci:239

Q8ZYB3              	100.00%		L0P8W6              	100.00%
Bootstrap support for Q8ZYB3 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #34. Best score 236 bits
Score difference with first non-orthologous sequence - P.aerophilum:236 P.jiroveci:236

Q8ZY49              	100.00%		L0PG02              	100.00%
Bootstrap support for Q8ZY49 as seed ortholog is 100%.
Bootstrap support for L0PG02 as seed ortholog is 100%.

Group of orthologs #35. Best score 235 bits
Score difference with first non-orthologous sequence - P.aerophilum:235 P.jiroveci:89

Q8ZVG2              	100.00%		L0PDB3              	100.00%
                    	       		L0PCU4              	16.88%
Bootstrap support for Q8ZVG2 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 89%.

Group of orthologs #36. Best score 234 bits
Score difference with first non-orthologous sequence - P.aerophilum:234 P.jiroveci:49

Q8ZTP4              	100.00%		L0PAU1              	100.00%
Bootstrap support for Q8ZTP4 as seed ortholog is 100%.
Bootstrap support for L0PAU1 as seed ortholog is 87%.

Group of orthologs #37. Best score 232 bits
Score difference with first non-orthologous sequence - P.aerophilum:232 P.jiroveci:232

Q8ZW54              	100.00%		L0PG19              	100.00%
Bootstrap support for Q8ZW54 as seed ortholog is 100%.
Bootstrap support for L0PG19 as seed ortholog is 100%.

Group of orthologs #38. Best score 224 bits
Score difference with first non-orthologous sequence - P.aerophilum:224 P.jiroveci:121

Q8ZZV4              	100.00%		L0PB35              	100.00%
Bootstrap support for Q8ZZV4 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 99%.

Group of orthologs #39. Best score 223 bits
Score difference with first non-orthologous sequence - P.aerophilum:223 P.jiroveci:38

Q8ZYK4              	100.00%		L0P891              	100.00%
Q8ZWS2              	42.75%		
Bootstrap support for Q8ZYK4 as seed ortholog is 100%.
Bootstrap support for L0P891 as seed ortholog is 86%.

Group of orthologs #40. Best score 213 bits
Score difference with first non-orthologous sequence - P.aerophilum:213 P.jiroveci:213

Q8ZWP0              	100.00%		L0PGU0              	100.00%
Bootstrap support for Q8ZWP0 as seed ortholog is 100%.
Bootstrap support for L0PGU0 as seed ortholog is 100%.

Group of orthologs #41. Best score 212 bits
Score difference with first non-orthologous sequence - P.aerophilum:212 P.jiroveci:212

Q8ZYW5              	100.00%		L0PEY2              	100.00%
Bootstrap support for Q8ZYW5 as seed ortholog is 100%.
Bootstrap support for L0PEY2 as seed ortholog is 100%.

Group of orthologs #42. Best score 210 bits
Score difference with first non-orthologous sequence - P.aerophilum:210 P.jiroveci:210

Q8ZX30              	100.00%		L0PFN4              	100.00%
Bootstrap support for Q8ZX30 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #43. Best score 205 bits
Score difference with first non-orthologous sequence - P.aerophilum:205 P.jiroveci:205

Q8ZWW9              	100.00%		L0PB96              	100.00%
Bootstrap support for Q8ZWW9 as seed ortholog is 100%.
Bootstrap support for L0PB96 as seed ortholog is 100%.

Group of orthologs #44. Best score 203 bits
Score difference with first non-orthologous sequence - P.aerophilum:106 P.jiroveci:72

Q8ZYM8              	100.00%		L0P7R1              	100.00%
Bootstrap support for Q8ZYM8 as seed ortholog is 99%.
Bootstrap support for L0P7R1 as seed ortholog is 96%.

Group of orthologs #45. Best score 203 bits
Score difference with first non-orthologous sequence - P.aerophilum:159 P.jiroveci:203

Q8ZUR7              	100.00%		L0PDT0              	100.00%
Bootstrap support for Q8ZUR7 as seed ortholog is 99%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #46. Best score 202 bits
Score difference with first non-orthologous sequence - P.aerophilum:202 P.jiroveci:202

Q8ZYN2              	100.00%		L0PA00              	100.00%
Bootstrap support for Q8ZYN2 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #47. Best score 196 bits
Score difference with first non-orthologous sequence - P.aerophilum:196 P.jiroveci:146

Q8ZYF5              	100.00%		L0PID0              	100.00%
Bootstrap support for Q8ZYF5 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #48. Best score 190 bits
Score difference with first non-orthologous sequence - P.aerophilum:190 P.jiroveci:190

Q8ZU26              	100.00%		L0PAT1              	100.00%
Bootstrap support for Q8ZU26 as seed ortholog is 100%.
Bootstrap support for L0PAT1 as seed ortholog is 100%.

Group of orthologs #49. Best score 190 bits
Score difference with first non-orthologous sequence - P.aerophilum:190 P.jiroveci:190

Q8ZTI8              	100.00%		L0PHY6              	100.00%
Bootstrap support for Q8ZTI8 as seed ortholog is 100%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #50. Best score 190 bits
Score difference with first non-orthologous sequence - P.aerophilum:190 P.jiroveci:190

Q8ZX61              	100.00%		L0PER3              	100.00%
Bootstrap support for Q8ZX61 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #51. Best score 186 bits
Score difference with first non-orthologous sequence - P.aerophilum:186 P.jiroveci:134

Q8ZW52              	100.00%		L0P9D4              	100.00%
Bootstrap support for Q8ZW52 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 99%.

Group of orthologs #52. Best score 185 bits
Score difference with first non-orthologous sequence - P.aerophilum:185 P.jiroveci:14

Q8ZVM1              	100.00%		L0PB03              	100.00%
Bootstrap support for Q8ZVM1 as seed ortholog is 100%.
Bootstrap support for L0PB03 as seed ortholog is 63%.
Alternative seed ortholog is L0PFU1 (14 bits away from this cluster)

Group of orthologs #53. Best score 185 bits
Score difference with first non-orthologous sequence - P.aerophilum:185 P.jiroveci:185

Q8ZTI9              	100.00%		L0PFQ8              	100.00%
Bootstrap support for Q8ZTI9 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #54. Best score 183 bits
Score difference with first non-orthologous sequence - P.aerophilum:183 P.jiroveci:183

Q8ZYK5              	100.00%		L0PFI8              	100.00%
Bootstrap support for Q8ZYK5 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #55. Best score 177 bits
Score difference with first non-orthologous sequence - P.aerophilum:177 P.jiroveci:177

Q8ZTP7              	100.00%		L0PBY6              	100.00%
Bootstrap support for Q8ZTP7 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #56. Best score 175 bits
Score difference with first non-orthologous sequence - P.aerophilum:175 P.jiroveci:175

Q8ZXA8              	100.00%		L0PC54              	100.00%
Bootstrap support for Q8ZXA8 as seed ortholog is 100%.
Bootstrap support for L0PC54 as seed ortholog is 100%.

