###################################
285 groups of orthologs
314 in-paralogs from M.jannaschii
415 in-paralogs from P.pallidum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 670 bits
Score difference with first non-orthologous sequence - M.jannaschii:670 P.pallidum:170

Q58556              	100.00%		D3BIX9              	100.00%
Bootstrap support for Q58556 as seed ortholog is 100%.
Bootstrap support for D3BIX9 as seed ortholog is 99%.

Group of orthologs #2. Best score 649 bits
Score difference with first non-orthologous sequence - M.jannaschii:649 P.pallidum:649

Q58445              	100.00%		D3BKC8              	100.00%
                    	       		D3BJK4              	7.70%
Bootstrap support for Q58445 as seed ortholog is 100%.
Bootstrap support for D3BKC8 as seed ortholog is 100%.

Group of orthologs #3. Best score 619 bits
Score difference with first non-orthologous sequence - M.jannaschii:619 P.pallidum:309

Q58623              	100.00%		D3AZS5              	100.00%
Bootstrap support for Q58623 as seed ortholog is 100%.
Bootstrap support for D3AZS5 as seed ortholog is 100%.

Group of orthologs #4. Best score 588 bits
Score difference with first non-orthologous sequence - M.jannaschii:588 P.pallidum:451

Q57670              	100.00%		D3B700              	100.00%
Bootstrap support for Q57670 as seed ortholog is 100%.
Bootstrap support for D3B700 as seed ortholog is 100%.

Group of orthologs #5. Best score 568 bits
Score difference with first non-orthologous sequence - M.jannaschii:568 P.pallidum:429

Q58129              	100.00%		D3AZB7              	100.00%
Bootstrap support for Q58129 as seed ortholog is 100%.
Bootstrap support for D3AZB7 as seed ortholog is 100%.

Group of orthologs #6. Best score 529 bits
Score difference with first non-orthologous sequence - M.jannaschii:529 P.pallidum:399

Q57669              	100.00%		D3B5K2              	100.00%
Bootstrap support for Q57669 as seed ortholog is 100%.
Bootstrap support for D3B5K2 as seed ortholog is 100%.

Group of orthologs #7. Best score 514 bits
Score difference with first non-orthologous sequence - M.jannaschii:514 P.pallidum:158

Q58357              	100.00%		D3BUX1              	100.00%
Bootstrap support for Q58357 as seed ortholog is 100%.
Bootstrap support for D3BUX1 as seed ortholog is 99%.

Group of orthologs #8. Best score 502 bits
Score difference with first non-orthologous sequence - M.jannaschii:502 P.pallidum:502

Q57681              	100.00%		D3B7L4              	100.00%
Bootstrap support for Q57681 as seed ortholog is 100%.
Bootstrap support for D3B7L4 as seed ortholog is 100%.

Group of orthologs #9. Best score 500 bits
Score difference with first non-orthologous sequence - M.jannaschii:500 P.pallidum:189

Q60181              	100.00%		D3B936              	100.00%
                    	       		D3BHD6              	8.37%
Bootstrap support for Q60181 as seed ortholog is 100%.
Bootstrap support for D3B936 as seed ortholog is 99%.

Group of orthologs #10. Best score 490 bits
Score difference with first non-orthologous sequence - M.jannaschii:490 P.pallidum:490

Q58574              	100.00%		D3B5W3              	100.00%
Bootstrap support for Q58574 as seed ortholog is 100%.
Bootstrap support for D3B5W3 as seed ortholog is 100%.

Group of orthologs #11. Best score 487 bits
Score difference with first non-orthologous sequence - M.jannaschii:487 P.pallidum:487

Q58095              	100.00%		D3BEZ7              	100.00%
Bootstrap support for Q58095 as seed ortholog is 100%.
Bootstrap support for D3BEZ7 as seed ortholog is 100%.

Group of orthologs #12. Best score 466 bits
Score difference with first non-orthologous sequence - M.jannaschii:466 P.pallidum:110

Q58448              	100.00%		D3BU68              	100.00%
                    	       		D3BHD0              	38.34%
                    	       		D3BFQ2              	7.38%
Bootstrap support for Q58448 as seed ortholog is 100%.
Bootstrap support for D3BU68 as seed ortholog is 99%.

Group of orthologs #13. Best score 466 bits
Score difference with first non-orthologous sequence - M.jannaschii:466 P.pallidum:466

Q58626              	100.00%		D3BRG0              	100.00%
Bootstrap support for Q58626 as seed ortholog is 100%.
Bootstrap support for D3BRG0 as seed ortholog is 100%.

Group of orthologs #14. Best score 460 bits
Score difference with first non-orthologous sequence - M.jannaschii:460 P.pallidum:460

Q60173              	100.00%		D3BP87              	100.00%
                    	       		D3BH75              	49.13%
Bootstrap support for Q60173 as seed ortholog is 100%.
Bootstrap support for D3BP87 as seed ortholog is 100%.

Group of orthologs #15. Best score 457 bits
Score difference with first non-orthologous sequence - M.jannaschii:457 P.pallidum:457

Q58536              	100.00%		D3BSF9              	100.00%
Bootstrap support for Q58536 as seed ortholog is 100%.
Bootstrap support for D3BSF9 as seed ortholog is 100%.

Group of orthologs #16. Best score 438 bits
Score difference with first non-orthologous sequence - M.jannaschii:438 P.pallidum:118

Q57770              	100.00%		D3BP51              	100.00%
Bootstrap support for Q57770 as seed ortholog is 100%.
Bootstrap support for D3BP51 as seed ortholog is 99%.

Group of orthologs #17. Best score 399 bits
Score difference with first non-orthologous sequence - M.jannaschii:399 P.pallidum:25

Q58405              	100.00%		D3BFC6              	100.00%
Bootstrap support for Q58405 as seed ortholog is 100%.
Bootstrap support for D3BFC6 as seed ortholog is 72%.
Alternative seed ortholog is D3B3N8 (25 bits away from this cluster)

Group of orthologs #18. Best score 388 bits
Score difference with first non-orthologous sequence - M.jannaschii:388 P.pallidum:263

Q58657              	100.00%		D3B255              	100.00%
                    	       		D3B915              	21.21%
Bootstrap support for Q58657 as seed ortholog is 100%.
Bootstrap support for D3B255 as seed ortholog is 100%.

Group of orthologs #19. Best score 379 bits
Score difference with first non-orthologous sequence - M.jannaschii:379 P.pallidum:244

Q58050              	100.00%		D3B015              	100.00%
Bootstrap support for Q58050 as seed ortholog is 100%.
Bootstrap support for D3B015 as seed ortholog is 99%.

Group of orthologs #20. Best score 370 bits
Score difference with first non-orthologous sequence - M.jannaschii:218 P.pallidum:11

Q58576              	100.00%		D3B6W8              	100.00%
Bootstrap support for Q58576 as seed ortholog is 100%.
Bootstrap support for D3B6W8 as seed ortholog is 60%.
Alternative seed ortholog is D3BPU8 (11 bits away from this cluster)

Group of orthologs #21. Best score 346 bits
Score difference with first non-orthologous sequence - M.jannaschii:346 P.pallidum:346

Q58722              	100.00%		D3BE82              	100.00%
                    	       		D3BMS6              	22.83%
Bootstrap support for Q58722 as seed ortholog is 100%.
Bootstrap support for D3BE82 as seed ortholog is 100%.

Group of orthologs #22. Best score 344 bits
Score difference with first non-orthologous sequence - M.jannaschii:344 P.pallidum:171

Q58659              	100.00%		D3BAM8              	100.00%
Bootstrap support for Q58659 as seed ortholog is 100%.
Bootstrap support for D3BAM8 as seed ortholog is 99%.

Group of orthologs #23. Best score 342 bits
Score difference with first non-orthologous sequence - M.jannaschii:217 P.pallidum:2

Q59037              	100.00%		D3BDE5              	100.00%
Bootstrap support for Q59037 as seed ortholog is 98%.
Bootstrap support for D3BDE5 as seed ortholog is 50%.
Alternative seed ortholog is D3BQ59 (2 bits away from this cluster)

Group of orthologs #24. Best score 342 bits
Score difference with first non-orthologous sequence - M.jannaschii:342 P.pallidum:342

Q58090              	100.00%		D3BPW8              	100.00%
Bootstrap support for Q58090 as seed ortholog is 100%.
Bootstrap support for D3BPW8 as seed ortholog is 100%.

Group of orthologs #25. Best score 336 bits
Score difference with first non-orthologous sequence - M.jannaschii:336 P.pallidum:336

Q57657              	100.00%		D3BPT5              	100.00%
Bootstrap support for Q57657 as seed ortholog is 100%.
Bootstrap support for D3BPT5 as seed ortholog is 100%.

Group of orthologs #26. Best score 324 bits
Score difference with first non-orthologous sequence - M.jannaschii:324 P.pallidum:54

Q58413              	100.00%		D3BPX3              	100.00%
                    	       		D3BC16              	24.58%
Bootstrap support for Q58413 as seed ortholog is 100%.
Bootstrap support for D3BPX3 as seed ortholog is 80%.

Group of orthologs #27. Best score 323 bits
Score difference with first non-orthologous sequence - M.jannaschii:323 P.pallidum:323

Q58783              	100.00%		D3BNY4              	100.00%
Bootstrap support for Q58783 as seed ortholog is 100%.
Bootstrap support for D3BNY4 as seed ortholog is 100%.

Group of orthologs #28. Best score 320 bits
Score difference with first non-orthologous sequence - M.jannaschii:320 P.pallidum:320

Q58530              	100.00%		D3AXJ0              	100.00%
Bootstrap support for Q58530 as seed ortholog is 100%.
Bootstrap support for D3AXJ0 as seed ortholog is 100%.

Group of orthologs #29. Best score 318 bits
Score difference with first non-orthologous sequence - M.jannaschii:318 P.pallidum:318

Q57565              	100.00%		D3BBV3              	100.00%
Bootstrap support for Q57565 as seed ortholog is 100%.
Bootstrap support for D3BBV3 as seed ortholog is 100%.

Group of orthologs #30. Best score 312 bits
Score difference with first non-orthologous sequence - M.jannaschii:312 P.pallidum:103

Q57568              	100.00%		D3BJ28              	100.00%
Bootstrap support for Q57568 as seed ortholog is 100%.
Bootstrap support for D3BJ28 as seed ortholog is 96%.

Group of orthologs #31. Best score 310 bits
Score difference with first non-orthologous sequence - M.jannaschii:310 P.pallidum:268

Q58635              	100.00%		D3BRI9              	100.00%
Bootstrap support for Q58635 as seed ortholog is 100%.
Bootstrap support for D3BRI9 as seed ortholog is 100%.

Group of orthologs #32. Best score 309 bits
Score difference with first non-orthologous sequence - M.jannaschii:309 P.pallidum:309

Q58815              	100.00%		D3BT14              	100.00%
Bootstrap support for Q58815 as seed ortholog is 100%.
Bootstrap support for D3BT14 as seed ortholog is 100%.

Group of orthologs #33. Best score 307 bits
Score difference with first non-orthologous sequence - M.jannaschii:307 P.pallidum:307

Q58116              	100.00%		D3B588              	100.00%
                    	       		D3BKC2              	26.37%
Bootstrap support for Q58116 as seed ortholog is 100%.
Bootstrap support for D3B588 as seed ortholog is 100%.

Group of orthologs #34. Best score 302 bits
Score difference with first non-orthologous sequence - M.jannaschii:302 P.pallidum:302

Q59011              	100.00%		D3BQJ8              	100.00%
Bootstrap support for Q59011 as seed ortholog is 100%.
Bootstrap support for D3BQJ8 as seed ortholog is 100%.

Group of orthologs #35. Best score 300 bits
Score difference with first non-orthologous sequence - M.jannaschii:300 P.pallidum:300

Q57658              	100.00%		D3B6X7              	100.00%
Bootstrap support for Q57658 as seed ortholog is 100%.
Bootstrap support for D3B6X7 as seed ortholog is 100%.

