###################################
195 groups of orthologs
201 in-paralogs from C.trachomatis
347 in-paralogs from S.scrofa
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 858 bits
Score difference with first non-orthologous sequence - C.trachomatis:858 S.scrofa:858

O84250              	100.00%		F1RQQ8              	100.00%
                    	       		F1SFF8              	65.29%
                    	       		F1RQQ7              	42.71%
Bootstrap support for O84250 as seed ortholog is 100%.
Bootstrap support for F1RQQ8 as seed ortholog is 100%.

Group of orthologs #2. Best score 854 bits
Score difference with first non-orthologous sequence - C.trachomatis:854 S.scrofa:607

O84022              	100.00%		F1SUF6              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for F1SUF6 as seed ortholog is 100%.

Group of orthologs #3. Best score 716 bits
Score difference with first non-orthologous sequence - C.trachomatis:716 S.scrofa:175

P17821              	100.00%		F1RGJ3              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for F1RGJ3 as seed ortholog is 99%.

Group of orthologs #4. Best score 711 bits
Score difference with first non-orthologous sequence - C.trachomatis:711 S.scrofa:711

O84348              	100.00%		F1SBU7              	100.00%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for F1SBU7 as seed ortholog is 100%.

Group of orthologs #5. Best score 618 bits
Score difference with first non-orthologous sequence - C.trachomatis:618 S.scrofa:618

O84716              	100.00%		C5I4T6              	100.00%
                    	       		A5GFS4              	45.10%
Bootstrap support for O84716 as seed ortholog is 100%.
Bootstrap support for C5I4T6 as seed ortholog is 100%.

Group of orthologs #6. Best score 589 bits
Score difference with first non-orthologous sequence - C.trachomatis:589 S.scrofa:453

O84067              	100.00%		F1S3T1              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for F1S3T1 as seed ortholog is 100%.

Group of orthologs #7. Best score 540 bits
Score difference with first non-orthologous sequence - C.trachomatis:351 S.scrofa:459

P0C0Z7              	100.00%		F1SMZ7              	100.00%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for F1SMZ7 as seed ortholog is 100%.

Group of orthologs #8. Best score 519 bits
Score difference with first non-orthologous sequence - C.trachomatis:519 S.scrofa:48

O84444              	100.00%		I3LKJ6              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for I3LKJ6 as seed ortholog is 81%.

Group of orthologs #9. Best score 511 bits
Score difference with first non-orthologous sequence - C.trachomatis:511 S.scrofa:511

O84057              	100.00%		F1SSH8              	100.00%
                    	       		F1SDW6              	68.35%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for F1SSH8 as seed ortholog is 100%.

Group of orthologs #10. Best score 477 bits
Score difference with first non-orthologous sequence - C.trachomatis:477 S.scrofa:477

O84863              	100.00%		P10173              	100.00%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for P10173 as seed ortholog is 100%.

Group of orthologs #11. Best score 467 bits
Score difference with first non-orthologous sequence - C.trachomatis:467 S.scrofa:467

O84585              	100.00%		F1SP18              	100.00%
                    	       		F1RZ96              	59.78%
                    	       		I3LDF6              	32.27%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for F1SP18 as seed ortholog is 100%.

Group of orthologs #12. Best score 454 bits
Score difference with first non-orthologous sequence - C.trachomatis:454 S.scrofa:306

O84304              	100.00%		Q767M3              	100.00%
                    	       		F1RU69              	99.42%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for Q767M3 as seed ortholog is 100%.

Group of orthologs #13. Best score 450 bits
Score difference with first non-orthologous sequence - C.trachomatis:450 S.scrofa:450

P0CD73              	100.00%		I3L655              	100.00%
Bootstrap support for P0CD73 as seed ortholog is 100%.
Bootstrap support for I3L655 as seed ortholog is 100%.

Group of orthologs #14. Best score 449 bits
Score difference with first non-orthologous sequence - C.trachomatis:449 S.scrofa:293

P0CD71              	100.00%		F1RFI1              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for F1RFI1 as seed ortholog is 100%.

Group of orthologs #15. Best score 422 bits
Score difference with first non-orthologous sequence - C.trachomatis:422 S.scrofa:224

O84848              	100.00%		I3LLQ8              	100.00%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for I3LLQ8 as seed ortholog is 100%.

Group of orthologs #16. Best score 421 bits
Score difference with first non-orthologous sequence - C.trachomatis:421 S.scrofa:421

O84754              	100.00%		F1S431              	100.00%
                    	       		F1RQT7              	21.87%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for F1S431 as seed ortholog is 100%.

Group of orthologs #17. Best score 420 bits
Score difference with first non-orthologous sequence - C.trachomatis:420 S.scrofa:420

Q59321              	100.00%		F1SF78              	100.00%
                    	       		F1SQS3              	31.46%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for F1SF78 as seed ortholog is 100%.

Group of orthologs #18. Best score 400 bits
Score difference with first non-orthologous sequence - C.trachomatis:400 S.scrofa:400

O84834              	100.00%		F1SUZ5              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for F1SUZ5 as seed ortholog is 100%.

Group of orthologs #19. Best score 385 bits
Score difference with first non-orthologous sequence - C.trachomatis:385 S.scrofa:385

O84310              	100.00%		Q29048              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for Q29048 as seed ortholog is 100%.

Group of orthologs #20. Best score 379 bits
Score difference with first non-orthologous sequence - C.trachomatis:379 S.scrofa:218

O84098              	100.00%		F1SQK6              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for F1SQK6 as seed ortholog is 100%.

Group of orthologs #21. Best score 374 bits
Score difference with first non-orthologous sequence - C.trachomatis:374 S.scrofa:224

O84546              	100.00%		F1S742              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for F1S742 as seed ortholog is 100%.

Group of orthologs #22. Best score 364 bits
Score difference with first non-orthologous sequence - C.trachomatis:364 S.scrofa:270

O84591              	100.00%		Q1KYT0              	100.00%
                    	       		I3LCN1              	70.20%
                    	       		I3LK59              	25.80%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for Q1KYT0 as seed ortholog is 100%.