Group of orthologs #57. Best score 174 bits
Score difference with first non-orthologous sequence - P.aerophilum:174 P.jiroveci:4

Q8ZUR6              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	64.54%
Bootstrap support for Q8ZUR6 as seed ortholog is 100%.
Bootstrap support for L0PC17 as seed ortholog is 53%.
Alternative seed ortholog is L0PCP3 (4 bits away from this cluster)

Group of orthologs #58. Best score 170 bits
Score difference with first non-orthologous sequence - P.aerophilum:170 P.jiroveci:170

Q8ZYF9              	100.00%		L0PCX1              	100.00%
Bootstrap support for Q8ZYF9 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #59. Best score 168 bits
Score difference with first non-orthologous sequence - P.aerophilum:168 P.jiroveci:168

Q8ZSV6              	100.00%		L0PDQ4              	100.00%
Bootstrap support for Q8ZSV6 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #60. Best score 167 bits
Score difference with first non-orthologous sequence - P.aerophilum:167 P.jiroveci:120

Q8ZYQ4              	100.00%		L0PHL1              	100.00%
Bootstrap support for Q8ZYQ4 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #61. Best score 166 bits
Score difference with first non-orthologous sequence - P.aerophilum:23 P.jiroveci:166

Q8ZW34              	100.00%		L0PCQ8              	100.00%
                    	       		L0PB68              	27.40%
Bootstrap support for Q8ZW34 as seed ortholog is 71%.
Alternative seed ortholog is Q8ZWR8 (23 bits away from this cluster)
Bootstrap support for L0PCQ8 as seed ortholog is 100%.

Group of orthologs #62. Best score 164 bits
Score difference with first non-orthologous sequence - P.aerophilum:164 P.jiroveci:18

Q8ZYG3              	100.00%		L0PG10              	100.00%
Bootstrap support for Q8ZYG3 as seed ortholog is 100%.
Bootstrap support for L0PG10 as seed ortholog is 66%.
Alternative seed ortholog is L0P9R7 (18 bits away from this cluster)

Group of orthologs #63. Best score 162 bits
Score difference with first non-orthologous sequence - P.aerophilum:162 P.jiroveci:162

Q8ZU33              	100.00%		L0PED9              	100.00%
Bootstrap support for Q8ZU33 as seed ortholog is 100%.
Bootstrap support for L0PED9 as seed ortholog is 100%.

Group of orthologs #64. Best score 158 bits
Score difference with first non-orthologous sequence - P.aerophilum:158 P.jiroveci:158

Q8ZV67              	100.00%		L0PIR9              	100.00%
Bootstrap support for Q8ZV67 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #65. Best score 158 bits
Score difference with first non-orthologous sequence - P.aerophilum:158 P.jiroveci:158

Q8ZZK4              	100.00%		L0PE57              	100.00%
Bootstrap support for Q8ZZK4 as seed ortholog is 100%.
Bootstrap support for L0PE57 as seed ortholog is 100%.

Group of orthologs #66. Best score 156 bits
Score difference with first non-orthologous sequence - P.aerophilum:156 P.jiroveci:156

Q8ZYE0              	100.00%		L0PEE3              	100.00%
Bootstrap support for Q8ZYE0 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #67. Best score 155 bits
Score difference with first non-orthologous sequence - P.aerophilum:71 P.jiroveci:63

Q8ZXA2              	100.00%		L0PGL1              	100.00%
Bootstrap support for Q8ZXA2 as seed ortholog is 95%.
Bootstrap support for L0PGL1 as seed ortholog is 90%.

Group of orthologs #68. Best score 154 bits
Score difference with first non-orthologous sequence - P.aerophilum:154 P.jiroveci:154

Q8ZT09              	100.00%		L0P9J7              	100.00%
Bootstrap support for Q8ZT09 as seed ortholog is 100%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #69. Best score 148 bits
Score difference with first non-orthologous sequence - P.aerophilum:148 P.jiroveci:148

Q8ZWZ1              	100.00%		L0PCY5              	100.00%
Bootstrap support for Q8ZWZ1 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #70. Best score 148 bits
Score difference with first non-orthologous sequence - P.aerophilum:148 P.jiroveci:59

Q8ZYL9              	100.00%		L0PD02              	100.00%
Bootstrap support for Q8ZYL9 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 97%.

Group of orthologs #71. Best score 146 bits
Score difference with first non-orthologous sequence - P.aerophilum:146 P.jiroveci:146

Q8ZU56              	100.00%		L0PA88              	100.00%
Bootstrap support for Q8ZU56 as seed ortholog is 100%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #72. Best score 144 bits
Score difference with first non-orthologous sequence - P.aerophilum:144 P.jiroveci:144

Q8ZTS7              	100.00%		L0PFX9              	100.00%
Bootstrap support for Q8ZTS7 as seed ortholog is 100%.
Bootstrap support for L0PFX9 as seed ortholog is 100%.

Group of orthologs #73. Best score 139 bits
Score difference with first non-orthologous sequence - P.aerophilum:139 P.jiroveci:139

Q8ZZK1              	100.00%		L0P7B5              	100.00%
Bootstrap support for Q8ZZK1 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #74. Best score 139 bits
Score difference with first non-orthologous sequence - P.aerophilum:139 P.jiroveci:139

Q8ZTY7              	100.00%		L0PFJ0              	100.00%
Bootstrap support for Q8ZTY7 as seed ortholog is 100%.
Bootstrap support for L0PFJ0 as seed ortholog is 100%.