Group of orthologs #36. Best score 294 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pallidum:47

Q58131              	100.00%		D3BGV8              	100.00%
Bootstrap support for Q58131 as seed ortholog is 99%.
Bootstrap support for D3BGV8 as seed ortholog is 88%.

Group of orthologs #37. Best score 292 bits
Score difference with first non-orthologous sequence - M.jannaschii:292 P.pallidum:292

Q58224              	100.00%		D3AXR9              	100.00%
Bootstrap support for Q58224 as seed ortholog is 100%.
Bootstrap support for D3AXR9 as seed ortholog is 100%.

Group of orthologs #38. Best score 283 bits
Score difference with first non-orthologous sequence - M.jannaschii:283 P.pallidum:283

Q60175              	100.00%		D3B1K5              	100.00%
Bootstrap support for Q60175 as seed ortholog is 100%.
Bootstrap support for D3B1K5 as seed ortholog is 100%.

Group of orthologs #39. Best score 274 bits
Score difference with first non-orthologous sequence - M.jannaschii:274 P.pallidum:15

Q58806              	100.00%		D3BER4              	100.00%
Bootstrap support for Q58806 as seed ortholog is 100%.
Bootstrap support for D3BER4 as seed ortholog is 63%.
Alternative seed ortholog is D3BRC2 (15 bits away from this cluster)

Group of orthologs #40. Best score 271 bits
Score difference with first non-orthologous sequence - M.jannaschii:271 P.pallidum:223

Q57612              	100.00%		D3AWX0              	100.00%
Bootstrap support for Q57612 as seed ortholog is 100%.
Bootstrap support for D3AWX0 as seed ortholog is 100%.

Group of orthologs #41. Best score 270 bits
Score difference with first non-orthologous sequence - M.jannaschii:270 P.pallidum:270

Q57816              	100.00%		D3BAS1              	100.00%
Q58039              	16.43%		
Bootstrap support for Q57816 as seed ortholog is 100%.
Bootstrap support for D3BAS1 as seed ortholog is 100%.

Group of orthologs #42. Best score 270 bits
Score difference with first non-orthologous sequence - M.jannaschii:270 P.pallidum:110

Q58560              	100.00%		D3BAC1              	100.00%
Bootstrap support for Q58560 as seed ortholog is 100%.
Bootstrap support for D3BAC1 as seed ortholog is 99%.

Group of orthologs #43. Best score 268 bits
Score difference with first non-orthologous sequence - M.jannaschii:144 P.pallidum:268

Q57624              	100.00%		D3B508              	100.00%
Bootstrap support for Q57624 as seed ortholog is 99%.
Bootstrap support for D3B508 as seed ortholog is 100%.

Group of orthologs #44. Best score 263 bits
Score difference with first non-orthologous sequence - M.jannaschii:263 P.pallidum:53

Q58950              	100.00%		D3BEH3              	100.00%
Bootstrap support for Q58950 as seed ortholog is 100%.
Bootstrap support for D3BEH3 as seed ortholog is 88%.

Group of orthologs #45. Best score 262 bits
Score difference with first non-orthologous sequence - M.jannaschii:262 P.pallidum:169

Q58728              	100.00%		D3AZ62              	100.00%
Bootstrap support for Q58728 as seed ortholog is 100%.
Bootstrap support for D3AZ62 as seed ortholog is 100%.

Group of orthologs #46. Best score 260 bits
Score difference with first non-orthologous sequence - M.jannaschii:260 P.pallidum:260

Q57645              	100.00%		D3AXF4              	100.00%
Bootstrap support for Q57645 as seed ortholog is 100%.
Bootstrap support for D3AXF4 as seed ortholog is 100%.

Group of orthologs #47. Best score 257 bits
Score difference with first non-orthologous sequence - M.jannaschii:257 P.pallidum:257

Q58508              	100.00%		D3BMN8              	100.00%
Bootstrap support for Q58508 as seed ortholog is 100%.
Bootstrap support for D3BMN8 as seed ortholog is 100%.

Group of orthologs #48. Best score 256 bits
Score difference with first non-orthologous sequence - M.jannaschii:120 P.pallidum:256

Q59007              	100.00%		D3BD73              	100.00%
Bootstrap support for Q59007 as seed ortholog is 99%.
Bootstrap support for D3BD73 as seed ortholog is 100%.

Group of orthologs #49. Best score 253 bits
Score difference with first non-orthologous sequence - M.jannaschii:253 P.pallidum:253

Q57991              	100.00%		D3BT16              	100.00%
Bootstrap support for Q57991 as seed ortholog is 100%.
Bootstrap support for D3BT16 as seed ortholog is 100%.

Group of orthologs #50. Best score 248 bits
Score difference with first non-orthologous sequence - M.jannaschii:174 P.pallidum:150

Q49593              	100.00%		D3BI15              	100.00%
Bootstrap support for Q49593 as seed ortholog is 100%.
Bootstrap support for D3BI15 as seed ortholog is 99%.

Group of orthologs #51. Best score 243 bits
Score difference with first non-orthologous sequence - M.jannaschii:243 P.pallidum:243

Q58374              	100.00%		D3BLR5              	100.00%
Bootstrap support for Q58374 as seed ortholog is 100%.
Bootstrap support for D3BLR5 as seed ortholog is 100%.

Group of orthologs #52. Best score 238 bits
Score difference with first non-orthologous sequence - M.jannaschii:238 P.pallidum:238

Q57896              	100.00%		D3BL61              	100.00%
Bootstrap support for Q57896 as seed ortholog is 100%.
Bootstrap support for D3BL61 as seed ortholog is 100%.

Group of orthologs #53. Best score 238 bits
Score difference with first non-orthologous sequence - M.jannaschii:175 P.pallidum:93

Q58936              	100.00%		D3BNF2              	100.00%
Bootstrap support for Q58936 as seed ortholog is 99%.
Bootstrap support for D3BNF2 as seed ortholog is 99%.

Group of orthologs #54. Best score 237 bits
Score difference with first non-orthologous sequence - M.jannaschii:237 P.pallidum:12

Q58083              	100.00%		D3BK58              	100.00%
Bootstrap support for Q58083 as seed ortholog is 100%.
Bootstrap support for D3BK58 as seed ortholog is 62%.
Alternative seed ortholog is D3BNB9 (12 bits away from this cluster)

Group of orthologs #55. Best score 234 bits
Score difference with first non-orthologous sequence - M.jannaschii:234 P.pallidum:234

Q57731              	100.00%		D3B280              	100.00%
                    	       		D3BV53              	12.50%
Bootstrap support for Q57731 as seed ortholog is 100%.
Bootstrap support for D3B280 as seed ortholog is 100%.

Group of orthologs #56. Best score 228 bits
Score difference with first non-orthologous sequence - M.jannaschii:228 P.pallidum:228

Q57739              	100.00%		D3BP70              	100.00%
Bootstrap support for Q57739 as seed ortholog is 100%.
Bootstrap support for D3BP70 as seed ortholog is 100%.

Group of orthologs #57. Best score 225 bits
Score difference with first non-orthologous sequence - M.jannaschii:225 P.pallidum:146

Q57663              	100.00%		D3B3G3              	100.00%
                    	       		D3B6H9              	100.00%
Bootstrap support for Q57663 as seed ortholog is 100%.
Bootstrap support for D3B3G3 as seed ortholog is 99%.
Bootstrap support for D3B6H9 as seed ortholog is 99%.

Group of orthologs #58. Best score 225 bits
Score difference with first non-orthologous sequence - M.jannaschii:225 P.pallidum:225

Q57911              	100.00%		D3BCX3              	100.00%
Bootstrap support for Q57911 as seed ortholog is 100%.
Bootstrap support for D3BCX3 as seed ortholog is 100%.

Group of orthologs #59. Best score 224 bits
Score difference with first non-orthologous sequence - M.jannaschii:224 P.pallidum:133

Q58130              	100.00%		D3BK71              	100.00%
Q58991              	18.20%		
Bootstrap support for Q58130 as seed ortholog is 100%.
Bootstrap support for D3BK71 as seed ortholog is 99%.

Group of orthologs #60. Best score 222 bits
Score difference with first non-orthologous sequence - M.jannaschii:222 P.pallidum:222

P54014              	100.00%		D3BK20              	100.00%
Bootstrap support for P54014 as seed ortholog is 100%.
Bootstrap support for D3BK20 as seed ortholog is 100%.

Group of orthologs #61. Best score 221 bits
Score difference with first non-orthologous sequence - M.jannaschii:221 P.pallidum:66

Q58884              	100.00%		D3BRF2              	100.00%
Q58371              	23.78%		D3BMT0              	9.06%
Q57809              	18.88%		D3BMR9              	7.98%
Q60275              	7.75%		D3BB39              	7.73%
                    	       		D3BV25              	7.09%
                    	       		D3B0M9              	5.13%
Bootstrap support for Q58884 as seed ortholog is 100%.
Bootstrap support for D3BRF2 as seed ortholog is 88%.

Group of orthologs #62. Best score 221 bits
Score difference with first non-orthologous sequence - M.jannaschii:221 P.pallidum:221

Q58772              	100.00%		D3B9H8              	100.00%
Bootstrap support for Q58772 as seed ortholog is 100%.
Bootstrap support for D3B9H8 as seed ortholog is 100%.

Group of orthologs #63. Best score 219 bits
Score difference with first non-orthologous sequence - M.jannaschii:219 P.pallidum:219

Q57572              	100.00%		D3B0M1              	100.00%
Bootstrap support for Q57572 as seed ortholog is 100%.
Bootstrap support for D3B0M1 as seed ortholog is 100%.

Group of orthologs #64. Best score 218 bits
Score difference with first non-orthologous sequence - M.jannaschii:218 P.pallidum:218

P54017              	100.00%		D3BFD7              	100.00%
Bootstrap support for P54017 as seed ortholog is 100%.
Bootstrap support for D3BFD7 as seed ortholog is 100%.

Group of orthologs #65. Best score 217 bits
Score difference with first non-orthologous sequence - M.jannaschii:217 P.pallidum:217

Q58239              	100.00%		D3AYV1              	100.00%
Bootstrap support for Q58239 as seed ortholog is 100%.
Bootstrap support for D3AYV1 as seed ortholog is 100%.

Group of orthologs #66. Best score 216 bits
Score difference with first non-orthologous sequence - M.jannaschii:216 P.pallidum:216

Q58633              	100.00%		D3BR60              	100.00%
Q57626              	7.79%		
Bootstrap support for Q58633 as seed ortholog is 100%.
Bootstrap support for D3BR60 as seed ortholog is 100%.

Group of orthologs #67. Best score 213 bits
Score difference with first non-orthologous sequence - M.jannaschii:213 P.pallidum:213

Q58369              	100.00%		D3AWU9              	100.00%
Bootstrap support for Q58369 as seed ortholog is 100%.
Bootstrap support for D3AWU9 as seed ortholog is 100%.

Group of orthologs #68. Best score 212 bits
Score difference with first non-orthologous sequence - M.jannaschii:212 P.pallidum:212

Q57761              	100.00%		D3BHT0              	100.00%
Bootstrap support for Q57761 as seed ortholog is 100%.
Bootstrap support for D3BHT0 as seed ortholog is 100%.

Group of orthologs #69. Best score 208 bits
Score difference with first non-orthologous sequence - M.jannaschii:208 P.pallidum:208

Q57984              	100.00%		D3B824              	100.00%
                    	       		D3B7Q7              	9.87%
Bootstrap support for Q57984 as seed ortholog is 100%.
Bootstrap support for D3B824 as seed ortholog is 100%.

Group of orthologs #70. Best score 208 bits
Score difference with first non-orthologous sequence - M.jannaschii:208 P.pallidum:208

Q58027              	100.00%		D3BK65              	100.00%
Bootstrap support for Q58027 as seed ortholog is 100%.
Bootstrap support for D3BK65 as seed ortholog is 100%.

Group of orthologs #71. Best score 204 bits
Score difference with first non-orthologous sequence - M.jannaschii:204 P.pallidum:53

Q57918              	100.00%		D3BU07              	100.00%
Bootstrap support for Q57918 as seed ortholog is 100%.
Bootstrap support for D3BU07 as seed ortholog is 87%.