Group of orthologs #23. Best score 361 bits
Score difference with first non-orthologous sequence - C.trachomatis:361 S.scrofa:51

O84126              	100.00%		I3LT90              	100.00%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for I3LT90 as seed ortholog is 93%.

Group of orthologs #24. Best score 354 bits
Score difference with first non-orthologous sequence - C.trachomatis:354 S.scrofa:236

P0CE13              	100.00%		P00355              	100.00%
                    	       		F1RM74              	16.30%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for P00355 as seed ortholog is 100%.

Group of orthologs #25. Best score 337 bits
Score difference with first non-orthologous sequence - C.trachomatis:337 S.scrofa:337

O84829              	100.00%		O19069              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for O19069 as seed ortholog is 100%.

Group of orthologs #26. Best score 327 bits
Score difference with first non-orthologous sequence - C.trachomatis:327 S.scrofa:327

O84006              	100.00%		F1RT46              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for F1RT46 as seed ortholog is 100%.

Group of orthologs #27. Best score 320 bits
Score difference with first non-orthologous sequence - C.trachomatis:320 S.scrofa:174

O84248              	100.00%		F1SGH5              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for F1SGH5 as seed ortholog is 100%.

Group of orthologs #28. Best score 319 bits
Score difference with first non-orthologous sequence - C.trachomatis:319 S.scrofa:249

O84786              	100.00%		F1S458              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for F1S458 as seed ortholog is 100%.

Group of orthologs #29. Best score 313 bits
Score difference with first non-orthologous sequence - C.trachomatis:313 S.scrofa:148

O84561              	100.00%		P09623              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for P09623 as seed ortholog is 99%.

Group of orthologs #30. Best score 310 bits
Score difference with first non-orthologous sequence - C.trachomatis:310 S.scrofa:310

P0CE09              	100.00%		I3LGP4              	100.00%
                    	       		F1SPQ0              	11.48%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for I3LGP4 as seed ortholog is 100%.

Group of orthologs #31. Best score 305 bits
Score difference with first non-orthologous sequence - C.trachomatis:305 S.scrofa:305

P0CD78              	100.00%		Q6RI85              	100.00%
                    	       		Q7SIB7              	82.73%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for Q6RI85 as seed ortholog is 100%.

Group of orthologs #32. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 S.scrofa:209

O84211              	100.00%		F1SNZ5              	100.00%
Bootstrap support for O84211 as seed ortholog is 100%.
Bootstrap support for F1SNZ5 as seed ortholog is 99%.

Group of orthologs #33. Best score 300 bits
Score difference with first non-orthologous sequence - C.trachomatis:300 S.scrofa:300

O84823              	100.00%		F1S5Q1              	100.00%
                    	       		F1SPM6              	71.48%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for F1S5Q1 as seed ortholog is 100%.

Group of orthologs #34. Best score 299 bits
Score difference with first non-orthologous sequence - C.trachomatis:299 S.scrofa:299

P0CE21              	100.00%		F1SHL9              	100.00%
                    	       		I3LAK4              	44.75%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for F1SHL9 as seed ortholog is 100%.

Group of orthologs #35. Best score 291 bits
Score difference with first non-orthologous sequence - C.trachomatis:291 S.scrofa:291

O84711              	100.00%		F1SJL5              	100.00%
Bootstrap support for O84711 as seed ortholog is 100%.
Bootstrap support for F1SJL5 as seed ortholog is 100%.

Group of orthologs #36. Best score 284 bits
Score difference with first non-orthologous sequence - C.trachomatis:284 S.scrofa:284

O84035              	100.00%		I3LCC2              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for I3LCC2 as seed ortholog is 100%.

Group of orthologs #37. Best score 283 bits
Score difference with first non-orthologous sequence - C.trachomatis:283 S.scrofa:283

O84831              	100.00%		F1RX50              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for F1RX50 as seed ortholog is 100%.

Group of orthologs #38. Best score 281 bits
Score difference with first non-orthologous sequence - C.trachomatis:281 S.scrofa:281

O84451              	100.00%		F1SAB4              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for F1SAB4 as seed ortholog is 100%.

Group of orthologs #39. Best score 279 bits
Score difference with first non-orthologous sequence - C.trachomatis:279 S.scrofa:233

O84828              	100.00%		O97580              	100.00%
                    	       		P53590              	25.09%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for O97580 as seed ortholog is 100%.

Group of orthologs #40. Best score 277 bits
Score difference with first non-orthologous sequence - C.trachomatis:112 S.scrofa:158

O84249              	100.00%		F1SMB2              	100.00%
Bootstrap support for O84249 as seed ortholog is 99%.
Bootstrap support for F1SMB2 as seed ortholog is 99%.

Group of orthologs #41. Best score 277 bits
Score difference with first non-orthologous sequence - C.trachomatis:277 S.scrofa:277

O84698              	100.00%		I3L7K6              	100.00%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for I3L7K6 as seed ortholog is 100%.

Group of orthologs #42. Best score 275 bits
Score difference with first non-orthologous sequence - C.trachomatis:275 S.scrofa:275

O84188              	100.00%		I3L677              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for I3L677 as seed ortholog is 100%.

Group of orthologs #43. Best score 272 bits
Score difference with first non-orthologous sequence - C.trachomatis:272 S.scrofa:272

O84316              	100.00%		F1S2E6              	100.00%
                    	       		I3LJR4              	11.75%
                    	       		F1SVC3              	10.16%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for F1S2E6 as seed ortholog is 100%.

Group of orthologs #44. Best score 262 bits
Score difference with first non-orthologous sequence - C.trachomatis:262 S.scrofa:262

P36431              	100.00%		F1S781              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for F1S781 as seed ortholog is 100%.