Group of orthologs #75. Best score 135 bits
Score difference with first non-orthologous sequence - P.aerophilum:135 P.jiroveci:135

Q8ZT11              	100.00%		L0PBS5              	100.00%
Bootstrap support for Q8ZT11 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #76. Best score 134 bits
Score difference with first non-orthologous sequence - P.aerophilum:134 P.jiroveci:134

Q8ZSU7              	100.00%		L0PAM2              	100.00%
Bootstrap support for Q8ZSU7 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #77. Best score 130 bits
Score difference with first non-orthologous sequence - P.aerophilum:130 P.jiroveci:130

Q8ZY28              	100.00%		L0PFT7              	100.00%
Bootstrap support for Q8ZY28 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #78. Best score 129 bits
Score difference with first non-orthologous sequence - P.aerophilum:129 P.jiroveci:129

Q8ZVG4              	100.00%		L0P7L7              	100.00%
Bootstrap support for Q8ZVG4 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #79. Best score 128 bits
Score difference with first non-orthologous sequence - P.aerophilum:128 P.jiroveci:128

Q8ZWL4              	100.00%		L0PAE8              	100.00%
Bootstrap support for Q8ZWL4 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #80. Best score 128 bits
Score difference with first non-orthologous sequence - P.aerophilum:128 P.jiroveci:128

Q8ZYW7              	100.00%		L0P9Y7              	100.00%
Bootstrap support for Q8ZYW7 as seed ortholog is 100%.
Bootstrap support for L0P9Y7 as seed ortholog is 100%.

Group of orthologs #81. Best score 127 bits
Score difference with first non-orthologous sequence - P.aerophilum:127 P.jiroveci:127

Q8ZVL9              	100.00%		L0P7V4              	100.00%
Bootstrap support for Q8ZVL9 as seed ortholog is 100%.
Bootstrap support for L0P7V4 as seed ortholog is 100%.

Group of orthologs #82. Best score 126 bits
Score difference with first non-orthologous sequence - P.aerophilum:126 P.jiroveci:126

Q8ZZJ7              	100.00%		L0PF80              	100.00%
Bootstrap support for Q8ZZJ7 as seed ortholog is 100%.
Bootstrap support for L0PF80 as seed ortholog is 100%.

Group of orthologs #83. Best score 125 bits
Score difference with first non-orthologous sequence - P.aerophilum:125 P.jiroveci:125

Q8ZSV4              	100.00%		L0PAG0              	100.00%
Bootstrap support for Q8ZSV4 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #84. Best score 125 bits
Score difference with first non-orthologous sequence - P.aerophilum:125 P.jiroveci:125

Q8ZVV7              	100.00%		L0PA42              	100.00%
Bootstrap support for Q8ZVV7 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #85. Best score 125 bits
Score difference with first non-orthologous sequence - P.aerophilum:125 P.jiroveci:125

Q8ZVU8              	100.00%		L0PB50              	100.00%
Bootstrap support for Q8ZVU8 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #86. Best score 125 bits
Score difference with first non-orthologous sequence - P.aerophilum:69 P.jiroveci:61

Q8ZWS3              	100.00%		L0PFC0              	100.00%
Bootstrap support for Q8ZWS3 as seed ortholog is 96%.
Bootstrap support for L0PFC0 as seed ortholog is 94%.

Group of orthologs #87. Best score 125 bits
Score difference with first non-orthologous sequence - P.aerophilum:125 P.jiroveci:125

Q8ZY26              	100.00%		L0PFY1              	100.00%
Bootstrap support for Q8ZY26 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #88. Best score 124 bits
Score difference with first non-orthologous sequence - P.aerophilum:124 P.jiroveci:124

Q8ZZJ2              	100.00%		L0PDU5              	100.00%
Bootstrap support for Q8ZZJ2 as seed ortholog is 100%.
Bootstrap support for L0PDU5 as seed ortholog is 100%.

Group of orthologs #89. Best score 123 bits
Score difference with first non-orthologous sequence - P.aerophilum:123 P.jiroveci:123

Q8ZTJ4              	100.00%		L0P8G8              	100.00%
Bootstrap support for Q8ZTJ4 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #90. Best score 123 bits
Score difference with first non-orthologous sequence - P.aerophilum:123 P.jiroveci:123

Q8ZST4              	100.00%		L0PF71              	100.00%
Bootstrap support for Q8ZST4 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #91. Best score 121 bits
Score difference with first non-orthologous sequence - P.aerophilum:121 P.jiroveci:121

Q8ZTA8              	100.00%		L0PCW8              	100.00%
Bootstrap support for Q8ZTA8 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #92. Best score 121 bits
Score difference with first non-orthologous sequence - P.aerophilum:50 P.jiroveci:121

Q8ZWY9              	100.00%		L0PD68              	100.00%
Bootstrap support for Q8ZWY9 as seed ortholog is 91%.
Bootstrap support for L0PD68 as seed ortholog is 100%.

Group of orthologs #93. Best score 120 bits
Score difference with first non-orthologous sequence - P.aerophilum:120 P.jiroveci:69

Q8ZSW5              	100.00%		L0P8N0              	100.00%
Bootstrap support for Q8ZSW5 as seed ortholog is 100%.
Bootstrap support for L0P8N0 as seed ortholog is 93%.

Group of orthologs #94. Best score 118 bits
Score difference with first non-orthologous sequence - P.aerophilum:118 P.jiroveci:118

Q8ZVW0              	100.00%		L0PB66              	100.00%
Bootstrap support for Q8ZVW0 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #95. Best score 116 bits
Score difference with first non-orthologous sequence - P.aerophilum:116 P.jiroveci:116

O93724              	100.00%		L0PD77              	100.00%
Bootstrap support for O93724 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 100%.

Group of orthologs #96. Best score 113 bits
Score difference with first non-orthologous sequence - P.aerophilum:113 P.jiroveci:113

Q8ZTV2              	100.00%		L0PG76              	100.00%
                    	       		L0PE70              	59.20%
Bootstrap support for Q8ZTV2 as seed ortholog is 100%.
Bootstrap support for L0PG76 as seed ortholog is 100%.

Group of orthologs #97. Best score 113 bits
Score difference with first non-orthologous sequence - P.aerophilum:113 P.jiroveci:11

Q8ZTB6              	100.00%		L0PBQ9              	100.00%
Bootstrap support for Q8ZTB6 as seed ortholog is 100%.
Bootstrap support for L0PBQ9 as seed ortholog is 64%.
Alternative seed ortholog is L0PB10 (11 bits away from this cluster)

Group of orthologs #98. Best score 113 bits
Score difference with first non-orthologous sequence - P.aerophilum:113 P.jiroveci:113

Q8ZU14              	100.00%		L0PD55              	100.00%
Bootstrap support for Q8ZU14 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #99. Best score 113 bits
Score difference with first non-orthologous sequence - P.aerophilum:113 P.jiroveci:113

Q8ZWT5              	100.00%		L0PBI2              	100.00%
Bootstrap support for Q8ZWT5 as seed ortholog is 100%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #100. Best score 113 bits
Score difference with first non-orthologous sequence - P.aerophilum:45 P.jiroveci:113

Q8ZYP5              	100.00%		L0PBN2              	100.00%
Bootstrap support for Q8ZYP5 as seed ortholog is 90%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #101. Best score 109 bits
Score difference with first non-orthologous sequence - P.aerophilum:109 P.jiroveci:109