Group of orthologs #72. Best score 199 bits
Score difference with first non-orthologous sequence - M.jannaschii:199 P.pallidum:199

Q58670              	100.00%		D3B2J9              	100.00%
Bootstrap support for Q58670 as seed ortholog is 100%.
Bootstrap support for D3B2J9 as seed ortholog is 100%.

Group of orthologs #73. Best score 198 bits
Score difference with first non-orthologous sequence - M.jannaschii:198 P.pallidum:25

Q58424              	100.00%		D3BSP0              	100.00%
Bootstrap support for Q58424 as seed ortholog is 100%.
Bootstrap support for D3BSP0 as seed ortholog is 77%.

Group of orthologs #74. Best score 198 bits
Score difference with first non-orthologous sequence - M.jannaschii:198 P.pallidum:198

Q59020              	100.00%		D3BVL5              	100.00%
Bootstrap support for Q59020 as seed ortholog is 100%.
Bootstrap support for D3BVL5 as seed ortholog is 100%.

Group of orthologs #75. Best score 196 bits
Score difference with first non-orthologous sequence - M.jannaschii:196 P.pallidum:196

Q58992              	100.00%		D3BUR5              	100.00%
                    	       		D3B2S5              	56.25%
Bootstrap support for Q58992 as seed ortholog is 100%.
Bootstrap support for D3BUR5 as seed ortholog is 100%.

Group of orthologs #76. Best score 196 bits
Score difference with first non-orthologous sequence - M.jannaschii:196 P.pallidum:3

Q60177              	100.00%		D3BBN6              	100.00%
Bootstrap support for Q60177 as seed ortholog is 100%.
Bootstrap support for D3BBN6 as seed ortholog is 53%.
Alternative seed ortholog is D3BM08 (3 bits away from this cluster)

Group of orthologs #77. Best score 196 bits
Score difference with first non-orthologous sequence - M.jannaschii:196 P.pallidum:196

Q59046              	100.00%		D3BRX9              	100.00%
Bootstrap support for Q59046 as seed ortholog is 100%.
Bootstrap support for D3BRX9 as seed ortholog is 100%.

Group of orthologs #78. Best score 193 bits
Score difference with first non-orthologous sequence - M.jannaschii:193 P.pallidum:193

Q58058              	100.00%		D3BGD9              	100.00%
Bootstrap support for Q58058 as seed ortholog is 100%.
Bootstrap support for D3BGD9 as seed ortholog is 100%.

Group of orthologs #79. Best score 193 bits
Score difference with first non-orthologous sequence - M.jannaschii:193 P.pallidum:193

Q57635              	100.00%		D3BUQ9              	100.00%
Bootstrap support for Q57635 as seed ortholog is 100%.
Bootstrap support for D3BUQ9 as seed ortholog is 100%.

Group of orthologs #80. Best score 192 bits
Score difference with first non-orthologous sequence - M.jannaschii:76 P.pallidum:108

Q58206              	100.00%		D3B7P8              	100.00%
Q58903              	15.81%		D3B0C5              	14.88%
Bootstrap support for Q58206 as seed ortholog is 99%.
Bootstrap support for D3B7P8 as seed ortholog is 99%.

Group of orthologs #81. Best score 192 bits
Score difference with first non-orthologous sequence - M.jannaschii:192 P.pallidum:192

Q57981              	100.00%		D3BTQ4              	100.00%
Bootstrap support for Q57981 as seed ortholog is 100%.
Bootstrap support for D3BTQ4 as seed ortholog is 100%.

Group of orthologs #82. Best score 190 bits
Score difference with first non-orthologous sequence - M.jannaschii:190 P.pallidum:190

Q57834              	100.00%		D3BAK8              	100.00%
Bootstrap support for Q57834 as seed ortholog is 100%.
Bootstrap support for D3BAK8 as seed ortholog is 100%.

Group of orthologs #83. Best score 190 bits
Score difference with first non-orthologous sequence - M.jannaschii:190 P.pallidum:127

Q58839              	100.00%		D3BN56              	100.00%
Bootstrap support for Q58839 as seed ortholog is 100%.
Bootstrap support for D3BN56 as seed ortholog is 99%.

Group of orthologs #84. Best score 188 bits
Score difference with first non-orthologous sequence - M.jannaschii:188 P.pallidum:69

Q58105              	100.00%		D3BCL2              	100.00%
                    	       		D3AY91              	24.27%
Bootstrap support for Q58105 as seed ortholog is 100%.
Bootstrap support for D3BCL2 as seed ortholog is 93%.

Group of orthologs #85. Best score 186 bits
Score difference with first non-orthologous sequence - M.jannaschii:186 P.pallidum:186

Q58542              	100.00%		D3B3Z0              	100.00%
Bootstrap support for Q58542 as seed ortholog is 100%.
Bootstrap support for D3B3Z0 as seed ortholog is 100%.

Group of orthologs #86. Best score 183 bits
Score difference with first non-orthologous sequence - M.jannaschii:183 P.pallidum:183

Q58192              	100.00%		D3BMU1              	100.00%
Bootstrap support for Q58192 as seed ortholog is 100%.
Bootstrap support for D3BMU1 as seed ortholog is 100%.

Group of orthologs #87. Best score 182 bits
Score difference with first non-orthologous sequence - M.jannaschii:182 P.pallidum:182

Q58347              	100.00%		D3BJB3              	100.00%
Bootstrap support for Q58347 as seed ortholog is 100%.
Bootstrap support for D3BJB3 as seed ortholog is 100%.

Group of orthologs #88. Best score 180 bits
Score difference with first non-orthologous sequence - M.jannaschii:180 P.pallidum:37

Q58406              	100.00%		D3BHQ1              	100.00%
Bootstrap support for Q58406 as seed ortholog is 100%.
Bootstrap support for D3BHQ1 as seed ortholog is 81%.

Group of orthologs #89. Best score 179 bits
Score difference with first non-orthologous sequence - M.jannaschii:179 P.pallidum:179

Q57989              	100.00%		D3BM56              	100.00%
Bootstrap support for Q57989 as seed ortholog is 100%.
Bootstrap support for D3BM56 as seed ortholog is 100%.

Group of orthologs #90. Best score 177 bits
Score difference with first non-orthologous sequence - M.jannaschii:177 P.pallidum:68

Q60343              	100.00%		D3BMN0              	100.00%
Bootstrap support for Q60343 as seed ortholog is 100%.
Bootstrap support for D3BMN0 as seed ortholog is 96%.

Group of orthologs #91. Best score 175 bits
Score difference with first non-orthologous sequence - M.jannaschii:175 P.pallidum:175

Q60366              	100.00%		D3BBH9              	100.00%
Q58739              	21.20%		D3AZZ2              	14.71%
Bootstrap support for Q60366 as seed ortholog is 100%.
Bootstrap support for D3BBH9 as seed ortholog is 100%.

Group of orthologs #92. Best score 169 bits
Score difference with first non-orthologous sequence - M.jannaschii:169 P.pallidum:24

Q57725              	100.00%		D3AX55              	100.00%
Bootstrap support for Q57725 as seed ortholog is 100%.
Bootstrap support for D3AX55 as seed ortholog is 67%.
Alternative seed ortholog is D3B6S5 (24 bits away from this cluster)

Group of orthologs #93. Best score 168 bits
Score difference with first non-orthologous sequence - M.jannaschii:168 P.pallidum:58

Q60335              	100.00%		D3BAC3              	100.00%
Bootstrap support for Q60335 as seed ortholog is 100%.
Bootstrap support for D3BAC3 as seed ortholog is 94%.

Group of orthologs #94. Best score 167 bits
Score difference with first non-orthologous sequence - M.jannaschii:167 P.pallidum:18

Q58694              	100.00%		D3B5Y1              	100.00%
Bootstrap support for Q58694 as seed ortholog is 100%.
Bootstrap support for D3B5Y1 as seed ortholog is 71%.
Alternative seed ortholog is D3BJZ6 (18 bits away from this cluster)

Group of orthologs #95. Best score 166 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pallidum:20

Q59050              	100.00%		D3B8B3              	100.00%
Bootstrap support for Q59050 as seed ortholog is 100%.
Bootstrap support for D3B8B3 as seed ortholog is 99%.

Group of orthologs #96. Best score 166 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pallidum:74

Q58725              	100.00%		D3BB47              	100.00%
Bootstrap support for Q58725 as seed ortholog is 100%.
Bootstrap support for D3BB47 as seed ortholog is 99%.

Group of orthologs #97. Best score 166 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pallidum:57

Q57689              	100.00%		D3BJG8              	100.00%
Bootstrap support for Q57689 as seed ortholog is 100%.
Bootstrap support for D3BJG8 as seed ortholog is 81%.

Group of orthologs #98. Best score 165 bits
Score difference with first non-orthologous sequence - M.jannaschii:165 P.pallidum:165

Q60182              	100.00%		D3BM59              	100.00%
Bootstrap support for Q60182 as seed ortholog is 100%.
Bootstrap support for D3BM59 as seed ortholog is 100%.

Group of orthologs #99. Best score 165 bits
Score difference with first non-orthologous sequence - M.jannaschii:165 P.pallidum:165

P60819              	100.00%		D3BT59              	100.00%
Bootstrap support for P60819 as seed ortholog is 100%.
Bootstrap support for D3BT59 as seed ortholog is 100%.

Group of orthologs #100. Best score 163 bits
Score difference with first non-orthologous sequence - M.jannaschii:163 P.pallidum:163

P54045              	100.00%		D3B6G8              	100.00%
Bootstrap support for P54045 as seed ortholog is 100%.
Bootstrap support for D3B6G8 as seed ortholog is 100%.

Group of orthologs #101. Best score 163 bits
Score difference with first non-orthologous sequence - M.jannaschii:163 P.pallidum:163

Q58516              	100.00%		D3B3X6              	100.00%
Bootstrap support for Q58516 as seed ortholog is 100%.
Bootstrap support for D3B3X6 as seed ortholog is 100%.

Group of orthologs #102. Best score 161 bits
Score difference with first non-orthologous sequence - M.jannaschii:161 P.pallidum:161

Q58108              	100.00%		D3B7T8              	100.00%
Bootstrap support for Q58108 as seed ortholog is 100%.
Bootstrap support for D3B7T8 as seed ortholog is 100%.

Group of orthologs #103. Best score 157 bits
Score difference with first non-orthologous sequence - M.jannaschii:157 P.pallidum:157

Q58810              	100.00%		D3B072              	100.00%
Bootstrap support for Q58810 as seed ortholog is 100%.
Bootstrap support for D3B072 as seed ortholog is 100%.

Group of orthologs #104. Best score 154 bits
Score difference with first non-orthologous sequence - M.jannaschii:154 P.pallidum:154

P54063              	100.00%		D3AYQ3              	100.00%
Bootstrap support for P54063 as seed ortholog is 100%.
Bootstrap support for D3AYQ3 as seed ortholog is 100%.

Group of orthologs #105. Best score 151 bits
Score difference with first non-orthologous sequence - M.jannaschii:151 P.pallidum:53

Q59056              	100.00%		D3BB40              	100.00%
                    	       		D3BGA0              	39.58%
                    	       		D3BG99              	36.83%
Bootstrap support for Q59056 as seed ortholog is 100%.
Bootstrap support for D3BB40 as seed ortholog is 86%.

Group of orthologs #106. Best score 150 bits
Score difference with first non-orthologous sequence - M.jannaschii:150 P.pallidum:150

Q58989              	100.00%		D3BIC8              	100.00%
Bootstrap support for Q58989 as seed ortholog is 100%.
Bootstrap support for D3BIC8 as seed ortholog is 100%.

Group of orthologs #107. Best score 149 bits
Score difference with first non-orthologous sequence - M.jannaschii:149 P.pallidum:149

Q58356              	100.00%		D3AVI8              	100.00%
Bootstrap support for Q58356 as seed ortholog is 100%.
Bootstrap support for D3AVI8 as seed ortholog is 100%.