Group of orthologs #45. Best score 257 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 S.scrofa:257

O84026              	100.00%		F1S7X5              	100.00%
                    	       		F1RJ87              	13.65%
Bootstrap support for O84026 as seed ortholog is 98%.
Bootstrap support for F1S7X5 as seed ortholog is 100%.

Group of orthologs #46. Best score 257 bits
Score difference with first non-orthologous sequence - C.trachomatis:257 S.scrofa:257

P0CD72              	100.00%		P08059              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for P08059 as seed ortholog is 100%.

Group of orthologs #47. Best score 253 bits
Score difference with first non-orthologous sequence - C.trachomatis:253 S.scrofa:181

O84381              	100.00%		P11708              	100.00%
                    	       		I3LBY9              	69.14%
                    	       		I3LSS1              	22.22%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for P11708 as seed ortholog is 100%.

Group of orthologs #48. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 S.scrofa:251

O84642              	100.00%		P00506              	100.00%
                    	       		P00503              	20.67%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for P00506 as seed ortholog is 100%.

Group of orthologs #49. Best score 249 bits
Score difference with first non-orthologous sequence - C.trachomatis:249 S.scrofa:249

O84439              	100.00%		F1SL74              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for F1SL74 as seed ortholog is 100%.

Group of orthologs #50. Best score 248 bits
Score difference with first non-orthologous sequence - C.trachomatis:248 S.scrofa:248

O84309              	100.00%		F1RMZ8              	100.00%
                    	       		F1SLE5              	73.66%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for F1RMZ8 as seed ortholog is 100%.

Group of orthologs #51. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 S.scrofa:3

O84797              	100.00%		I3LHZ9              	100.00%
                    	       		I3LUG7              	71.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for I3LHZ9 as seed ortholog is 56%.
Alternative seed ortholog is F1S9R2 (3 bits away from this cluster)

Group of orthologs #52. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 S.scrofa:128

O84548              	100.00%		I3LVB7              	100.00%
Bootstrap support for O84548 as seed ortholog is 100%.
Bootstrap support for I3LVB7 as seed ortholog is 99%.

Group of orthologs #53. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 S.scrofa:119

O84058              	100.00%		Q9N0F1              	100.00%
Bootstrap support for O84058 as seed ortholog is 99%.
Bootstrap support for Q9N0F1 as seed ortholog is 99%.

Group of orthologs #54. Best score 243 bits
Score difference with first non-orthologous sequence - C.trachomatis:243 S.scrofa:243

O84360              	100.00%		F1RT97              	100.00%
Bootstrap support for O84360 as seed ortholog is 100%.
Bootstrap support for F1RT97 as seed ortholog is 100%.

Group of orthologs #55. Best score 242 bits
Score difference with first non-orthologous sequence - C.trachomatis:242 S.scrofa:146

O84352              	100.00%		Q767L0              	100.00%
                    	       		F1RU94              	80.66%
                    	       		I3LB03              	14.45%
                    	       		F1SSL4              	11.68%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for Q767L0 as seed ortholog is 99%.

Group of orthologs #56. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 S.scrofa:240

O84787              	100.00%		F1RYA3              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for F1RYA3 as seed ortholog is 100%.

Group of orthologs #57. Best score 236 bits
Score difference with first non-orthologous sequence - C.trachomatis:236 S.scrofa:236

O84297              	100.00%		F1SUR3              	100.00%
                    	       		F1S4K7              	50.40%
                    	       		I3L759              	25.66%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for F1SUR3 as seed ortholog is 100%.

Group of orthologs #58. Best score 231 bits
Score difference with first non-orthologous sequence - C.trachomatis:231 S.scrofa:231

O84775              	100.00%		F1RS43              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for F1RS43 as seed ortholog is 100%.

Group of orthologs #59. Best score 229 bits
Score difference with first non-orthologous sequence - C.trachomatis:229 S.scrofa:229

O84289              	100.00%		F1SM74              	100.00%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for F1SM74 as seed ortholog is 100%.

Group of orthologs #60. Best score 228 bits
Score difference with first non-orthologous sequence - C.trachomatis:228 S.scrofa:37

O84345              	100.00%		I3LLG4              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for I3LLG4 as seed ortholog is 87%.

Group of orthologs #61. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:127 S.scrofa:225

O84406              	100.00%		F1SHF9              	100.00%
                    	       		F1SNA0              	29.63%
                    	       		F1SK41              	28.30%
                    	       		F1SAN3              	27.52%
                    	       		F1S763              	22.86%
                    	       		F1RM08              	16.43%
Bootstrap support for O84406 as seed ortholog is 99%.
Bootstrap support for F1SHF9 as seed ortholog is 100%.

Group of orthologs #62. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:225 S.scrofa:225

O84562              	100.00%		I3LGA8              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for I3LGA8 as seed ortholog is 100%.

Group of orthologs #63. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 S.scrofa:223

O84028              	100.00%		F2Z5M9              	100.00%
Bootstrap support for O84028 as seed ortholog is 99%.
Bootstrap support for F2Z5M9 as seed ortholog is 100%.

Group of orthologs #64. Best score 216 bits
Score difference with first non-orthologous sequence - C.trachomatis:216 S.scrofa:216

O84613              	100.00%		F1RGB4              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for F1RGB4 as seed ortholog is 100%.

Group of orthologs #65. Best score 210 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 S.scrofa:210

O84712              	100.00%		F1SBT2              	100.00%
Bootstrap support for O84712 as seed ortholog is 99%.
Bootstrap support for F1SBT2 as seed ortholog is 100%.

Group of orthologs #66. Best score 208 bits
Score difference with first non-orthologous sequence - C.trachomatis:208 S.scrofa:12

O84266              	100.00%		I3LED8              	100.00%
                    	       		A5D9J7              	19.57%
                    	       		A5D9J3              	18.57%
                    	       		F1RG41              	14.20%
                    	       		I3LMV8              	11.13%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for I3LED8 as seed ortholog is 61%.
Alternative seed ortholog is F1SBZ0 (12 bits away from this cluster)

Group of orthologs #67. Best score 206 bits
Score difference with first non-orthologous sequence - C.trachomatis:206 S.scrofa:206

O84812              	100.00%		F1SC98              	100.00%
                    	       		F1S6G2              	18.77%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for F1SC98 as seed ortholog is 100%.