Q8ZWD8              	100.00%		L0P7H2              	100.00%
Bootstrap support for Q8ZWD8 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #102. Best score 107 bits
Score difference with first non-orthologous sequence - P.aerophilum:107 P.jiroveci:107

Q8ZTD3              	100.00%		L0PCG4              	100.00%
Bootstrap support for Q8ZTD3 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #103. Best score 107 bits
Score difference with first non-orthologous sequence - P.aerophilum:107 P.jiroveci:107

Q8ZTR2              	100.00%		L0PEG2              	100.00%
Bootstrap support for Q8ZTR2 as seed ortholog is 100%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #104. Best score 107 bits
Score difference with first non-orthologous sequence - P.aerophilum:107 P.jiroveci:107

Q8ZU54              	100.00%		L0PFS1              	100.00%
Bootstrap support for Q8ZU54 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #105. Best score 106 bits
Score difference with first non-orthologous sequence - P.aerophilum:106 P.jiroveci:106

Q8ZWW5              	100.00%		L0P723              	100.00%
Bootstrap support for Q8ZWW5 as seed ortholog is 100%.
Bootstrap support for L0P723 as seed ortholog is 100%.

Group of orthologs #106. Best score 105 bits
Score difference with first non-orthologous sequence - P.aerophilum:105 P.jiroveci:27

Q8ZYK3              	100.00%		L0PIN5              	100.00%
                    	       		L0PE52              	92.41%
Bootstrap support for Q8ZYK3 as seed ortholog is 100%.
Bootstrap support for L0PIN5 as seed ortholog is 74%.
Alternative seed ortholog is L0PE19 (27 bits away from this cluster)

Group of orthologs #107. Best score 105 bits
Score difference with first non-orthologous sequence - P.aerophilum:105 P.jiroveci:105

Q8ZTR0              	100.00%		L0PCA8              	100.00%
Bootstrap support for Q8ZTR0 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #108. Best score 104 bits
Score difference with first non-orthologous sequence - P.aerophilum:104 P.jiroveci:104

Q8ZW26              	100.00%		L0PBH4              	100.00%
                    	       		L0PCC5              	47.68%
                    	       		L0P7D9              	30.12%
                    	       		L0PFW2              	28.23%
                    	       		L0PFS3              	26.85%
                    	       		L0P9U9              	25.13%
                    	       		L0PF08              	12.91%
                    	       		L0PEA7              	12.39%
Bootstrap support for Q8ZW26 as seed ortholog is 100%.
Bootstrap support for L0PBH4 as seed ortholog is 100%.

Group of orthologs #109. Best score 104 bits
Score difference with first non-orthologous sequence - P.aerophilum:104 P.jiroveci:104

Q8ZYD9              	100.00%		L0PB12              	100.00%
Q8ZTD5              	8.11%		
Bootstrap support for Q8ZYD9 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #110. Best score 104 bits
Score difference with first non-orthologous sequence - P.aerophilum:104 P.jiroveci:54

Q8ZYI4              	100.00%		L0PCS3              	100.00%
Bootstrap support for Q8ZYI4 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 94%.

Group of orthologs #111. Best score 104 bits
Score difference with first non-orthologous sequence - P.aerophilum:104 P.jiroveci:104

Q8ZYJ0              	100.00%		L0PDF2              	100.00%
Bootstrap support for Q8ZYJ0 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #112. Best score 104 bits
Score difference with first non-orthologous sequence - P.aerophilum:104 P.jiroveci:104

Q8ZYQ3              	100.00%		L0PEQ4              	100.00%
Bootstrap support for Q8ZYQ3 as seed ortholog is 100%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #113. Best score 101 bits
Score difference with first non-orthologous sequence - P.aerophilum:101 P.jiroveci:101

Q8ZTV0              	100.00%		L0PE58              	100.00%
Bootstrap support for Q8ZTV0 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #114. Best score 99 bits
Score difference with first non-orthologous sequence - P.aerophilum:99 P.jiroveci:99

Q8ZTU1              	100.00%		L0PEV9              	100.00%
Bootstrap support for Q8ZTU1 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #115. Best score 99 bits
Score difference with first non-orthologous sequence - P.aerophilum:99 P.jiroveci:15

Q8ZYF2              	100.00%		L0PCJ2              	100.00%
Bootstrap support for Q8ZYF2 as seed ortholog is 100%.
Bootstrap support for L0PCJ2 as seed ortholog is 71%.
Alternative seed ortholog is L0P839 (15 bits away from this cluster)

Group of orthologs #116. Best score 99 bits
Score difference with first non-orthologous sequence - P.aerophilum:99 P.jiroveci:99

Q8ZXW7              	100.00%		L0PDZ2              	100.00%
Bootstrap support for Q8ZXW7 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #117. Best score 98 bits
Score difference with first non-orthologous sequence - P.aerophilum:36 P.jiroveci:44

Q8ZXG5              	100.00%		L0PBI4              	100.00%
Q8ZTD1              	43.54%		L0P9A8              	32.69%
Q8ZTD0              	28.23%		L0PHB9              	32.69%
Q8ZXG4              	24.35%		L0PCR9              	5.66%
Bootstrap support for Q8ZXG5 as seed ortholog is 87%.
Bootstrap support for L0PBI4 as seed ortholog is 91%.

Group of orthologs #118. Best score 97 bits
Score difference with first non-orthologous sequence - P.aerophilum:97 P.jiroveci:97

Q8ZWP2              	100.00%		L0PDR3              	100.00%
Q8ZSU1              	14.29%		
Bootstrap support for Q8ZWP2 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #119. Best score 97 bits
Score difference with first non-orthologous sequence - P.aerophilum:97 P.jiroveci:97

Q8ZUM0              	100.00%		L0PCY2              	100.00%
Bootstrap support for Q8ZUM0 as seed ortholog is 100%.
Bootstrap support for L0PCY2 as seed ortholog is 100%.

Group of orthologs #120. Best score 95 bits
Score difference with first non-orthologous sequence - P.aerophilum:95 P.jiroveci:95

Q8ZU23              	100.00%		L0P826              	100.00%
                    	       		L0PCK5              	22.48%
                    	       		L0PGY9              	16.29%
                    	       		L0PA98              	11.24%
Bootstrap support for Q8ZU23 as seed ortholog is 100%.
Bootstrap support for L0P826 as seed ortholog is 100%.