Group of orthologs #108. Best score 149 bits
Score difference with first non-orthologous sequence - M.jannaschii:149 P.pallidum:149

P54040              	100.00%		D3BTV2              	100.00%
Bootstrap support for P54040 as seed ortholog is 100%.
Bootstrap support for D3BTV2 as seed ortholog is 100%.

Group of orthologs #109. Best score 147 bits
Score difference with first non-orthologous sequence - M.jannaschii:78 P.pallidum:147

Q58277              	100.00%		D3BAC0              	100.00%
Bootstrap support for Q58277 as seed ortholog is 95%.
Bootstrap support for D3BAC0 as seed ortholog is 100%.

Group of orthologs #110. Best score 145 bits
Score difference with first non-orthologous sequence - M.jannaschii:145 P.pallidum:145

Q58558              	100.00%		D3AVG7              	100.00%
Bootstrap support for Q58558 as seed ortholog is 100%.
Bootstrap support for D3AVG7 as seed ortholog is 100%.

Group of orthologs #111. Best score 145 bits
Score difference with first non-orthologous sequence - M.jannaschii:145 P.pallidum:13

Q58497              	100.00%		D3AYE6              	100.00%
Bootstrap support for Q58497 as seed ortholog is 100%.
Bootstrap support for D3AYE6 as seed ortholog is 62%.
Alternative seed ortholog is D3BE71 (13 bits away from this cluster)

Group of orthologs #112. Best score 143 bits
Score difference with first non-orthologous sequence - M.jannaschii:143 P.pallidum:39

Q58639              	100.00%		D3B9D6              	100.00%
                    	       		D3BQN9              	42.92%
                    	       		D3B2N2              	41.43%
                    	       		D3BQP1              	30.87%
Bootstrap support for Q58639 as seed ortholog is 100%.
Bootstrap support for D3B9D6 as seed ortholog is 76%.

Group of orthologs #113. Best score 143 bits
Score difference with first non-orthologous sequence - M.jannaschii:143 P.pallidum:80

Q58931              	100.00%		D3BQ30              	100.00%
Bootstrap support for Q58931 as seed ortholog is 100%.
Bootstrap support for D3BQ30 as seed ortholog is 96%.

Group of orthologs #114. Best score 142 bits
Score difference with first non-orthologous sequence - M.jannaschii:142 P.pallidum:142

P54021              	100.00%		D3B615              	100.00%
Bootstrap support for P54021 as seed ortholog is 100%.
Bootstrap support for D3B615 as seed ortholog is 100%.

Group of orthologs #115. Best score 142 bits
Score difference with first non-orthologous sequence - M.jannaschii:142 P.pallidum:142

Q58327              	100.00%		D3BQF5              	100.00%
Bootstrap support for Q58327 as seed ortholog is 100%.
Bootstrap support for D3BQF5 as seed ortholog is 100%.

Group of orthologs #116. Best score 140 bits
Score difference with first non-orthologous sequence - M.jannaschii:140 P.pallidum:59

Q58661              	100.00%		D3BJU6              	100.00%
                    	       		D3BL27              	24.85%
Bootstrap support for Q58661 as seed ortholog is 100%.
Bootstrap support for D3BJU6 as seed ortholog is 99%.

Group of orthologs #117. Best score 140 bits
Score difference with first non-orthologous sequence - M.jannaschii:140 P.pallidum:140

P54012              	100.00%		D3BBQ0              	100.00%
Bootstrap support for P54012 as seed ortholog is 100%.
Bootstrap support for D3BBQ0 as seed ortholog is 100%.

Group of orthologs #118. Best score 139 bits
Score difference with first non-orthologous sequence - M.jannaschii:139 P.pallidum:139

Q60358              	100.00%		D3B6F1              	100.00%
                    	       		D3BMM3              	16.96%
Bootstrap support for Q60358 as seed ortholog is 100%.
Bootstrap support for D3B6F1 as seed ortholog is 100%.

Group of orthologs #119. Best score 138 bits
Score difference with first non-orthologous sequence - M.jannaschii:138 P.pallidum:138

Q58500              	100.00%		D3AVZ8              	100.00%
Bootstrap support for Q58500 as seed ortholog is 100%.
Bootstrap support for D3AVZ8 as seed ortholog is 100%.

Group of orthologs #120. Best score 138 bits
Score difference with first non-orthologous sequence - M.jannaschii:138 P.pallidum:88

Q58237              	100.00%		D3B7E2              	100.00%
Bootstrap support for Q58237 as seed ortholog is 100%.
Bootstrap support for D3B7E2 as seed ortholog is 99%.

Group of orthologs #121. Best score 138 bits
Score difference with first non-orthologous sequence - M.jannaschii:138 P.pallidum:138

P54015              	100.00%		D3BJC7              	100.00%
Bootstrap support for P54015 as seed ortholog is 100%.
Bootstrap support for D3BJC7 as seed ortholog is 100%.

Group of orthologs #122. Best score 134 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pallidum:55

Q60317              	100.00%		D3AWX8              	100.00%
Q58097              	23.59%		
Bootstrap support for Q60317 as seed ortholog is 92%.
Bootstrap support for D3AWX8 as seed ortholog is 88%.

Group of orthologs #123. Best score 134 bits
Score difference with first non-orthologous sequence - M.jannaschii:134 P.pallidum:134

P54109              	100.00%		D3BRK4              	100.00%
Bootstrap support for P54109 as seed ortholog is 100%.
Bootstrap support for D3BRK4 as seed ortholog is 100%.

Group of orthologs #124. Best score 132 bits
Score difference with first non-orthologous sequence - M.jannaschii:132 P.pallidum:132

P54019              	100.00%		D3B1K3              	100.00%
Bootstrap support for P54019 as seed ortholog is 100%.
Bootstrap support for D3B1K3 as seed ortholog is 100%.

Group of orthologs #125. Best score 132 bits
Score difference with first non-orthologous sequence - M.jannaschii:132 P.pallidum:132

Q58998              	100.00%		D3BKB6              	100.00%
Bootstrap support for Q58998 as seed ortholog is 100%.
Bootstrap support for D3BKB6 as seed ortholog is 100%.

Group of orthologs #126. Best score 131 bits
Score difference with first non-orthologous sequence - M.jannaschii:131 P.pallidum:18

Q58146              	100.00%		D3BFU9              	100.00%
                    	       		D3BFU8              	20.77%
Bootstrap support for Q58146 as seed ortholog is 100%.
Bootstrap support for D3BFU9 as seed ortholog is 73%.
Alternative seed ortholog is D3BEP4 (18 bits away from this cluster)

Group of orthologs #127. Best score 131 bits
Score difference with first non-orthologous sequence - M.jannaschii:131 P.pallidum:131

Q57916              	100.00%		D3BIB6              	100.00%
                    	       		D3BIB9              	11.09%
Bootstrap support for Q57916 as seed ortholog is 100%.
Bootstrap support for D3BIB6 as seed ortholog is 100%.

Group of orthologs #128. Best score 130 bits
Score difference with first non-orthologous sequence - M.jannaschii:130 P.pallidum:130

Q58080              	100.00%		D3BJV5              	100.00%
Q58296              	19.07%		
Bootstrap support for Q58080 as seed ortholog is 100%.
Bootstrap support for D3BJV5 as seed ortholog is 100%.

Group of orthologs #129. Best score 130 bits
Score difference with first non-orthologous sequence - M.jannaschii:130 P.pallidum:130

P81291              	100.00%		D3BTY9              	100.00%
Q58409              	37.07%		
Bootstrap support for P81291 as seed ortholog is 100%.
Bootstrap support for D3BTY9 as seed ortholog is 100%.

Group of orthologs #130. Best score 130 bits
Score difference with first non-orthologous sequence - M.jannaschii:130 P.pallidum:130

P54062              	100.00%		D3BV90              	100.00%
Bootstrap support for P54062 as seed ortholog is 100%.
Bootstrap support for D3BV90 as seed ortholog is 100%.

Group of orthologs #131. Best score 130 bits
Score difference with first non-orthologous sequence - M.jannaschii:130 P.pallidum:130

Q60331              	100.00%		D3BT21              	100.00%
Bootstrap support for Q60331 as seed ortholog is 100%.
Bootstrap support for D3BT21 as seed ortholog is 100%.

Group of orthologs #132. Best score 129 bits
Score difference with first non-orthologous sequence - M.jannaschii:129 P.pallidum:129

Q58771              	100.00%		D3B8K6              	100.00%
                    	       		D3B9Q4              	100.00%
Bootstrap support for Q58771 as seed ortholog is 100%.
Bootstrap support for D3B8K6 as seed ortholog is 100%.
Bootstrap support for D3B9Q4 as seed ortholog is 100%.

Group of orthologs #133. Best score 129 bits
Score difference with first non-orthologous sequence - M.jannaschii:129 P.pallidum:129

Q57638              	100.00%		D3AX31              	100.00%
Bootstrap support for Q57638 as seed ortholog is 100%.
Bootstrap support for D3AX31 as seed ortholog is 100%.

Group of orthologs #134. Best score 128 bits
Score difference with first non-orthologous sequence - M.jannaschii:128 P.pallidum:128

Q58519              	100.00%		D3B0A2              	100.00%
Bootstrap support for Q58519 as seed ortholog is 100%.
Bootstrap support for D3B0A2 as seed ortholog is 100%.

Group of orthologs #135. Best score 127 bits
Score difference with first non-orthologous sequence - M.jannaschii:127 P.pallidum:127

Q57636              	100.00%		D3BB09              	100.00%
Bootstrap support for Q57636 as seed ortholog is 100%.
Bootstrap support for D3BB09 as seed ortholog is 100%.

Group of orthologs #136. Best score 127 bits
Score difference with first non-orthologous sequence - M.jannaschii:127 P.pallidum:25

Q58435              	100.00%		D3BI40              	100.00%
Bootstrap support for Q58435 as seed ortholog is 100%.
Bootstrap support for D3BI40 as seed ortholog is 80%.

Group of orthologs #137. Best score 126 bits
Score difference with first non-orthologous sequence - M.jannaschii:126 P.pallidum:30

Q57664              	100.00%		D3BE81              	100.00%
Q58455              	8.13%		D3BCT5              	59.64%
Bootstrap support for Q57664 as seed ortholog is 100%.
Bootstrap support for D3BE81 as seed ortholog is 87%.

Group of orthologs #138. Best score 125 bits
Score difference with first non-orthologous sequence - M.jannaschii:63 P.pallidum:69

Q58501              	100.00%		D3BCL5              	100.00%
                    	       		D3AZL0              	13.29%
Bootstrap support for Q58501 as seed ortholog is 94%.
Bootstrap support for D3BCL5 as seed ortholog is 95%.

Group of orthologs #139. Best score 123 bits
Score difference with first non-orthologous sequence - M.jannaschii:123 P.pallidum:62

Q58026              	100.00%		D3BED4              	100.00%
                    	       		D3AWC2              	27.95%
Bootstrap support for Q58026 as seed ortholog is 100%.
Bootstrap support for D3BED4 as seed ortholog is 94%.

Group of orthologs #140. Best score 122 bits
Score difference with first non-orthologous sequence - M.jannaschii:122 P.pallidum:122

P54043              	100.00%		D3BBQ8              	100.00%
Bootstrap support for P54043 as seed ortholog is 100%.
Bootstrap support for D3BBQ8 as seed ortholog is 100%.

Group of orthologs #141. Best score 121 bits
Score difference with first non-orthologous sequence - M.jannaschii:121 P.pallidum:121

P54037              	100.00%		D3BMX5              	100.00%
Bootstrap support for P54037 as seed ortholog is 100%.
Bootstrap support for D3BMX5 as seed ortholog is 100%.

Group of orthologs #142. Best score 121 bits
Score difference with first non-orthologous sequence - M.jannaschii:121 P.pallidum:5

Q57752              	100.00%		D3BNI8              	100.00%
Bootstrap support for Q57752 as seed ortholog is 100%.
Bootstrap support for D3BNI8 as seed ortholog is 57%.
Alternative seed ortholog is D3BTL1 (5 bits away from this cluster)

Group of orthologs #143. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pallidum:36

Q57586              	100.00%		D3B4F5              	100.00%
Bootstrap support for Q57586 as seed ortholog is 100%.
Bootstrap support for D3B4F5 as seed ortholog is 84%.