Group of orthologs #68. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 S.scrofa:7

O84460              	100.00%		F1RR89              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for F1RR89 as seed ortholog is 56%.
Alternative seed ortholog is F1S0G2 (7 bits away from this cluster)

Group of orthologs #69. Best score 198 bits
Score difference with first non-orthologous sequence - C.trachomatis:198 S.scrofa:198

O84596              	100.00%		Q0QF01              	100.00%
                    	       		I3LS54              	80.52%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for Q0QF01 as seed ortholog is 100%.

Group of orthologs #70. Best score 192 bits
Score difference with first non-orthologous sequence - C.trachomatis:192 S.scrofa:192

O84196              	100.00%		F1S586              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for F1S586 as seed ortholog is 100%.

Group of orthologs #71. Best score 191 bits
Score difference with first non-orthologous sequence - C.trachomatis:132 S.scrofa:191

O84859              	100.00%		F1S0C0              	100.00%
                    	       		F1S085              	7.37%
Bootstrap support for O84859 as seed ortholog is 99%.
Bootstrap support for F1S0C0 as seed ortholog is 100%.

Group of orthologs #72. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 S.scrofa:190

O84007              	100.00%		F1RSA4              	100.00%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for F1RSA4 as seed ortholog is 100%.

Group of orthologs #73. Best score 189 bits
Score difference with first non-orthologous sequence - C.trachomatis:189 S.scrofa:189

O84402              	100.00%		F1RHF7              	100.00%
                    	       		I3LEH1              	18.74%
Bootstrap support for O84402 as seed ortholog is 100%.
Bootstrap support for F1RHF7 as seed ortholog is 100%.

Group of orthologs #74. Best score 188 bits
Score difference with first non-orthologous sequence - C.trachomatis:188 S.scrofa:188

O84423              	100.00%		F1S322              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for F1S322 as seed ortholog is 100%.

Group of orthologs #75. Best score 181 bits
Score difference with first non-orthologous sequence - C.trachomatis:181 S.scrofa:70

O84247              	100.00%		P29804              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for P29804 as seed ortholog is 98%.

Group of orthologs #76. Best score 180 bits
Score difference with first non-orthologous sequence - C.trachomatis:180 S.scrofa:18

P38004              	100.00%		F1RIX8              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for F1RIX8 as seed ortholog is 72%.
Alternative seed ortholog is Q9XT00 (18 bits away from this cluster)

Group of orthologs #77. Best score 179 bits
Score difference with first non-orthologous sequence - C.trachomatis:179 S.scrofa:59

O84608              	100.00%		F1SQ01              	100.00%
                    	       		F1S418              	25.13%
                    	       		F1S3U9              	23.82%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for F1SQ01 as seed ortholog is 99%.

Group of orthologs #78. Best score 178 bits
Score difference with first non-orthologous sequence - C.trachomatis:178 S.scrofa:178

P18584              	100.00%		F1SEH4              	100.00%
                    	       		F1S7Y0              	35.44%
                    	       		I3L7K4              	33.03%
                    	       		F1RZL2              	21.40%
                    	       		I3LLY6              	13.46%
Bootstrap support for P18584 as seed ortholog is 100%.
Bootstrap support for F1SEH4 as seed ortholog is 100%.

Group of orthologs #79. Best score 178 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 S.scrofa:178

O84755              	100.00%		A8U4R4              	100.00%
                    	       		I3LCX0              	54.93%
                    	       		I3L954              	53.62%
Bootstrap support for O84755 as seed ortholog is 86%.
Bootstrap support for A8U4R4 as seed ortholog is 100%.

Group of orthologs #80. Best score 175 bits
Score difference with first non-orthologous sequence - C.trachomatis:175 S.scrofa:175

O84234              	100.00%		F1SFY9              	100.00%
                    	       		I3LKJ8              	32.79%
                    	       		F1RL70              	32.54%
                    	       		F1SQA4              	29.56%
                    	       		F1RF13              	27.00%
                    	       		I3LR93              	26.66%
                    	       		F1SK80              	26.15%
                    	       		F1RN70              	25.04%
                    	       		I3L6B0              	23.85%
                    	       		F1S024              	22.23%
                    	       		F1SPI3              	22.15%
                    	       		F1S025              	18.82%
                    	       		F1S028              	17.04%
                    	       		F1S2B0              	15.50%
                    	       		I3LUD9              	10.48%
                    	       		F1S617              	10.05%
                    	       		I3L6B4              	8.26%
Bootstrap support for O84234 as seed ortholog is 100%.
Bootstrap support for F1SFY9 as seed ortholog is 100%.

Group of orthologs #81. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 S.scrofa:61

O84734              	100.00%		F1S5Z3              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for F1S5Z3 as seed ortholog is 94%.

Group of orthologs #82. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 S.scrofa:171

O84065              	100.00%		I3L635              	100.00%
Bootstrap support for O84065 as seed ortholog is 100%.
Bootstrap support for I3L635 as seed ortholog is 100%.

Group of orthologs #83. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 S.scrofa:170

O84676              	100.00%		F1SLA0              	100.00%
O84722              	11.57%		
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for F1SLA0 as seed ortholog is 100%.

Group of orthologs #84. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 S.scrofa:170

O84332              	100.00%		Q29371              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for Q29371 as seed ortholog is 100%.

Group of orthologs #85. Best score 165 bits
Score difference with first non-orthologous sequence - C.trachomatis:165 S.scrofa:165

O84274              	100.00%		F1SGM8              	100.00%
Bootstrap support for O84274 as seed ortholog is 100%.
Bootstrap support for F1SGM8 as seed ortholog is 100%.