Group of orthologs #121. Best score 94 bits
Score difference with first non-orthologous sequence - P.aerophilum:43 P.jiroveci:94

Q8ZYT7              	100.00%		L0PAH2              	100.00%
Q8ZW77              	12.90%		
Bootstrap support for Q8ZYT7 as seed ortholog is 84%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #122. Best score 94 bits
Score difference with first non-orthologous sequence - P.aerophilum:94 P.jiroveci:16

Q8ZVM9              	100.00%		L0P9T6              	100.00%
Bootstrap support for Q8ZVM9 as seed ortholog is 100%.
Bootstrap support for L0P9T6 as seed ortholog is 72%.
Alternative seed ortholog is L0P6X4 (16 bits away from this cluster)

Group of orthologs #123. Best score 94 bits
Score difference with first non-orthologous sequence - P.aerophilum:94 P.jiroveci:94

Q8ZTG3              	100.00%		L0PHP6              	100.00%
Bootstrap support for Q8ZTG3 as seed ortholog is 100%.
Bootstrap support for L0PHP6 as seed ortholog is 100%.

Group of orthologs #124. Best score 94 bits
Score difference with first non-orthologous sequence - P.aerophilum:94 P.jiroveci:94

Q8ZVM7              	100.00%		L0PF44              	100.00%
Bootstrap support for Q8ZVM7 as seed ortholog is 100%.
Bootstrap support for L0PF44 as seed ortholog is 100%.

Group of orthologs #125. Best score 93 bits
Score difference with first non-orthologous sequence - P.aerophilum:93 P.jiroveci:37

Q8ZU41              	100.00%		L0PFK9              	100.00%
Q8ZT00              	28.91%		
Bootstrap support for Q8ZU41 as seed ortholog is 100%.
Bootstrap support for L0PFK9 as seed ortholog is 83%.

Group of orthologs #126. Best score 92 bits
Score difference with first non-orthologous sequence - P.aerophilum:92 P.jiroveci:92

Q8ZTG8              	100.00%		L0P9G9              	100.00%
Bootstrap support for Q8ZTG8 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #127. Best score 91 bits
Score difference with first non-orthologous sequence - P.aerophilum:91 P.jiroveci:11

Q8ZST5              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	90.20%
Bootstrap support for Q8ZST5 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 66%.
Alternative seed ortholog is L0P839 (11 bits away from this cluster)

Group of orthologs #128. Best score 89 bits
Score difference with first non-orthologous sequence - P.aerophilum:89 P.jiroveci:89

Q8ZSU5              	100.00%		L0P921              	100.00%
Bootstrap support for Q8ZSU5 as seed ortholog is 100%.
Bootstrap support for L0P921 as seed ortholog is 100%.

Group of orthologs #129. Best score 89 bits
Score difference with first non-orthologous sequence - P.aerophilum:89 P.jiroveci:89

Q8ZXY8              	100.00%		L0PFR9              	100.00%
Bootstrap support for Q8ZXY8 as seed ortholog is 100%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #130. Best score 87 bits
Score difference with first non-orthologous sequence - P.aerophilum:87 P.jiroveci:87

Q8ZTX8              	100.00%		L0P8H6              	100.00%
Bootstrap support for Q8ZTX8 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #131. Best score 86 bits
Score difference with first non-orthologous sequence - P.aerophilum:86 P.jiroveci:86

Q8ZVQ9              	100.00%		L0PBY9              	100.00%
Bootstrap support for Q8ZVQ9 as seed ortholog is 100%.
Bootstrap support for L0PBY9 as seed ortholog is 100%.

Group of orthologs #132. Best score 85 bits
Score difference with first non-orthologous sequence - P.aerophilum:85 P.jiroveci:85

Q8ZU34              	100.00%		L0P6Q8              	100.00%
                    	       		L0PD82              	62.56%
Bootstrap support for Q8ZU34 as seed ortholog is 100%.
Bootstrap support for L0P6Q8 as seed ortholog is 100%.

Group of orthologs #133. Best score 84 bits
Score difference with first non-orthologous sequence - P.aerophilum:84 P.jiroveci:84

Q8ZT21              	100.00%		L0PFL8              	100.00%
Bootstrap support for Q8ZT21 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #134. Best score 82 bits
Score difference with first non-orthologous sequence - P.aerophilum:82 P.jiroveci:82

Q8ZYM4              	100.00%		L0P7A1              	100.00%
Bootstrap support for Q8ZYM4 as seed ortholog is 100%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #135. Best score 81 bits
Score difference with first non-orthologous sequence - P.aerophilum:24 P.jiroveci:12

Q8ZVW5              	100.00%		L0P903              	100.00%
Q8ZYG0              	7.04%		
Bootstrap support for Q8ZVW5 as seed ortholog is 72%.
Alternative seed ortholog is Q8ZWW4 (24 bits away from this cluster)
Bootstrap support for L0P903 as seed ortholog is 65%.
Alternative seed ortholog is L0P8G6 (12 bits away from this cluster)

Group of orthologs #136. Best score 81 bits
Score difference with first non-orthologous sequence - P.aerophilum:81 P.jiroveci:81

Q8ZTJ3              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	68.57%
Bootstrap support for Q8ZTJ3 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #137. Best score 80 bits
Score difference with first non-orthologous sequence - P.aerophilum:80 P.jiroveci:35

Q8ZTT3              	100.00%		L0PHG7              	100.00%
Bootstrap support for Q8ZTT3 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 84%.

Group of orthologs #138. Best score 79 bits
Score difference with first non-orthologous sequence - P.aerophilum:79 P.jiroveci:8

Q8ZVN0              	100.00%		L0PB17              	100.00%
Bootstrap support for Q8ZVN0 as seed ortholog is 100%.
Bootstrap support for L0PB17 as seed ortholog is 54%.
Alternative seed ortholog is L0PEH9 (8 bits away from this cluster)

Group of orthologs #139. Best score 78 bits
Score difference with first non-orthologous sequence - P.aerophilum:78 P.jiroveci:78

Q8ZTE5              	100.00%		L0PAG1              	100.00%
Bootstrap support for Q8ZTE5 as seed ortholog is 100%.
Bootstrap support for L0PAG1 as seed ortholog is 100%.

Group of orthologs #140. Best score 77 bits
Score difference with first non-orthologous sequence - P.aerophilum:77 P.jiroveci:25

Q8ZYE2              	100.00%		L0P9N5              	100.00%
Bootstrap support for Q8ZYE2 as seed ortholog is 100%.
Bootstrap support for L0P9N5 as seed ortholog is 86%.