Group of orthologs #144. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pallidum:119

P54039              	100.00%		D3BCZ8              	100.00%
Bootstrap support for P54039 as seed ortholog is 100%.
Bootstrap support for D3BCZ8 as seed ortholog is 100%.

Group of orthologs #145. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pallidum:119

Q57963              	100.00%		D3BLP0              	100.00%
Bootstrap support for Q57963 as seed ortholog is 100%.
Bootstrap support for D3BLP0 as seed ortholog is 100%.

Group of orthologs #146. Best score 118 bits
Score difference with first non-orthologous sequence - M.jannaschii:118 P.pallidum:118

P54018              	100.00%		D3B437              	100.00%
Bootstrap support for P54018 as seed ortholog is 100%.
Bootstrap support for D3B437 as seed ortholog is 100%.

Group of orthologs #147. Best score 118 bits
Score difference with first non-orthologous sequence - M.jannaschii:118 P.pallidum:118

P54020              	100.00%		D3BMH8              	100.00%
Bootstrap support for P54020 as seed ortholog is 100%.
Bootstrap support for D3BMH8 as seed ortholog is 100%.

Group of orthologs #148. Best score 116 bits
Score difference with first non-orthologous sequence - M.jannaschii:116 P.pallidum:116

Q57952              	100.00%		D3AW13              	100.00%
Q58915              	11.23%		
Bootstrap support for Q57952 as seed ortholog is 100%.
Bootstrap support for D3AW13 as seed ortholog is 100%.

Group of orthologs #149. Best score 116 bits
Score difference with first non-orthologous sequence - M.jannaschii:40 P.pallidum:116

Q57967              	100.00%		D3AWE7              	100.00%
Q57633              	20.26%		
Bootstrap support for Q57967 as seed ortholog is 88%.
Bootstrap support for D3AWE7 as seed ortholog is 100%.

Group of orthologs #150. Best score 116 bits
Score difference with first non-orthologous sequence - M.jannaschii:116 P.pallidum:116

Q58900              	100.00%		D3BEQ9              	100.00%
                    	       		D3BSS6              	78.29%
Bootstrap support for Q58900 as seed ortholog is 100%.
Bootstrap support for D3BEQ9 as seed ortholog is 100%.

Group of orthologs #151. Best score 116 bits
Score difference with first non-orthologous sequence - M.jannaschii:116 P.pallidum:116

Q58597              	100.00%		D3BMT5              	100.00%
                    	       		D3AY33              	37.55%
Bootstrap support for Q58597 as seed ortholog is 100%.
Bootstrap support for D3BMT5 as seed ortholog is 100%.

Group of orthologs #152. Best score 115 bits
Score difference with first non-orthologous sequence - M.jannaschii:115 P.pallidum:115

P54049              	100.00%		D3AX76              	100.00%
Bootstrap support for P54049 as seed ortholog is 100%.
Bootstrap support for D3AX76 as seed ortholog is 100%.

Group of orthologs #153. Best score 114 bits
Score difference with first non-orthologous sequence - M.jannaschii:114 P.pallidum:114

Q58032              	100.00%		D3BCA4              	100.00%
Bootstrap support for Q58032 as seed ortholog is 100%.
Bootstrap support for D3BCA4 as seed ortholog is 100%.

Group of orthologs #154. Best score 113 bits
Score difference with first non-orthologous sequence - M.jannaschii:113 P.pallidum:113

Q58671              	100.00%		D3BMQ3              	100.00%
                    	       		D3BMX2              	17.74%
Bootstrap support for Q58671 as seed ortholog is 100%.
Bootstrap support for D3BMQ3 as seed ortholog is 100%.

Group of orthologs #155. Best score 113 bits
Score difference with first non-orthologous sequence - M.jannaschii:113 P.pallidum:113

P54042              	100.00%		D3BMQ1              	100.00%
Bootstrap support for P54042 as seed ortholog is 100%.
Bootstrap support for D3BMQ1 as seed ortholog is 100%.

Group of orthologs #156. Best score 113 bits
Score difference with first non-orthologous sequence - M.jannaschii:113 P.pallidum:113

Q58093              	100.00%		D3BN51              	100.00%
Bootstrap support for Q58093 as seed ortholog is 100%.
Bootstrap support for D3BN51 as seed ortholog is 100%.

Group of orthologs #157. Best score 112 bits
Score difference with first non-orthologous sequence - M.jannaschii:112 P.pallidum:112

Q57648              	100.00%		D3AXW3              	100.00%
                    	       		D3B3A4              	6.17%
Bootstrap support for Q57648 as seed ortholog is 100%.
Bootstrap support for D3AXW3 as seed ortholog is 100%.

Group of orthologs #158. Best score 112 bits
Score difference with first non-orthologous sequence - M.jannaschii:112 P.pallidum:112

Q58885              	100.00%		D3BLP5              	100.00%
                    	       		D3B996              	19.57%
Bootstrap support for Q58885 as seed ortholog is 100%.
Bootstrap support for D3BLP5 as seed ortholog is 100%.

Group of orthologs #159. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:111 P.pallidum:111

Q58011              	100.00%		D3B9B9              	100.00%
Bootstrap support for Q58011 as seed ortholog is 100%.
Bootstrap support for D3B9B9 as seed ortholog is 100%.

Group of orthologs #160. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:38 P.pallidum:14

Q58874              	100.00%		D3B9D9              	100.00%
Bootstrap support for Q58874 as seed ortholog is 81%.
Bootstrap support for D3B9D9 as seed ortholog is 61%.
Alternative seed ortholog is D3BE54 (14 bits away from this cluster)

Group of orthologs #161. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:111 P.pallidum:111

P54044              	100.00%		D3BER0              	100.00%
Bootstrap support for P54044 as seed ortholog is 100%.
Bootstrap support for D3BER0 as seed ortholog is 100%.

Group of orthologs #162. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:111 P.pallidum:111

Q60357              	100.00%		D3BKY4              	100.00%
Bootstrap support for Q60357 as seed ortholog is 100%.
Bootstrap support for D3BKY4 as seed ortholog is 100%.

Group of orthologs #163. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:111 P.pallidum:111

Q58761              	100.00%		D3BTS5              	100.00%
Bootstrap support for Q58761 as seed ortholog is 100%.
Bootstrap support for D3BTS5 as seed ortholog is 100%.

Group of orthologs #164. Best score 110 bits
Score difference with first non-orthologous sequence - M.jannaschii:110 P.pallidum:14

Q58634              	100.00%		D3B0N9              	100.00%
Bootstrap support for Q58634 as seed ortholog is 100%.
Bootstrap support for D3B0N9 as seed ortholog is 72%.
Alternative seed ortholog is D3B6G7 (14 bits away from this cluster)

Group of orthologs #165. Best score 109 bits
Score difference with first non-orthologous sequence - M.jannaschii:109 P.pallidum:7

Q58270              	100.00%		D3BIM9              	100.00%
                    	       		D3BB15              	52.87%
Bootstrap support for Q58270 as seed ortholog is 100%.
Bootstrap support for D3BIM9 as seed ortholog is 61%.
Alternative seed ortholog is D3BSN3 (7 bits away from this cluster)

Group of orthologs #166. Best score 109 bits
Score difference with first non-orthologous sequence - M.jannaschii:109 P.pallidum:109

P54024              	100.00%		D3BHJ3              	100.00%
Bootstrap support for P54024 as seed ortholog is 100%.
Bootstrap support for D3BHJ3 as seed ortholog is 100%.

Group of orthologs #167. Best score 106 bits
Score difference with first non-orthologous sequence - M.jannaschii:106 P.pallidum:106

P54034              	100.00%		D3BBF0              	100.00%
Bootstrap support for P54034 as seed ortholog is 100%.
Bootstrap support for D3BBF0 as seed ortholog is 100%.

Group of orthologs #168. Best score 105 bits
Score difference with first non-orthologous sequence - M.jannaschii:105 P.pallidum:105

Q58760              	100.00%		D3AYF8              	100.00%
Bootstrap support for Q58760 as seed ortholog is 100%.
Bootstrap support for D3AYF8 as seed ortholog is 100%.

Group of orthologs #169. Best score 104 bits
Score difference with first non-orthologous sequence - M.jannaschii:104 P.pallidum:104

Q58554              	100.00%		D3BVI7              	100.00%
Bootstrap support for Q58554 as seed ortholog is 100%.
Bootstrap support for D3BVI7 as seed ortholog is 100%.

Group of orthologs #170. Best score 102 bits
Score difference with first non-orthologous sequence - M.jannaschii:102 P.pallidum:102

Q57675              	100.00%		D3BUD3              	100.00%
                    	       		D3BUC4              	61.97%
Bootstrap support for Q57675 as seed ortholog is 100%.
Bootstrap support for D3BUD3 as seed ortholog is 100%.

Group of orthologs #171. Best score 101 bits
Score difference with first non-orthologous sequence - M.jannaschii:101 P.pallidum:101

Q57581              	100.00%		D3AZF5              	100.00%
Bootstrap support for Q57581 as seed ortholog is 100%.
Bootstrap support for D3AZF5 as seed ortholog is 100%.

Group of orthologs #172. Best score 101 bits
Score difference with first non-orthologous sequence - M.jannaschii:101 P.pallidum:101

P54057              	100.00%		D3BTV9              	100.00%
Bootstrap support for P54057 as seed ortholog is 100%.
Bootstrap support for D3BTV9 as seed ortholog is 100%.

Group of orthologs #173. Best score 98 bits
Score difference with first non-orthologous sequence - M.jannaschii:98 P.pallidum:98

Q60363              	100.00%		D3BV55              	100.00%
Bootstrap support for Q60363 as seed ortholog is 100%.
Bootstrap support for D3BV55 as seed ortholog is 100%.

Group of orthologs #174. Best score 97 bits
Score difference with first non-orthologous sequence - M.jannaschii:97 P.pallidum:97

Q57697              	100.00%		D3BSY5              	100.00%
Bootstrap support for Q57697 as seed ortholog is 100%.
Bootstrap support for D3BSY5 as seed ortholog is 100%.

Group of orthologs #175. Best score 96 bits
Score difference with first non-orthologous sequence - M.jannaschii:96 P.pallidum:96

Q58370              	100.00%		D3BL83              	100.00%
Bootstrap support for Q58370 as seed ortholog is 100%.
Bootstrap support for D3BL83 as seed ortholog is 100%.

Group of orthologs #176. Best score 95 bits
Score difference with first non-orthologous sequence - M.jannaschii:95 P.pallidum:95

Q57878              	100.00%		D3AXY2              	100.00%
                    	       		D3BE34              	13.28%
Bootstrap support for Q57878 as seed ortholog is 100%.
Bootstrap support for D3AXY2 as seed ortholog is 100%.

Group of orthologs #177. Best score 94 bits
Score difference with first non-orthologous sequence - M.jannaschii:94 P.pallidum:94

Q58343              	100.00%		D3B5E3              	100.00%
                    	       		D3BSB5              	45.83%
Bootstrap support for Q58343 as seed ortholog is 100%.
Bootstrap support for D3B5E3 as seed ortholog is 100%.

Group of orthologs #178. Best score 94 bits
Score difference with first non-orthologous sequence - M.jannaschii:94 P.pallidum:94

Q57936              	100.00%		D3BQU8              	100.00%
Q58758              	31.75%		
Bootstrap support for Q57936 as seed ortholog is 100%.
Bootstrap support for D3BQU8 as seed ortholog is 100%.

Group of orthologs #179. Best score 94 bits
Score difference with first non-orthologous sequence - M.jannaschii:94 P.pallidum:49

Q59002              	100.00%		D3BF15              	100.00%
Bootstrap support for Q59002 as seed ortholog is 100%.
Bootstrap support for D3BF15 as seed ortholog is 88%.

Group of orthologs #180. Best score 93 bits
Score difference with first non-orthologous sequence - M.jannaschii:93 P.pallidum:93

Q57907              	100.00%		D3B7L1              	100.00%
Bootstrap support for Q57907 as seed ortholog is 100%.
Bootstrap support for D3B7L1 as seed ortholog is 100%.