Group of orthologs #86. Best score 164 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 S.scrofa:164

O84055              	100.00%		F1RT95              	100.00%
Bootstrap support for O84055 as seed ortholog is 99%.
Bootstrap support for F1RT95 as seed ortholog is 100%.

Group of orthologs #87. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 S.scrofa:59

O84200              	100.00%		F1RXU6              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for F1RXU6 as seed ortholog is 92%.

Group of orthologs #88. Best score 155 bits
Score difference with first non-orthologous sequence - C.trachomatis:155 S.scrofa:155

O84720              	100.00%		F1S210              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for F1S210 as seed ortholog is 100%.

Group of orthologs #89. Best score 155 bits
Score difference with first non-orthologous sequence - C.trachomatis:155 S.scrofa:155

O84296              	100.00%		P28768              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for P28768 as seed ortholog is 100%.

Group of orthologs #90. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:37 S.scrofa:151

O84260              	100.00%		B6UV57              	100.00%
                    	       		F1SJI1              	7.02%
Bootstrap support for O84260 as seed ortholog is 83%.
Bootstrap support for B6UV57 as seed ortholog is 100%.

Group of orthologs #91. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 S.scrofa:151

O84081              	100.00%		F1SLH0              	100.00%
                    	       		F1RYX0              	38.03%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for F1SLH0 as seed ortholog is 100%.

Group of orthologs #92. Best score 149 bits
Score difference with first non-orthologous sequence - C.trachomatis:149 S.scrofa:149

O84632              	100.00%		F1SSH1              	100.00%
Bootstrap support for O84632 as seed ortholog is 100%.
Bootstrap support for F1SSH1 as seed ortholog is 100%.

Group of orthologs #93. Best score 148 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 S.scrofa:148

O84727              	100.00%		B5KJG2              	100.00%
                    	       		F1S8Y5              	100.00%
Bootstrap support for O84727 as seed ortholog is 100%.
Bootstrap support for B5KJG2 as seed ortholog is 100%.
Bootstrap support for F1S8Y5 as seed ortholog is 100%.

Group of orthologs #94. Best score 142 bits
Score difference with first non-orthologous sequence - C.trachomatis:142 S.scrofa:142

O84049              	100.00%		A5GFT5              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for A5GFT5 as seed ortholog is 100%.

Group of orthologs #95. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 S.scrofa:141

O84752              	100.00%		F1S365              	100.00%
Bootstrap support for O84752 as seed ortholog is 100%.
Bootstrap support for F1S365 as seed ortholog is 100%.

Group of orthologs #96. Best score 135 bits
Score difference with first non-orthologous sequence - C.trachomatis:135 S.scrofa:135

O84732              	100.00%		I3LN55              	100.00%
                    	       		F1RGF9              	59.64%
                    	       		P05024              	59.20%
                    	       		P19156              	58.80%
                    	       		D2WKD8              	58.56%
                    	       		I3L8L8              	55.49%
                    	       		I3LT88              	42.88%
                    	       		I3L580              	23.89%
                    	       		P11607              	10.29%
                    	       		F1RFH9              	10.19%
                    	       		F1S5U9              	10.19%
                    	       		F1RSA2              	10.09%
                    	       		P23220              	8.51%
                    	       		F1S2B3              	8.21%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for I3LN55 as seed ortholog is 100%.

Group of orthologs #97. Best score 135 bits
Score difference with first non-orthologous sequence - C.trachomatis:135 S.scrofa:135

O84835              	100.00%		F1S0R3              	100.00%
                    	       		I3LUY0              	74.08%
                    	       		I3LV77              	62.35%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for F1S0R3 as seed ortholog is 100%.

Group of orthologs #98. Best score 134 bits
Score difference with first non-orthologous sequence - C.trachomatis:134 S.scrofa:134

O84492              	100.00%		F1S1X4              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for F1S1X4 as seed ortholog is 100%.

Group of orthologs #99. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 S.scrofa:38

O84530              	100.00%		F1RRN2              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for F1RRN2 as seed ortholog is 90%.

Group of orthologs #100. Best score 127 bits
Score difference with first non-orthologous sequence - C.trachomatis:127 S.scrofa:127

O84864              	100.00%		F1RZ81              	100.00%
                    	       		F1SKK6              	7.18%
                    	       		F1SB52              	5.01%
Bootstrap support for O84864 as seed ortholog is 100%.
Bootstrap support for F1RZ81 as seed ortholog is 100%.

Group of orthologs #101. Best score 125 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 S.scrofa:125

O84391              	100.00%		F1SFR1              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for F1SFR1 as seed ortholog is 100%.

Group of orthologs #102. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 S.scrofa:123

O84241              	100.00%		F1SJS0              	100.00%
Bootstrap support for O84241 as seed ortholog is 100%.
Bootstrap support for F1SJS0 as seed ortholog is 100%.

Group of orthologs #103. Best score 121 bits
Score difference with first non-orthologous sequence - C.trachomatis:121 S.scrofa:30

O84130              	100.00%		F1SK45              	100.00%
                    	       		I3LSI3              	10.42%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for F1SK45 as seed ortholog is 83%.

Group of orthologs #104. Best score 120 bits
Score difference with first non-orthologous sequence - C.trachomatis:120 S.scrofa:51

O84033              	100.00%		F1S5R9              	100.00%
                    	       		P31006              	100.00%
                    	       		F1RPM4              	15.19%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for F1S5R9 as seed ortholog is 97%.
Bootstrap support for P31006 as seed ortholog is 97%.

Group of orthologs #105. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 S.scrofa:119

O84123              	100.00%		F1SSS5              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for F1SSS5 as seed ortholog is 100%.