Group of orthologs #141. Best score 77 bits
Score difference with first non-orthologous sequence - P.aerophilum:77 P.jiroveci:77

Q8ZVE1              	100.00%		L0PFA3              	100.00%
Bootstrap support for Q8ZVE1 as seed ortholog is 100%.
Bootstrap support for L0PFA3 as seed ortholog is 100%.

Group of orthologs #142. Best score 75 bits
Score difference with first non-orthologous sequence - P.aerophilum:75 P.jiroveci:75

Q8ZY35              	100.00%		L0PE02              	100.00%
Bootstrap support for Q8ZY35 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #143. Best score 74 bits
Score difference with first non-orthologous sequence - P.aerophilum:10 P.jiroveci:74

Q8ZVH0              	100.00%		L0PFW6              	100.00%
Q8ZUH3              	20.34%		
Q8ZW29              	18.16%		
Q8ZXW3              	16.71%		
Q8ZZC4              	16.22%		
Q8ZXE6              	15.50%		
Q8ZU93              	15.25%		
Q8ZZV5              	15.25%		
Q8ZXL2              	13.32%		
Q8ZZG9              	7.26%		
Q8ZX91              	7.02%		
Bootstrap support for Q8ZVH0 as seed ortholog is 75%.
Bootstrap support for L0PFW6 as seed ortholog is 100%.

Group of orthologs #144. Best score 74 bits
Score difference with first non-orthologous sequence - P.aerophilum:74 P.jiroveci:74

Q8ZT20              	100.00%		L0PCU0              	100.00%
Bootstrap support for Q8ZT20 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #145. Best score 74 bits
Score difference with first non-orthologous sequence - P.aerophilum:74 P.jiroveci:74

Q8ZWS0              	100.00%		L0PBA8              	100.00%
Bootstrap support for Q8ZWS0 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #146. Best score 74 bits
Score difference with first non-orthologous sequence - P.aerophilum:74 P.jiroveci:74

Q8ZTY5              	100.00%		L0PFI2              	100.00%
Bootstrap support for Q8ZTY5 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #147. Best score 73 bits
Score difference with first non-orthologous sequence - P.aerophilum:73 P.jiroveci:73

Q8ZYJ8              	100.00%		L0P834              	100.00%
Bootstrap support for Q8ZYJ8 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 100%.

Group of orthologs #148. Best score 72 bits
Score difference with first non-orthologous sequence - P.aerophilum:18 P.jiroveci:72

Q8ZUZ6              	100.00%		L0P6U6              	100.00%
                    	       		L0PDF8              	10.14%
Bootstrap support for Q8ZUZ6 as seed ortholog is 47%.
Alternative seed ortholog is Q8ZT66 (18 bits away from this cluster)
Bootstrap support for L0P6U6 as seed ortholog is 100%.

Group of orthologs #149. Best score 72 bits
Score difference with first non-orthologous sequence - P.aerophilum:72 P.jiroveci:72

Q8ZU80              	100.00%		L0P9N4              	100.00%
Bootstrap support for Q8ZU80 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #150. Best score 72 bits
Score difference with first non-orthologous sequence - P.aerophilum:72 P.jiroveci:72

Q8ZYQ6              	100.00%		L0PBI9              	100.00%
Bootstrap support for Q8ZYQ6 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #151. Best score 71 bits
Score difference with first non-orthologous sequence - P.aerophilum:71 P.jiroveci:71

Q8ZWH7              	100.00%		L0PGY0              	100.00%
Bootstrap support for Q8ZWH7 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #152. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZVV8              	100.00%		L0PC18              	100.00%
Bootstrap support for Q8ZVV8 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #153. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZYQ1              	100.00%		L0P9Y2              	100.00%
Bootstrap support for Q8ZYQ1 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #154. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZTD4              	100.00%		L0PG87              	100.00%
Bootstrap support for Q8ZTD4 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #155. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZVM8              	100.00%		L0PGE7              	100.00%
Bootstrap support for Q8ZVM8 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #156. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZYH6              	100.00%		L0PDP9              	100.00%
Bootstrap support for Q8ZYH6 as seed ortholog is 100%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #157. Best score 70 bits
Score difference with first non-orthologous sequence - P.aerophilum:70 P.jiroveci:70

Q8ZYQ0              	100.00%		L0PGZ5              	100.00%
Bootstrap support for Q8ZYQ0 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #158. Best score 68 bits
Score difference with first non-orthologous sequence - P.aerophilum:68 P.jiroveci:68

Q8ZWQ7              	100.00%		L0P9X7              	100.00%
Bootstrap support for Q8ZWQ7 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #159. Best score 68 bits
Score difference with first non-orthologous sequence - P.aerophilum:68 P.jiroveci:68

Q8ZWT7              	100.00%		L0PBJ0              	100.00%
Bootstrap support for Q8ZWT7 as seed ortholog is 100%.
Bootstrap support for L0PBJ0 as seed ortholog is 100%.

Group of orthologs #160. Best score 67 bits
Score difference with first non-orthologous sequence - P.aerophilum:67 P.jiroveci:67

Q8ZU18              	100.00%		L0PBV3              	100.00%
Bootstrap support for Q8ZU18 as seed ortholog is 100%.
Bootstrap support for L0PBV3 as seed ortholog is 100%.

Group of orthologs #161. Best score 67 bits
Score difference with first non-orthologous sequence - P.aerophilum:67 P.jiroveci:67

Q8ZZ46              	100.00%		L0PF49              	100.00%
Bootstrap support for Q8ZZ46 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #162. Best score 66 bits
Score difference with first non-orthologous sequence - P.aerophilum:66 P.jiroveci:66

Q8ZYE4              	100.00%		L0PAY3              	100.00%
                    	       		L0PCJ3              	43.91%
                    	       		L0PA26              	32.84%
                    	       		L0PF10              	32.84%
                    	       		L0P980              	27.49%
                    	       		L0PD71              	26.20%
                    	       		L0P9Z0              	19.56%
                    	       		L0PBU5              	10.52%
                    	       		L0PE30              	10.33%
                    	       		L0P6W2              	9.41%
                    	       		L0PAL3              	5.90%
                    	       		L0P9H7              	5.17%
Bootstrap support for Q8ZYE4 as seed ortholog is 100%.
Bootstrap support for L0PAY3 as seed ortholog is 100%.

Group of orthologs #163. Best score 66 bits
Score difference with first non-orthologous sequence - P.aerophilum:66 P.jiroveci:66

Q8ZT50              	100.00%		L0PB81              	100.00%
Bootstrap support for Q8ZT50 as seed ortholog is 100%.
Bootstrap support for L0PB81 as seed ortholog is 100%.