Group of orthologs #181. Best score 93 bits
Score difference with first non-orthologous sequence - M.jannaschii:93 P.pallidum:93

Q59055              	100.00%		D3BPW7              	100.00%
Bootstrap support for Q59055 as seed ortholog is 100%.
Bootstrap support for D3BPW7 as seed ortholog is 100%.

Group of orthologs #182. Best score 92 bits
Score difference with first non-orthologous sequence - M.jannaschii:92 P.pallidum:92

Q58216              	100.00%		D3B632              	100.00%
                    	       		D3BP59              	5.07%
Bootstrap support for Q58216 as seed ortholog is 100%.
Bootstrap support for D3B632 as seed ortholog is 100%.

Group of orthologs #183. Best score 92 bits
Score difference with first non-orthologous sequence - M.jannaschii:92 P.pallidum:1

Q58065              	100.00%		D3BHW4              	100.00%
Bootstrap support for Q58065 as seed ortholog is 100%.
Bootstrap support for D3BHW4 as seed ortholog is 46%.
Alternative seed ortholog is D3B4D7 (1 bits away from this cluster)

Group of orthologs #184. Best score 92 bits
Score difference with first non-orthologous sequence - M.jannaschii:92 P.pallidum:92

Q60346              	100.00%		D3BG94              	100.00%
Bootstrap support for Q60346 as seed ortholog is 100%.
Bootstrap support for D3BG94 as seed ortholog is 100%.

Group of orthologs #185. Best score 91 bits
Score difference with first non-orthologous sequence - M.jannaschii:91 P.pallidum:91

Q58859              	100.00%		D3BVN2              	100.00%
                    	       		D3AYJ1              	9.28%
Bootstrap support for Q58859 as seed ortholog is 100%.
Bootstrap support for D3BVN2 as seed ortholog is 100%.

Group of orthologs #186. Best score 91 bits
Score difference with first non-orthologous sequence - M.jannaschii:91 P.pallidum:91

P54036              	100.00%		D3AW89              	100.00%
Bootstrap support for P54036 as seed ortholog is 100%.
Bootstrap support for D3AW89 as seed ortholog is 100%.

Group of orthologs #187. Best score 90 bits
Score difference with first non-orthologous sequence - M.jannaschii:90 P.pallidum:90

Q57891              	100.00%		D3BM80              	100.00%
Bootstrap support for Q57891 as seed ortholog is 100%.
Bootstrap support for D3BM80 as seed ortholog is 100%.

Group of orthologs #188. Best score 89 bits
Score difference with first non-orthologous sequence - M.jannaschii:89 P.pallidum:89

Q58487              	100.00%		D3B2F2              	100.00%
Bootstrap support for Q58487 as seed ortholog is 100%.
Bootstrap support for D3B2F2 as seed ortholog is 100%.

Group of orthologs #189. Best score 89 bits
Score difference with first non-orthologous sequence - M.jannaschii:89 P.pallidum:89

Q58619              	100.00%		D3BEQ8              	100.00%
Bootstrap support for Q58619 as seed ortholog is 100%.
Bootstrap support for D3BEQ8 as seed ortholog is 100%.

Group of orthologs #190. Best score 88 bits
Score difference with first non-orthologous sequence - M.jannaschii:88 P.pallidum:23

Q58969              	100.00%		D3B6C6              	100.00%
                    	       		D3B5X2              	12.80%
                    	       		D3B2W2              	9.96%
                    	       		D3B6E1              	8.81%
                    	       		D3BSG3              	8.60%
                    	       		D3BBD1              	8.47%
                    	       		D3BEH4              	8.13%
                    	       		D3BK57              	7.93%
                    	       		D3AWF9              	7.59%
                    	       		D3BA83              	7.05%
                    	       		D3B229              	5.42%
Bootstrap support for Q58969 as seed ortholog is 100%.
Bootstrap support for D3B6C6 as seed ortholog is 65%.
Alternative seed ortholog is D3BMB3 (23 bits away from this cluster)

Group of orthologs #191. Best score 88 bits
Score difference with first non-orthologous sequence - M.jannaschii:88 P.pallidum:88

Q58119              	100.00%		D3BIJ6              	100.00%
                    	       		D3BAX5              	32.80%
Bootstrap support for Q58119 as seed ortholog is 100%.
Bootstrap support for D3BIJ6 as seed ortholog is 100%.

Group of orthologs #192. Best score 87 bits
Score difference with first non-orthologous sequence - M.jannaschii:87 P.pallidum:87

Q60352              	100.00%		D3BU45              	100.00%
Bootstrap support for Q60352 as seed ortholog is 100%.
Bootstrap support for D3BU45 as seed ortholog is 100%.

Group of orthologs #193. Best score 86 bits
Score difference with first non-orthologous sequence - M.jannaschii:86 P.pallidum:86

Q57709              	100.00%		D3BAG9              	100.00%
Bootstrap support for Q57709 as seed ortholog is 100%.
Bootstrap support for D3BAG9 as seed ortholog is 100%.

Group of orthologs #194. Best score 86 bits
Score difference with first non-orthologous sequence - M.jannaschii:86 P.pallidum:86

Q58759              	100.00%		D3BIM4              	100.00%
Bootstrap support for Q58759 as seed ortholog is 100%.
Bootstrap support for D3BIM4 as seed ortholog is 100%.

Group of orthologs #195. Best score 86 bits
Score difference with first non-orthologous sequence - M.jannaschii:86 P.pallidum:86

Q57573              	100.00%		D3BM60              	100.00%
Bootstrap support for Q57573 as seed ortholog is 100%.
Bootstrap support for D3BM60 as seed ortholog is 100%.

Group of orthologs #196. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pallidum:85

Q57741              	100.00%		D3B3D8              	100.00%
Bootstrap support for Q57741 as seed ortholog is 100%.
Bootstrap support for D3B3D8 as seed ortholog is 100%.

Group of orthologs #197. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pallidum:85

Q58338              	100.00%		D3BR47              	100.00%
Bootstrap support for Q58338 as seed ortholog is 100%.
Bootstrap support for D3BR47 as seed ortholog is 100%.

Group of orthologs #198. Best score 84 bits
Score difference with first non-orthologous sequence - M.jannaschii:84 P.pallidum:84

P54029              	100.00%		D3B9Y5              	100.00%
Bootstrap support for P54029 as seed ortholog is 100%.
Bootstrap support for D3B9Y5 as seed ortholog is 100%.

Group of orthologs #199. Best score 83 bits
Score difference with first non-orthologous sequence - M.jannaschii:83 P.pallidum:83

Q58450              	100.00%		D3B3B6              	100.00%
Bootstrap support for Q58450 as seed ortholog is 100%.
Bootstrap support for D3B3B6 as seed ortholog is 100%.

Group of orthologs #200. Best score 83 bits
Score difference with first non-orthologous sequence - M.jannaschii:83 P.pallidum:83

P54050              	100.00%		D3BAC7              	100.00%
Bootstrap support for P54050 as seed ortholog is 100%.
Bootstrap support for D3BAC7 as seed ortholog is 100%.

Group of orthologs #201. Best score 83 bits
Score difference with first non-orthologous sequence - M.jannaschii:83 P.pallidum:83

P54059              	100.00%		D3BEH6              	100.00%
Bootstrap support for P54059 as seed ortholog is 100%.
Bootstrap support for D3BEH6 as seed ortholog is 100%.

Group of orthologs #202. Best score 83 bits
Score difference with first non-orthologous sequence - M.jannaschii:83 P.pallidum:26

Q58339              	100.00%		D3BUL3              	100.00%
Bootstrap support for Q58339 as seed ortholog is 100%.
Bootstrap support for D3BUL3 as seed ortholog is 78%.

Group of orthologs #203. Best score 82 bits
Score difference with first non-orthologous sequence - M.jannaschii:82 P.pallidum:82

Q59047              	100.00%		D3BPA7              	100.00%
Q59043              	41.11%		
Bootstrap support for Q59047 as seed ortholog is 100%.
Bootstrap support for D3BPA7 as seed ortholog is 100%.

Group of orthologs #204. Best score 82 bits
Score difference with first non-orthologous sequence - M.jannaschii:82 P.pallidum:82

Q58442              	100.00%		D3BAS9              	100.00%
Bootstrap support for Q58442 as seed ortholog is 100%.
Bootstrap support for D3BAS9 as seed ortholog is 100%.

Group of orthologs #205. Best score 82 bits
Score difference with first non-orthologous sequence - M.jannaschii:82 P.pallidum:82

Q58660              	100.00%		D3BTI9              	100.00%
Bootstrap support for Q58660 as seed ortholog is 100%.
Bootstrap support for D3BTI9 as seed ortholog is 100%.

Group of orthologs #206. Best score 81 bits
Score difference with first non-orthologous sequence - M.jannaschii:81 P.pallidum:81

Q58352              	100.00%		D3B7J9              	100.00%
                    	       		D3BKQ8              	6.69%
Bootstrap support for Q58352 as seed ortholog is 100%.
Bootstrap support for D3B7J9 as seed ortholog is 100%.

Group of orthologs #207. Best score 81 bits
Score difference with first non-orthologous sequence - M.jannaschii:81 P.pallidum:81

P54051              	100.00%		D3BIL1              	100.00%
Bootstrap support for P54051 as seed ortholog is 100%.
Bootstrap support for D3BIL1 as seed ortholog is 100%.

Group of orthologs #208. Best score 80 bits
Score difference with first non-orthologous sequence - M.jannaschii:80 P.pallidum:80

Q57679              	100.00%		D3BEM8              	100.00%
Bootstrap support for Q57679 as seed ortholog is 100%.
Bootstrap support for D3BEM8 as seed ortholog is 100%.

Group of orthologs #209. Best score 80 bits
Score difference with first non-orthologous sequence - M.jannaschii:80 P.pallidum:80

P54030              	100.00%		D3BPW6              	100.00%
Bootstrap support for P54030 as seed ortholog is 100%.
Bootstrap support for D3BPW6 as seed ortholog is 100%.

Group of orthologs #210. Best score 80 bits
Score difference with first non-orthologous sequence - M.jannaschii:80 P.pallidum:80

P54033              	100.00%		D3BQU5              	100.00%
Bootstrap support for P54033 as seed ortholog is 100%.
Bootstrap support for D3BQU5 as seed ortholog is 100%.

Group of orthologs #211. Best score 79 bits
Score difference with first non-orthologous sequence - M.jannaschii:79 P.pallidum:79

Q58595              	100.00%		D3BHS9              	100.00%
Q58787              	46.14%		
Q57926              	32.43%		
Bootstrap support for Q58595 as seed ortholog is 100%.
Bootstrap support for D3BHS9 as seed ortholog is 100%.

Group of orthologs #212. Best score 78 bits
Score difference with first non-orthologous sequence - M.jannaschii:78 P.pallidum:78

Q58762              	100.00%		D3BRS1              	100.00%
Q58283              	7.69%		
Q57554              	6.71%		
Q58663              	5.33%		
Bootstrap support for Q58762 as seed ortholog is 100%.
Bootstrap support for D3BRS1 as seed ortholog is 100%.

Group of orthologs #213. Best score 78 bits
Score difference with first non-orthologous sequence - M.jannaschii:78 P.pallidum:4

Q58377              	100.00%		D3BB72              	100.00%
Bootstrap support for Q58377 as seed ortholog is 100%.
Bootstrap support for D3BB72 as seed ortholog is 42%.
Alternative seed ortholog is D3BBC8 (4 bits away from this cluster)

Group of orthologs #214. Best score 78 bits
Score difference with first non-orthologous sequence - M.jannaschii:78 P.pallidum:14

P54066              	100.00%		D3BJB1              	100.00%
Bootstrap support for P54066 as seed ortholog is 100%.
Bootstrap support for D3BJB1 as seed ortholog is 80%.

Group of orthologs #215. Best score 77 bits
Score difference with first non-orthologous sequence - M.jannaschii:77 P.pallidum:77

Q58977              	100.00%		D3BMJ3              	100.00%
                    	       		D3B972              	8.56%
                    	       		D3BPG4              	5.71%
Bootstrap support for Q58977 as seed ortholog is 100%.
Bootstrap support for D3BMJ3 as seed ortholog is 100%.