Group of orthologs #106. Best score 115 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 S.scrofa:6

O84508              	100.00%		F1RG17              	100.00%
                    	       		Q2EN76              	46.52%
                    	       		F6PVJ7              	44.35%
                    	       		F1RGV5              	36.52%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for F1RG17 as seed ortholog is 61%.
Alternative seed ortholog is F1RPV8 (6 bits away from this cluster)

Group of orthologs #107. Best score 114 bits
Score difference with first non-orthologous sequence - C.trachomatis:114 S.scrofa:114

O84478              	100.00%		F1S7W2              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for F1S7W2 as seed ortholog is 100%.

Group of orthologs #108. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 S.scrofa:111

O84710              	100.00%		F1SFL7              	100.00%
O84415              	6.58%		
Bootstrap support for O84710 as seed ortholog is 100%.
Bootstrap support for F1SFL7 as seed ortholog is 100%.

Group of orthologs #109. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 S.scrofa:111

O84463              	100.00%		F1RRW7              	100.00%
Bootstrap support for O84463 as seed ortholog is 100%.
Bootstrap support for F1RRW7 as seed ortholog is 100%.

Group of orthologs #110. Best score 108 bits
Score difference with first non-orthologous sequence - C.trachomatis:108 S.scrofa:41

O84358              	100.00%		I3LLW6              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for I3LLW6 as seed ortholog is 90%.

Group of orthologs #111. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 S.scrofa:34

O84599              	100.00%		F1S2W4              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for F1S2W4 as seed ortholog is 84%.

Group of orthologs #112. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 S.scrofa:105

O84215              	100.00%		A2TLM1              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for A2TLM1 as seed ortholog is 100%.

Group of orthologs #113. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 S.scrofa:58

O84456              	100.00%		F1STT4              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for F1STT4 as seed ortholog is 99%.

Group of orthologs #114. Best score 104 bits
Score difference with first non-orthologous sequence - C.trachomatis:104 S.scrofa:41

O84096              	100.00%		F1S4U4              	100.00%
Bootstrap support for O84096 as seed ortholog is 100%.
Bootstrap support for F1S4U4 as seed ortholog is 91%.

Group of orthologs #115. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 S.scrofa:33

O84212              	100.00%		F1SDP3              	100.00%
                    	       		F1SND2              	6.51%
Bootstrap support for O84212 as seed ortholog is 100%.
Bootstrap support for F1SDP3 as seed ortholog is 79%.

Group of orthologs #116. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 S.scrofa:102

O84851              	100.00%		F1S713              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for F1S713 as seed ortholog is 100%.

Group of orthologs #117. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:34 S.scrofa:49

O84660              	100.00%		I3L9I3              	100.00%
                    	       		I3LKH9              	56.91%
                    	       		I3LFM3              	7.37%
Bootstrap support for O84660 as seed ortholog is 88%.
Bootstrap support for I3L9I3 as seed ortholog is 96%.

Group of orthologs #118. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 S.scrofa:55

P0CE06              	100.00%		F1RVX4              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for F1RVX4 as seed ortholog is 97%.

Group of orthologs #119. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 S.scrofa:99

O84806              	100.00%		F1RS13              	100.00%
Bootstrap support for O84806 as seed ortholog is 100%.
Bootstrap support for F1RS13 as seed ortholog is 100%.

Group of orthologs #120. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 S.scrofa:99

O84301              	100.00%		F6Q2D2              	100.00%
Bootstrap support for O84301 as seed ortholog is 100%.
Bootstrap support for F6Q2D2 as seed ortholog is 100%.

Group of orthologs #121. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 S.scrofa:27

O84469              	100.00%		F1RJE9              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for F1RJE9 as seed ortholog is 75%.

Group of orthologs #122. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 S.scrofa:98

P0CE03              	100.00%		F1SRT1              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for F1SRT1 as seed ortholog is 100%.

Group of orthologs #123. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 S.scrofa:97

O84390              	100.00%		F1STB2              	100.00%
                    	       		F1RKI3              	30.87%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for F1STB2 as seed ortholog is 100%.

Group of orthologs #124. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 S.scrofa:97

O84350              	100.00%		I3LGH2              	100.00%
Bootstrap support for O84350 as seed ortholog is 100%.
Bootstrap support for I3LGH2 as seed ortholog is 100%.

Group of orthologs #125. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 S.scrofa:96

O84719              	100.00%		I3LLU0              	100.00%
                    	       		F1SHA2              	45.29%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for I3LLU0 as seed ortholog is 100%.

Group of orthologs #126. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 S.scrofa:95

P0CD79              	100.00%		F1RLV4              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for F1RLV4 as seed ortholog is 100%.

Group of orthologs #127. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 S.scrofa:94

O84649              	100.00%		F1RL05              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for F1RL05 as seed ortholog is 100%.

Group of orthologs #128. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 S.scrofa:93

O84782              	100.00%		F1SKL8              	100.00%
                    	       		F1RUD4              	18.22%
                    	       		F1SIX5              	16.46%
                    	       		F1SBJ7              	10.93%
                    	       		F1SE08              	10.93%
                    	       		F1RN05              	6.75%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for F1SKL8 as seed ortholog is 100%.

Group of orthologs #129. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 S.scrofa:91

O84687              	100.00%		F1S001              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for F1S001 as seed ortholog is 100%.

Group of orthologs #130. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 S.scrofa:91

O84771              	100.00%		F1SMC5              	100.00%
Bootstrap support for O84771 as seed ortholog is 100%.
Bootstrap support for F1SMC5 as seed ortholog is 100%.

Group of orthologs #131. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 S.scrofa:89

O84435              	100.00%		F1RJK0              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for F1RJK0 as seed ortholog is 100%.

Group of orthologs #132. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 S.scrofa:89

O84321              	100.00%		F1RU54              	100.00%
Bootstrap support for O84321 as seed ortholog is 100%.
Bootstrap support for F1RU54 as seed ortholog is 100%.

Group of orthologs #133. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 S.scrofa:88

O84750              	100.00%		F1S197              	100.00%
Bootstrap support for O84750 as seed ortholog is 100%.
Bootstrap support for F1S197 as seed ortholog is 100%.