Group of orthologs #164. Best score 66 bits
Score difference with first non-orthologous sequence - P.aerophilum:66 P.jiroveci:66

Q8ZTE2              	100.00%		L0PE74              	100.00%
Bootstrap support for Q8ZTE2 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #165. Best score 66 bits
Score difference with first non-orthologous sequence - P.aerophilum:66 P.jiroveci:66

Q8ZXR6              	100.00%		L0PEW5              	100.00%
Bootstrap support for Q8ZXR6 as seed ortholog is 100%.
Bootstrap support for L0PEW5 as seed ortholog is 100%.

Group of orthologs #166. Best score 65 bits
Score difference with first non-orthologous sequence - P.aerophilum:65 P.jiroveci:65

Q8ZST3              	100.00%		L0PD44              	100.00%
Q8ZXD4              	100.00%		
Bootstrap support for Q8ZST3 as seed ortholog is 100%.
Bootstrap support for Q8ZXD4 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #167. Best score 65 bits
Score difference with first non-orthologous sequence - P.aerophilum:65 P.jiroveci:65

Q8ZVX6              	100.00%		L0P746              	100.00%
Bootstrap support for Q8ZVX6 as seed ortholog is 100%.
Bootstrap support for L0P746 as seed ortholog is 100%.

Group of orthologs #168. Best score 65 bits
Score difference with first non-orthologous sequence - P.aerophilum:65 P.jiroveci:65

Q8ZW45              	100.00%		L0PBT0              	100.00%
Bootstrap support for Q8ZW45 as seed ortholog is 100%.
Bootstrap support for L0PBT0 as seed ortholog is 100%.

Group of orthologs #169. Best score 64 bits
Score difference with first non-orthologous sequence - P.aerophilum:64 P.jiroveci:64

Q7LX30              	100.00%		L0P8J0              	100.00%
Bootstrap support for Q7LX30 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #170. Best score 62 bits
Score difference with first non-orthologous sequence - P.aerophilum:62 P.jiroveci:62

P56635              	100.00%		L0PD65              	100.00%
Bootstrap support for P56635 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #171. Best score 62 bits
Score difference with first non-orthologous sequence - P.aerophilum:62 P.jiroveci:62

Q8ZYP9              	100.00%		L0PBK0              	100.00%
Bootstrap support for Q8ZYP9 as seed ortholog is 100%.
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #172. Best score 61 bits
Score difference with first non-orthologous sequence - P.aerophilum:61 P.jiroveci:61

Q8ZY96              	100.00%		L0PEE8              	100.00%
Bootstrap support for Q8ZY96 as seed ortholog is 100%.
Bootstrap support for L0PEE8 as seed ortholog is 100%.

Group of orthologs #173. Best score 60 bits
Score difference with first non-orthologous sequence - P.aerophilum:60 P.jiroveci:60

Q8ZZH5              	100.00%		L0PD03              	100.00%
                    	       		L0P861              	39.53%
Bootstrap support for Q8ZZH5 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 100%.

Group of orthologs #174. Best score 59 bits
Score difference with first non-orthologous sequence - P.aerophilum:59 P.jiroveci:59

Q8ZYT2              	100.00%		L0PF23              	100.00%
Q8ZW13              	14.29%		
Bootstrap support for Q8ZYT2 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #175. Best score 59 bits
Score difference with first non-orthologous sequence - P.aerophilum:59 P.jiroveci:59

Q8ZTX9              	100.00%		L0P9L0              	100.00%
Bootstrap support for Q8ZTX9 as seed ortholog is 100%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #176. Best score 58 bits
Score difference with first non-orthologous sequence - P.aerophilum:58 P.jiroveci:58

Q8ZXN3              	100.00%		L0P7X9              	100.00%
                    	       		L0PBE2              	100.00%
Bootstrap support for Q8ZXN3 as seed ortholog is 100%.
Bootstrap support for L0P7X9 as seed ortholog is 100%.
Bootstrap support for L0PBE2 as seed ortholog is 100%.

Group of orthologs #177. Best score 58 bits
Score difference with first non-orthologous sequence - P.aerophilum:58 P.jiroveci:58

Q8ZV18              	100.00%		L0P9H8              	100.00%
Bootstrap support for Q8ZV18 as seed ortholog is 100%.
Bootstrap support for L0P9H8 as seed ortholog is 100%.

Group of orthologs #178. Best score 58 bits
Score difference with first non-orthologous sequence - P.aerophilum:58 P.jiroveci:58

Q8ZTG4              	100.00%		L0PG08              	100.00%
Bootstrap support for Q8ZTG4 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #179. Best score 58 bits
Score difference with first non-orthologous sequence - P.aerophilum:58 P.jiroveci:58

Q8ZW27              	100.00%		L0PFQ3              	100.00%
Bootstrap support for Q8ZW27 as seed ortholog is 100%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #180. Best score 57 bits
Score difference with first non-orthologous sequence - P.aerophilum:57 P.jiroveci:57

Q8ZZ97              	100.00%		L0P863              	100.00%
                    	       		L0PBY2              	7.22%
Bootstrap support for Q8ZZ97 as seed ortholog is 100%.
Bootstrap support for L0P863 as seed ortholog is 100%.

Group of orthologs #181. Best score 57 bits
Score difference with first non-orthologous sequence - P.aerophilum:57 P.jiroveci:57

Q8ZWC4              	100.00%		L0PBZ4              	100.00%
Bootstrap support for Q8ZWC4 as seed ortholog is 100%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #182. Best score 57 bits
Score difference with first non-orthologous sequence - P.aerophilum:57 P.jiroveci:57

Q8ZVB2              	100.00%		L0PE61              	100.00%
Bootstrap support for Q8ZVB2 as seed ortholog is 100%.
Bootstrap support for L0PE61 as seed ortholog is 100%.

Group of orthologs #183. Best score 56 bits
Score difference with first non-orthologous sequence - P.aerophilum:56 P.jiroveci:56

Q8ZXR9              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	83.42%
Bootstrap support for Q8ZXR9 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #184. Best score 56 bits
Score difference with first non-orthologous sequence - P.aerophilum:56 P.jiroveci:56

Q8ZV65              	100.00%		L0PEG0              	100.00%
Bootstrap support for Q8ZV65 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #185. Best score 56 bits
Score difference with first non-orthologous sequence - P.aerophilum:56 P.jiroveci:56

Q8ZZC7              	100.00%		L0PI19              	100.00%
Bootstrap support for Q8ZZC7 as seed ortholog is 100%.
Bootstrap support for L0PI19 as seed ortholog is 100%.