Group of orthologs #216. Best score 77 bits
Score difference with first non-orthologous sequence - M.jannaschii:77 P.pallidum:30

Q58588              	100.00%		D3BFK0              	100.00%
                    	       		D3B4R6              	20.32%
Bootstrap support for Q58588 as seed ortholog is 100%.
Bootstrap support for D3BFK0 as seed ortholog is 82%.

Group of orthologs #217. Best score 76 bits
Score difference with first non-orthologous sequence - M.jannaschii:76 P.pallidum:76

Q57711              	100.00%		D3AWT2              	100.00%
Q58350              	42.72%		
O06917              	15.07%		
Bootstrap support for Q57711 as seed ortholog is 100%.
Bootstrap support for D3AWT2 as seed ortholog is 100%.

Group of orthologs #218. Best score 76 bits
Score difference with first non-orthologous sequence - M.jannaschii:76 P.pallidum:76

Q57930              	100.00%		D3BM88              	100.00%
Bootstrap support for Q57930 as seed ortholog is 100%.
Bootstrap support for D3BM88 as seed ortholog is 100%.

Group of orthologs #219. Best score 75 bits
Score difference with first non-orthologous sequence - M.jannaschii:75 P.pallidum:75

Q58916              	100.00%		D3BNN9              	100.00%
Q60362              	42.88%		
Bootstrap support for Q58916 as seed ortholog is 100%.
Bootstrap support for D3BNN9 as seed ortholog is 100%.

Group of orthologs #220. Best score 75 bits
Score difference with first non-orthologous sequence - M.jannaschii:75 P.pallidum:75

P54026              	100.00%		D3BIR0              	100.00%
Bootstrap support for P54026 as seed ortholog is 100%.
Bootstrap support for D3BIR0 as seed ortholog is 100%.

Group of orthologs #221. Best score 75 bits
Score difference with first non-orthologous sequence - M.jannaschii:75 P.pallidum:75

Q57598              	100.00%		D3BPL5              	100.00%
Bootstrap support for Q57598 as seed ortholog is 100%.
Bootstrap support for D3BPL5 as seed ortholog is 100%.

Group of orthologs #222. Best score 74 bits
Score difference with first non-orthologous sequence - M.jannaschii:74 P.pallidum:2

Q57899              	100.00%		D3B3V0              	100.00%
                    	       		D3BJJ8              	25.24%
                    	       		D3B307              	24.49%
                    	       		D3AW52              	20.87%
Bootstrap support for Q57899 as seed ortholog is 100%.
Bootstrap support for D3B3V0 as seed ortholog is 53%.
Alternative seed ortholog is D3AXB9 (2 bits away from this cluster)

Group of orthologs #223. Best score 74 bits
Score difference with first non-orthologous sequence - M.jannaschii:74 P.pallidum:74

P54038              	100.00%		D3AVM9              	100.00%
Bootstrap support for P54038 as seed ortholog is 100%.
Bootstrap support for D3AVM9 as seed ortholog is 100%.

Group of orthologs #224. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pallidum:72

Q58040              	100.00%		D3B465              	100.00%
Bootstrap support for Q58040 as seed ortholog is 100%.
Bootstrap support for D3B465 as seed ortholog is 100%.

Group of orthologs #225. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pallidum:21

Q57872              	100.00%		D3BNW5              	100.00%
Bootstrap support for Q57872 as seed ortholog is 100%.
Bootstrap support for D3BNW5 as seed ortholog is 75%.

Group of orthologs #226. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pallidum:72

Q59000              	100.00%		D3BPW9              	100.00%
Bootstrap support for Q59000 as seed ortholog is 100%.
Bootstrap support for D3BPW9 as seed ortholog is 100%.

Group of orthologs #227. Best score 71 bits
Score difference with first non-orthologous sequence - M.jannaschii:71 P.pallidum:71

P54023              	100.00%		D3B4A0              	100.00%
Bootstrap support for P54023 as seed ortholog is 100%.
Bootstrap support for D3B4A0 as seed ortholog is 100%.

Group of orthologs #228. Best score 71 bits
Score difference with first non-orthologous sequence - M.jannaschii:71 P.pallidum:10

Q58711              	100.00%		D3BB69              	100.00%
Bootstrap support for Q58711 as seed ortholog is 100%.
Bootstrap support for D3BB69 as seed ortholog is 83%.

Group of orthologs #229. Best score 71 bits
Score difference with first non-orthologous sequence - M.jannaschii:71 P.pallidum:71

Q57990              	100.00%		D3BEM9              	100.00%
Bootstrap support for Q57990 as seed ortholog is 100%.
Bootstrap support for D3BEM9 as seed ortholog is 100%.

Group of orthologs #230. Best score 70 bits
Score difference with first non-orthologous sequence - M.jannaschii:70 P.pallidum:70

Q58941              	100.00%		D3BUM9              	100.00%
                    	       		D3AXQ3              	52.38%
Bootstrap support for Q58941 as seed ortholog is 100%.
Bootstrap support for D3BUM9 as seed ortholog is 100%.

Group of orthologs #231. Best score 70 bits
Score difference with first non-orthologous sequence - M.jannaschii:70 P.pallidum:70

Q58625              	100.00%		D3BPP6              	100.00%
Bootstrap support for Q58625 as seed ortholog is 100%.
Bootstrap support for D3BPP6 as seed ortholog is 100%.

Group of orthologs #232. Best score 69 bits
Score difference with first non-orthologous sequence - M.jannaschii:69 P.pallidum:69

Q58741              	100.00%		D3BRL5              	100.00%
                    	       		D3AYV5              	13.08%
Bootstrap support for Q58741 as seed ortholog is 100%.
Bootstrap support for D3BRL5 as seed ortholog is 100%.

Group of orthologs #233. Best score 68 bits
Score difference with first non-orthologous sequence - M.jannaschii:68 P.pallidum:68

Q58220              	100.00%		D3B2R4              	100.00%
Bootstrap support for Q58220 as seed ortholog is 100%.
Bootstrap support for D3B2R4 as seed ortholog is 100%.

Group of orthologs #234. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pallidum:67

Q58944              	100.00%		D3B3F1              	100.00%
                    	       		D3BPS6              	26.71%
                    	       		D3BJJ1              	18.32%
                    	       		D3BCX1              	17.06%
Bootstrap support for Q58944 as seed ortholog is 100%.
Bootstrap support for D3B3F1 as seed ortholog is 100%.

Group of orthologs #235. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pallidum:67

Q60176              	100.00%		D3B7L8              	100.00%
                    	       		D3BQC7              	46.13%
                    	       		D3BR71              	45.79%
Bootstrap support for Q60176 as seed ortholog is 100%.
Bootstrap support for D3B7L8 as seed ortholog is 100%.

Group of orthologs #236. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pallidum:67

P54047              	100.00%		D3BTU3              	100.00%
Bootstrap support for P54047 as seed ortholog is 100%.
Bootstrap support for D3BTU3 as seed ortholog is 100%.

Group of orthologs #237. Best score 66 bits
Score difference with first non-orthologous sequence - M.jannaschii:66 P.pallidum:14

Q58925              	100.00%		D3B439              	100.00%
Bootstrap support for Q58925 as seed ortholog is 100%.
Bootstrap support for D3B439 as seed ortholog is 70%.
Alternative seed ortholog is D3AXF9 (14 bits away from this cluster)

Group of orthologs #238. Best score 66 bits
Score difference with first non-orthologous sequence - M.jannaschii:66 P.pallidum:66

Q58860              	100.00%		D3B961              	100.00%
Bootstrap support for Q58860 as seed ortholog is 100%.
Bootstrap support for D3B961 as seed ortholog is 100%.

Group of orthologs #239. Best score 66 bits
Score difference with first non-orthologous sequence - M.jannaschii:66 P.pallidum:66

Q58540              	100.00%		D3BBV1              	100.00%
Bootstrap support for Q58540 as seed ortholog is 100%.
Bootstrap support for D3BBV1 as seed ortholog is 100%.

Group of orthologs #240. Best score 65 bits
Score difference with first non-orthologous sequence - M.jannaschii:65 P.pallidum:65

Q57955              	100.00%		D3BFW0              	100.00%
Bootstrap support for Q57955 as seed ortholog is 100%.
Bootstrap support for D3BFW0 as seed ortholog is 100%.

Group of orthologs #241. Best score 65 bits
Score difference with first non-orthologous sequence - M.jannaschii:16 P.pallidum:6

Q58622              	100.00%		D3BQ52              	100.00%
Bootstrap support for Q58622 as seed ortholog is 76%.
Bootstrap support for D3BQ52 as seed ortholog is 55%.
Alternative seed ortholog is D3BJ92 (6 bits away from this cluster)

Group of orthologs #242. Best score 64 bits
Score difference with first non-orthologous sequence - M.jannaschii:64 P.pallidum:64

P54061              	100.00%		D3AZM6              	100.00%
Bootstrap support for P54061 as seed ortholog is 100%.
Bootstrap support for D3AZM6 as seed ortholog is 100%.

Group of orthologs #243. Best score 64 bits
Score difference with first non-orthologous sequence - M.jannaschii:64 P.pallidum:20

Q58276              	100.00%		D3BAZ9              	100.00%
Bootstrap support for Q58276 as seed ortholog is 100%.
Bootstrap support for D3BAZ9 as seed ortholog is 83%.

Group of orthologs #244. Best score 64 bits
Score difference with first non-orthologous sequence - M.jannaschii:64 P.pallidum:64

Q58832              	100.00%		D3BTQ1              	100.00%
Bootstrap support for Q58832 as seed ortholog is 100%.
Bootstrap support for D3BTQ1 as seed ortholog is 100%.

Group of orthologs #245. Best score 62 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pallidum:62

Q57887              	100.00%		D3B6S2              	100.00%
Bootstrap support for Q57887 as seed ortholog is 100%.
Bootstrap support for D3B6S2 as seed ortholog is 100%.

Group of orthologs #246. Best score 62 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pallidum:62

Q58070              	100.00%		D3B8X3              	100.00%
Bootstrap support for Q58070 as seed ortholog is 100%.
Bootstrap support for D3B8X3 as seed ortholog is 100%.

Group of orthologs #247. Best score 61 bits
Score difference with first non-orthologous sequence - M.jannaschii:61 P.pallidum:61

Q58113              	100.00%		D3B0K1              	100.00%
Bootstrap support for Q58113 as seed ortholog is 100%.
Bootstrap support for D3B0K1 as seed ortholog is 100%.

Group of orthologs #248. Best score 61 bits
Score difference with first non-orthologous sequence - M.jannaschii:3 P.pallidum:1

Q58332              	100.00%		D3B230              	100.00%
Bootstrap support for Q58332 as seed ortholog is 55%.
Alternative seed ortholog is Q57647 (3 bits away from this cluster)
Bootstrap support for D3B230 as seed ortholog is 44%.
Alternative seed ortholog is D3BJ92 (1 bits away from this cluster)

Group of orthologs #249. Best score 60 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pallidum:60

Q58923              	100.00%		D3AX99              	100.00%
                    	       		D3B782              	73.66%
Bootstrap support for Q58923 as seed ortholog is 100%.
Bootstrap support for D3AX99 as seed ortholog is 100%.

Group of orthologs #250. Best score 60 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pallidum:60

Q58457              	100.00%		D3B6Y1              	100.00%
Bootstrap support for Q58457 as seed ortholog is 100%.
Bootstrap support for D3B6Y1 as seed ortholog is 100%.

Group of orthologs #251. Best score 60 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pallidum:60

Q58896              	100.00%		D3B669              	100.00%
Bootstrap support for Q58896 as seed ortholog is 100%.
Bootstrap support for D3B669 as seed ortholog is 100%.

Group of orthologs #252. Best score 60 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pallidum:60

Q57846              	100.00%		D3BKA5              	100.00%
Bootstrap support for Q57846 as seed ortholog is 100%.
Bootstrap support for D3BKA5 as seed ortholog is 100%.