Group of orthologs #134. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 S.scrofa:87

O84535              	100.00%		I3LFR9              	100.00%
Bootstrap support for O84535 as seed ortholog is 100%.
Bootstrap support for I3LFR9 as seed ortholog is 100%.

Group of orthologs #135. Best score 85 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 S.scrofa:85

O84595              	100.00%		Q007T0              	100.00%
Bootstrap support for O84595 as seed ortholog is 100%.
Bootstrap support for Q007T0 as seed ortholog is 100%.

Group of orthologs #136. Best score 83 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 S.scrofa:83

O84189              	100.00%		F1S956              	100.00%
Bootstrap support for O84189 as seed ortholog is 100%.
Bootstrap support for F1S956 as seed ortholog is 100%.

Group of orthologs #137. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 S.scrofa:81

O84499              	100.00%		F1RR05              	100.00%
Bootstrap support for O84499 as seed ortholog is 100%.
Bootstrap support for F1RR05 as seed ortholog is 100%.

Group of orthologs #138. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 S.scrofa:79

P55137              	100.00%		F1S1L6              	100.00%
                    	       		F1RHM9              	21.27%
Bootstrap support for P55137 as seed ortholog is 100%.
Bootstrap support for F1S1L6 as seed ortholog is 100%.

Group of orthologs #139. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 S.scrofa:79

O84468              	100.00%		F1SEJ2              	100.00%
                    	       		I3L7G5              	41.58%
Bootstrap support for O84468 as seed ortholog is 100%.
Bootstrap support for F1SEJ2 as seed ortholog is 100%.

Group of orthologs #140. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 S.scrofa:79

O84533              	100.00%		F1RX24              	100.00%
Bootstrap support for O84533 as seed ortholog is 100%.
Bootstrap support for F1RX24 as seed ortholog is 100%.

Group of orthologs #141. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 S.scrofa:78

O84547              	100.00%		F1RGD9              	100.00%
                    	       		F1RGD8              	71.81%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for F1RGD9 as seed ortholog is 100%.

Group of orthologs #142. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 S.scrofa:78

O84684              	100.00%		F1SLQ7              	100.00%
Bootstrap support for O84684 as seed ortholog is 100%.
Bootstrap support for F1SLQ7 as seed ortholog is 100%.

Group of orthologs #143. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 S.scrofa:76

O84338              	100.00%		F1SFI3              	100.00%
                    	       		F1RKG3              	22.88%
                    	       		I3LHX6              	15.52%
                    	       		F1RSR4              	5.64%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for F1SFI3 as seed ortholog is 100%.

Group of orthologs #144. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 S.scrofa:76

O84108              	100.00%		F1RG52              	100.00%
Bootstrap support for O84108 as seed ortholog is 100%.
Bootstrap support for F1RG52 as seed ortholog is 100%.

Group of orthologs #145. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 S.scrofa:76

O84357              	100.00%		F1S391              	100.00%
Bootstrap support for O84357 as seed ortholog is 100%.
Bootstrap support for F1S391 as seed ortholog is 100%.

Group of orthologs #146. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 S.scrofa:76

O84792              	100.00%		F1S721              	100.00%
Bootstrap support for O84792 as seed ortholog is 100%.
Bootstrap support for F1S721 as seed ortholog is 100%.

Group of orthologs #147. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 S.scrofa:12

O84544              	100.00%		F1SKJ2              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for F1SKJ2 as seed ortholog is 74%.
Alternative seed ortholog is P82460 (12 bits away from this cluster)

Group of orthologs #148. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 S.scrofa:75

O84703              	100.00%		F1RFB3              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for F1RFB3 as seed ortholog is 100%.

Group of orthologs #149. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 S.scrofa:74

O84665              	100.00%		F1S6H1              	100.00%
                    	       		F1SQE3              	6.39%
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for F1S6H1 as seed ortholog is 100%.

Group of orthologs #150. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 S.scrofa:31

O84366              	100.00%		F1S8X9              	100.00%
Bootstrap support for O84366 as seed ortholog is 100%.
Bootstrap support for F1S8X9 as seed ortholog is 84%.

Group of orthologs #151. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:15 S.scrofa:17

O84154              	100.00%		F1RRK7              	100.00%
O84132              	5.46%		I3L955              	33.83%
                    	       		F1RP53              	10.15%
Bootstrap support for O84154 as seed ortholog is 69%.
Alternative seed ortholog is O84695 (15 bits away from this cluster)
Bootstrap support for F1RRK7 as seed ortholog is 77%.

Group of orthologs #152. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 S.scrofa:72

P36424              	100.00%		I3LVG4              	100.00%
                    	       		I3LDV8              	46.37%
                    	       		F1RL94              	25.98%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for I3LVG4 as seed ortholog is 100%.

Group of orthologs #153. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 S.scrofa:72

O84027              	100.00%		I3LL60              	100.00%
Bootstrap support for O84027 as seed ortholog is 100%.
Bootstrap support for I3LL60 as seed ortholog is 100%.

Group of orthologs #154. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 S.scrofa:69

O84842              	100.00%		F1RJD0              	100.00%
Bootstrap support for O84842 as seed ortholog is 100%.
Bootstrap support for F1RJD0 as seed ortholog is 100%.

Group of orthologs #155. Best score 68 bits
Score difference with first non-orthologous sequence - C.trachomatis:68 S.scrofa:18

P0CD81              	100.00%		P62831              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for P62831 as seed ortholog is 76%.

Group of orthologs #156. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 S.scrofa:67

O84210              	100.00%		I3LFQ5              	100.00%
O84208              	28.50%		Q2HYU2              	64.86%
                    	       		I3LK68              	36.82%
Bootstrap support for O84210 as seed ortholog is 100%.
Bootstrap support for I3LFQ5 as seed ortholog is 100%.

Group of orthologs #157. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 S.scrofa:67

O84127              	100.00%		F1S286              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for F1S286 as seed ortholog is 100%.