Group of orthologs #186. Best score 55 bits
Score difference with first non-orthologous sequence - P.aerophilum:55 P.jiroveci:55

Q8ZTA7              	100.00%		L0P8G4              	100.00%
Bootstrap support for Q8ZTA7 as seed ortholog is 100%.
Bootstrap support for L0P8G4 as seed ortholog is 100%.

Group of orthologs #187. Best score 55 bits
Score difference with first non-orthologous sequence - P.aerophilum:55 P.jiroveci:55

Q8ZZH3              	100.00%		L0PFY9              	100.00%
Bootstrap support for Q8ZZH3 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #188. Best score 54 bits
Score difference with first non-orthologous sequence - P.aerophilum:54 P.jiroveci:54

Q8ZXN8              	100.00%		L0PCG0              	100.00%
Bootstrap support for Q8ZXN8 as seed ortholog is 100%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #189. Best score 53 bits
Score difference with first non-orthologous sequence - P.aerophilum:53 P.jiroveci:53

Q8ZT45              	100.00%		L0PI13              	100.00%
Q8ZUY0              	100.00%		
Bootstrap support for Q8ZT45 as seed ortholog is 100%.
Bootstrap support for Q8ZUY0 as seed ortholog is 100%.
Bootstrap support for L0PI13 as seed ortholog is 100%.

Group of orthologs #190. Best score 52 bits
Score difference with first non-orthologous sequence - P.aerophilum:52 P.jiroveci:6

Q8ZYG5              	100.00%		L0PB27              	100.00%
Bootstrap support for Q8ZYG5 as seed ortholog is 100%.
Bootstrap support for L0PB27 as seed ortholog is 62%.
Alternative seed ortholog is L0P9A7 (6 bits away from this cluster)

Group of orthologs #191. Best score 51 bits
Score difference with first non-orthologous sequence - P.aerophilum:51 P.jiroveci:51

Q8ZSV9              	100.00%		L0P7Z9              	100.00%
Bootstrap support for Q8ZSV9 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #192. Best score 51 bits
Score difference with first non-orthologous sequence - P.aerophilum:51 P.jiroveci:51

Q8ZZK5              	100.00%		L0PFN8              	100.00%
Bootstrap support for Q8ZZK5 as seed ortholog is 100%.
Bootstrap support for L0PFN8 as seed ortholog is 100%.

Group of orthologs #193. Best score 50 bits
Score difference with first non-orthologous sequence - P.aerophilum:50 P.jiroveci:50

Q8ZUW4              	100.00%		L0P7T6              	100.00%
                    	       		L0PF25              	100.00%
Bootstrap support for Q8ZUW4 as seed ortholog is 100%.
Bootstrap support for L0P7T6 as seed ortholog is 100%.
Bootstrap support for L0PF25 as seed ortholog is 100%.

Group of orthologs #194. Best score 50 bits
Score difference with first non-orthologous sequence - P.aerophilum:50 P.jiroveci:50

Q8ZTN9              	100.00%		L0P9P0              	100.00%
Bootstrap support for Q8ZTN9 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #195. Best score 50 bits
Score difference with first non-orthologous sequence - P.aerophilum:50 P.jiroveci:50

Q8ZX28              	100.00%		L0PF73              	100.00%
Bootstrap support for Q8ZX28 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #196. Best score 49 bits
Score difference with first non-orthologous sequence - P.aerophilum:49 P.jiroveci:49

Q8ZU24              	100.00%		L0PAU3              	100.00%
                    	       		L0PBF0              	28.29%
Bootstrap support for Q8ZU24 as seed ortholog is 100%.
Bootstrap support for L0PAU3 as seed ortholog is 100%.

Group of orthologs #197. Best score 49 bits
Score difference with first non-orthologous sequence - P.aerophilum:49 P.jiroveci:49

Q8ZYP8              	100.00%		L0PCQ5              	100.00%
                    	       		L0PD19              	9.00%
Bootstrap support for Q8ZYP8 as seed ortholog is 100%.
Bootstrap support for L0PCQ5 as seed ortholog is 100%.

Group of orthologs #198. Best score 49 bits
Score difference with first non-orthologous sequence - P.aerophilum:49 P.jiroveci:49

Q8ZTT5              	100.00%		L0PBZ6              	100.00%
Bootstrap support for Q8ZTT5 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #199. Best score 48 bits
Score difference with first non-orthologous sequence - P.aerophilum:48 P.jiroveci:48

Q8ZWT4              	100.00%		L0P7E9              	100.00%
                    	       		L0PEX1              	7.25%
Bootstrap support for Q8ZWT4 as seed ortholog is 100%.
Bootstrap support for L0P7E9 as seed ortholog is 100%.

Group of orthologs #200. Best score 47 bits
Score difference with first non-orthologous sequence - P.aerophilum:47 P.jiroveci:47

Q8ZU76              	100.00%		L0PF35              	100.00%
Bootstrap support for Q8ZU76 as seed ortholog is 100%.
Bootstrap support for L0PF35 as seed ortholog is 100%.

Group of orthologs #201. Best score 47 bits
Score difference with first non-orthologous sequence - P.aerophilum:47 P.jiroveci:47

Q8ZY02              	100.00%		L0PHC9              	100.00%
Bootstrap support for Q8ZY02 as seed ortholog is 100%.
Bootstrap support for L0PHC9 as seed ortholog is 100%.

Group of orthologs #202. Best score 45 bits
Score difference with first non-orthologous sequence - P.aerophilum:45 P.jiroveci:45

Q8ZU53              	100.00%		L0PCH1              	100.00%
Bootstrap support for Q8ZU53 as seed ortholog is 100%.
Bootstrap support for L0PCH1 as seed ortholog is 100%.

Group of orthologs #203. Best score 43 bits
Score difference with first non-orthologous sequence - P.aerophilum:43 P.jiroveci:43

Q8ZXZ8              	100.00%		L0PFC9              	100.00%
Bootstrap support for Q8ZXZ8 as seed ortholog is 100%.
Bootstrap support for L0PFC9 as seed ortholog is 100%.

Group of orthologs #204. Best score 41 bits
Score difference with first non-orthologous sequence - P.aerophilum:41 P.jiroveci:41

Q8ZY03              	100.00%		L0PFG9              	100.00%
Bootstrap support for Q8ZY03 as seed ortholog is 100%.
Bootstrap support for L0PFG9 as seed ortholog is 100%.

Group of orthologs #205. Best score 40 bits
Score difference with first non-orthologous sequence - P.aerophilum:40 P.jiroveci:40

Q8ZX02              	100.00%		L0P838              	100.00%
Bootstrap support for Q8ZX02 as seed ortholog is 100%.
Bootstrap support for L0P838 as seed ortholog is 100%.