Group of orthologs #253. Best score 59 bits
Score difference with first non-orthologous sequence - M.jannaschii:59 P.pallidum:59

Q58372              	100.00%		D3BDA7              	100.00%
Bootstrap support for Q58372 as seed ortholog is 100%.
Bootstrap support for D3BDA7 as seed ortholog is 100%.

Group of orthologs #254. Best score 58 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pallidum:58

P54027              	100.00%		D3B7U1              	100.00%
Bootstrap support for P54027 as seed ortholog is 100%.
Bootstrap support for D3B7U1 as seed ortholog is 100%.

Group of orthologs #255. Best score 58 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pallidum:58

Q57757              	100.00%		D3BL89              	100.00%
Bootstrap support for Q57757 as seed ortholog is 100%.
Bootstrap support for D3BL89 as seed ortholog is 100%.

Group of orthologs #256. Best score 58 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pallidum:58

Q58103              	100.00%		D3BM22              	100.00%
Bootstrap support for Q58103 as seed ortholog is 100%.
Bootstrap support for D3BM22 as seed ortholog is 100%.

Group of orthologs #257. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:57 P.pallidum:57

Q60179              	100.00%		D3BV85              	100.00%
                    	       		D3BRT1              	17.99%
Bootstrap support for Q60179 as seed ortholog is 100%.
Bootstrap support for D3BV85 as seed ortholog is 100%.

Group of orthologs #258. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:57 P.pallidum:57

Q58092              	100.00%		D3BCH5              	100.00%
Bootstrap support for Q58092 as seed ortholog is 100%.
Bootstrap support for D3BCH5 as seed ortholog is 100%.

Group of orthologs #259. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pallidum:56

P54022              	100.00%		D3BBP3              	100.00%
Bootstrap support for P54022 as seed ortholog is 100%.
Bootstrap support for D3BBP3 as seed ortholog is 100%.

Group of orthologs #260. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pallidum:56

Q58629              	100.00%		D3BGN8              	100.00%
Bootstrap support for Q58629 as seed ortholog is 100%.
Bootstrap support for D3BGN8 as seed ortholog is 100%.

Group of orthologs #261. Best score 55 bits
Score difference with first non-orthologous sequence - M.jannaschii:55 P.pallidum:55

P54046              	100.00%		D3BVG5              	100.00%
Bootstrap support for P54046 as seed ortholog is 100%.
Bootstrap support for D3BVG5 as seed ortholog is 100%.

Group of orthologs #262. Best score 54 bits
Score difference with first non-orthologous sequence - M.jannaschii:54 P.pallidum:11

Q58604              	100.00%		D3B458              	100.00%
                    	       		D3B4B0              	54.63%
Bootstrap support for Q58604 as seed ortholog is 100%.
Bootstrap support for D3B458 as seed ortholog is 68%.
Alternative seed ortholog is D3BIV1 (11 bits away from this cluster)

Group of orthologs #263. Best score 54 bits
Score difference with first non-orthologous sequence - M.jannaschii:54 P.pallidum:54

Q58970              	100.00%		D3BR85              	100.00%
Q57690              	16.22%		
Bootstrap support for Q58970 as seed ortholog is 100%.
Bootstrap support for D3BR85 as seed ortholog is 100%.

Group of orthologs #264. Best score 54 bits
Score difference with first non-orthologous sequence - M.jannaschii:54 P.pallidum:54

Q57997              	100.00%		D3BKW5              	100.00%
Bootstrap support for Q57997 as seed ortholog is 100%.
Bootstrap support for D3BKW5 as seed ortholog is 100%.

Group of orthologs #265. Best score 54 bits
Score difference with first non-orthologous sequence - M.jannaschii:54 P.pallidum:54

Q57951              	100.00%		D3BL96              	100.00%
Bootstrap support for Q57951 as seed ortholog is 100%.
Bootstrap support for D3BL96 as seed ortholog is 100%.

Group of orthologs #266. Best score 52 bits
Score difference with first non-orthologous sequence - M.jannaschii:52 P.pallidum:52

Q58461              	100.00%		D3BIW4              	100.00%
Bootstrap support for Q58461 as seed ortholog is 100%.
Bootstrap support for D3BIW4 as seed ortholog is 100%.

Group of orthologs #267. Best score 52 bits
Score difference with first non-orthologous sequence - M.jannaschii:52 P.pallidum:52

Q58414              	100.00%		D3BSA4              	100.00%
Bootstrap support for Q58414 as seed ortholog is 100%.
Bootstrap support for D3BSA4 as seed ortholog is 100%.

Group of orthologs #268. Best score 51 bits
Score difference with first non-orthologous sequence - M.jannaschii:51 P.pallidum:1

Q58813              	100.00%		D3AYM5              	100.00%
Bootstrap support for Q58813 as seed ortholog is 100%.
Bootstrap support for D3AYM5 as seed ortholog is 49%.
Alternative seed ortholog is D3B2A6 (1 bits away from this cluster)

Group of orthologs #269. Best score 50 bits
Score difference with first non-orthologous sequence - M.jannaschii:50 P.pallidum:50

Q58999              	100.00%		D3B0L6              	100.00%
Bootstrap support for Q58999 as seed ortholog is 100%.
Bootstrap support for D3B0L6 as seed ortholog is 100%.

Group of orthologs #270. Best score 49 bits
Score difference with first non-orthologous sequence - M.jannaschii:49 P.pallidum:49

Q58914              	100.00%		D3B6C3              	100.00%
                    	       		D3BA25              	11.18%
                    	       		D3BCZ3              	6.73%
Bootstrap support for Q58914 as seed ortholog is 100%.
Bootstrap support for D3B6C3 as seed ortholog is 100%.

Group of orthologs #271. Best score 48 bits
Score difference with first non-orthologous sequence - M.jannaschii:48 P.pallidum:48

Q58288              	100.00%		D3B6B9              	100.00%
Q58282              	11.07%		
Q58059              	8.24%		
Bootstrap support for Q58288 as seed ortholog is 100%.
Bootstrap support for D3B6B9 as seed ortholog is 100%.

Group of orthologs #272. Best score 48 bits
Score difference with first non-orthologous sequence - M.jannaschii:48 P.pallidum:48

Q58298              	100.00%		D3BGK0              	100.00%
Q57744              	5.66%		
Bootstrap support for Q58298 as seed ortholog is 100%.
Bootstrap support for D3BGK0 as seed ortholog is 100%.

Group of orthologs #273. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pallidum:47

Q58035              	100.00%		D3AXK6              	100.00%
Bootstrap support for Q58035 as seed ortholog is 100%.
Bootstrap support for D3AXK6 as seed ortholog is 100%.

Group of orthologs #274. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pallidum:47

P54035              	100.00%		D3BAU6              	100.00%
Bootstrap support for P54035 as seed ortholog is 100%.
Bootstrap support for D3BAU6 as seed ortholog is 100%.

Group of orthologs #275. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pallidum:47

Q59069              	100.00%		D3BNI5              	100.00%
Bootstrap support for Q59069 as seed ortholog is 100%.
Bootstrap support for D3BNI5 as seed ortholog is 100%.

Group of orthologs #276. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

Q58735              	100.00%		D3BUX2              	100.00%
                    	       		D3BAT6              	38.25%
                    	       		D3BN54              	24.86%
                    	       		D3BP55              	24.32%
                    	       		D3AWN3              	24.04%
                    	       		D3BLV3              	23.77%
                    	       		D3BTQ5              	22.13%
                    	       		D3BU57              	21.86%
                    	       		D3BQV2              	21.86%
                    	       		D3BL86              	21.31%
                    	       		D3B3M6              	21.31%
                    	       		D3B0H3              	21.31%
                    	       		D3BGU2              	21.04%
                    	       		D3BTH1              	20.77%
                    	       		D3BBG2              	20.22%
                    	       		D3BAY1              	19.95%
                    	       		D3B2P9              	19.67%
                    	       		D3BUD9              	18.85%
                    	       		D3B840              	18.31%
                    	       		D3B6V8              	16.94%
                    	       		D3BMH1              	16.39%
                    	       		D3BPK6              	16.39%
                    	       		D3BH68              	16.12%
                    	       		D3B8J3              	15.30%
                    	       		D3BKA4              	15.30%
                    	       		D3BUL8              	15.30%
                    	       		D3BC33              	15.03%
                    	       		D3BK31              	15.03%
                    	       		D3BH94              	15.03%
                    	       		D3AW67              	14.48%
                    	       		D3BKB0              	14.48%
                    	       		D3B5I9              	14.21%
                    	       		D3BFS2              	14.21%
                    	       		D3B7P1              	13.93%
                    	       		D3BR97              	13.93%
                    	       		D3BSF4              	13.93%
                    	       		D3BIE8              	12.02%
                    	       		D3AZM0              	11.48%
                    	       		D3B576              	10.93%
                    	       		D3BEU9              	9.84%
                    	       		D3B4E3              	9.02%
                    	       		D3BBX9              	8.74%
                    	       		D3BQR0              	7.92%
                    	       		D3B7F5              	7.65%
                    	       		D3BTW7              	7.10%
                    	       		D3BKF3              	6.83%
                    	       		D3AW29              	6.01%
                    	       		D3B5M1              	5.74%
                    	       		D3B2K1              	5.19%
                    	       		D3BSR3              	5.19%
Bootstrap support for Q58735 as seed ortholog is 100%.
Bootstrap support for D3BUX2 as seed ortholog is 100%.

Group of orthologs #277. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

Q57726              	100.00%		D3B699              	100.00%
Q58235              	35.58%		D3B696              	45.09%
                    	       		D3AY15              	41.04%
                    	       		D3B9X0              	32.95%
                    	       		D3B6A0              	32.37%
                    	       		D3B698              	18.50%
                    	       		D3AZ41              	6.36%
Bootstrap support for Q57726 as seed ortholog is 100%.
Bootstrap support for D3B699 as seed ortholog is 100%.

Group of orthologs #278. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

Q57566              	100.00%		D3AYN0              	100.00%
Bootstrap support for Q57566 as seed ortholog is 100%.
Bootstrap support for D3AYN0 as seed ortholog is 100%.

Group of orthologs #279. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

P54110              	100.00%		D3B2B2              	100.00%
Bootstrap support for P54110 as seed ortholog is 100%.
Bootstrap support for D3B2B2 as seed ortholog is 100%.

Group of orthologs #280. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

Q58548              	100.00%		D3BKZ5              	100.00%
Bootstrap support for Q58548 as seed ortholog is 100%.
Bootstrap support for D3BKZ5 as seed ortholog is 100%.

Group of orthologs #281. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pallidum:45

P54028              	100.00%		D3BP72              	100.00%
Bootstrap support for P54028 as seed ortholog is 100%.
Bootstrap support for D3BP72 as seed ortholog is 100%.

Group of orthologs #282. Best score 44 bits
Score difference with first non-orthologous sequence - M.jannaschii:44 P.pallidum:44

P54055              	100.00%		D3B3Z7              	100.00%
Bootstrap support for P54055 as seed ortholog is 100%.
Bootstrap support for D3B3Z7 as seed ortholog is 100%.

Group of orthologs #283. Best score 44 bits
Score difference with first non-orthologous sequence - M.jannaschii:44 P.pallidum:44

Q59049              	100.00%		D3B538              	100.00%
Bootstrap support for Q59049 as seed ortholog is 100%.
Bootstrap support for D3B538 as seed ortholog is 100%.

Group of orthologs #284. Best score 43 bits
Score difference with first non-orthologous sequence - M.jannaschii:43 P.pallidum:43

Q57902              	100.00%		D3BUI8              	100.00%
Bootstrap support for Q57902 as seed ortholog is 100%.
Bootstrap support for D3BUI8 as seed ortholog is 100%.

Group of orthologs #285. Best score 42 bits
Score difference with first non-orthologous sequence - M.jannaschii:42 P.pallidum:42

Q58716              	100.00%		D3AXB8              	100.00%
Bootstrap support for Q58716 as seed ortholog is 100%.
Bootstrap support for D3AXB8 as seed ortholog is 100%.