Group of orthologs #158. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 S.scrofa:66

O84614              	100.00%		I3L8M1              	100.00%
O84645              	5.29%		
Bootstrap support for O84614 as seed ortholog is 100%.
Bootstrap support for I3L8M1 as seed ortholog is 100%.

Group of orthologs #159. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 S.scrofa:66

O84408              	100.00%		F1RHK0              	100.00%
Bootstrap support for O84408 as seed ortholog is 100%.
Bootstrap support for F1RHK0 as seed ortholog is 100%.

Group of orthologs #160. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 S.scrofa:15

O84589              	100.00%		F1SAZ6              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for F1SAZ6 as seed ortholog is 66%.
Alternative seed ortholog is F1SAP4 (15 bits away from this cluster)

Group of orthologs #161. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 S.scrofa:65

P0CD84              	100.00%		F1RMQ4              	100.00%
Bootstrap support for P0CD84 as seed ortholog is 100%.
Bootstrap support for F1RMQ4 as seed ortholog is 100%.

Group of orthologs #162. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 S.scrofa:65

O84221              	100.00%		F1RVD9              	100.00%
Bootstrap support for O84221 as seed ortholog is 100%.
Bootstrap support for F1RVD9 as seed ortholog is 100%.

Group of orthologs #163. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 S.scrofa:65

P0C0Z8              	100.00%		F1SMZ6              	100.00%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for F1SMZ6 as seed ortholog is 100%.

Group of orthologs #164. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 S.scrofa:65

P0CE04              	100.00%		P62272              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for P62272 as seed ortholog is 100%.

Group of orthologs #165. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 S.scrofa:64

O84128              	100.00%		F1SEG5              	100.00%
                    	       		Q29201              	100.00%
                    	       		F1SP46              	95.15%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for F1SEG5 as seed ortholog is 100%.
Bootstrap support for Q29201 as seed ortholog is 100%.

Group of orthologs #166. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 S.scrofa:64

O84320              	100.00%		F1RYS1              	100.00%
Bootstrap support for O84320 as seed ortholog is 100%.
Bootstrap support for F1RYS1 as seed ortholog is 100%.

Group of orthologs #167. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 S.scrofa:64

O84395              	100.00%		F1S3D1              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for F1S3D1 as seed ortholog is 100%.

Group of orthologs #168. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 S.scrofa:3

O84822              	100.00%		F1S814              	100.00%
                    	       		F1SJE6              	62.56%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for F1S814 as seed ortholog is 50%.
Alternative seed ortholog is F1RQM2 (3 bits away from this cluster)

Group of orthologs #169. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 S.scrofa:16

O84781              	100.00%		F1RJV7              	100.00%
                    	       		F1RSZ3              	65.53%
                    	       		I3LCL6              	57.26%
                    	       		F1S5J8              	57.05%
                    	       		F1SR72              	18.30%
                    	       		Q2QC87              	17.31%
                    	       		F1SBT8              	8.12%
                    	       		F1RKU1              	5.41%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for F1RJV7 as seed ortholog is 60%.
Alternative seed ortholog is F1SAS2 (16 bits away from this cluster)

Group of orthologs #170. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 S.scrofa:7

O84633              	100.00%		F1RTW8              	100.00%
Bootstrap support for O84633 as seed ortholog is 100%.
Bootstrap support for F1RTW8 as seed ortholog is 56%.
Alternative seed ortholog is F1RGX0 (7 bits away from this cluster)

Group of orthologs #171. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 S.scrofa:60

P66123              	100.00%		F1RT79              	100.00%
Bootstrap support for P66123 as seed ortholog is 100%.
Bootstrap support for F1RT79 as seed ortholog is 100%.

Group of orthologs #172. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 S.scrofa:60

O84650              	100.00%		I3LP14              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for I3LP14 as seed ortholog is 100%.

Group of orthologs #173. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 S.scrofa:59

O84379              	100.00%		I3L6F7              	100.00%
                    	       		F1SCU8              	42.48%
                    	       		F1RXB5              	28.65%
                    	       		F1RXB6              	25.00%
                    	       		I3LIX2              	17.48%
                    	       		F1RK99              	6.64%
                    	       		F1RNK6              	5.75%
                    	       		I3LN75              	5.42%
Bootstrap support for O84379 as seed ortholog is 100%.
Bootstrap support for I3L6F7 as seed ortholog is 100%.

Group of orthologs #174. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 S.scrofa:59

O84218              	100.00%		A8HG48              	100.00%
                    	       		F1RNW8              	39.81%
                    	       		I3LQW3              	25.60%
Bootstrap support for O84218 as seed ortholog is 100%.
Bootstrap support for A8HG48 as seed ortholog is 100%.

Group of orthologs #175. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 S.scrofa:59

O84029              	100.00%		F1SU70              	100.00%
Bootstrap support for O84029 as seed ortholog is 100%.
Bootstrap support for F1SU70 as seed ortholog is 100%.

Group of orthologs #176. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 S.scrofa:58

O84557              	100.00%		I3LUW7              	100.00%
                    	       		F1S3W1              	17.59%
Bootstrap support for O84557 as seed ortholog is 100%.
Bootstrap support for I3LUW7 as seed ortholog is 100%.

Group of orthologs #177. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 S.scrofa:58

P0CD83              	100.00%		F1RI89              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for F1RI89 as seed ortholog is 100%.

Group of orthologs #178. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 S.scrofa:57

O84840              	100.00%		F1RSX7              	100.00%
Bootstrap support for O84840 as seed ortholog is 100%.
Bootstrap support for F1RSX7 as seed ortholog is 100%.

Group of orthologs #179. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 S.scrofa:56

O84826              	100.00%		I3LSU6              	100.00%
                    	       		F1SHA9              	26.20%
                    	       		I3L5W9              	23.99%
                    	       		I3L884              	14.39%
                    	       		F1SH74              	11.62%
Bootstrap support for O84826 as seed ortholog is 100%.
Bootstrap support for I3LSU6 as seed ortholog is 100%.

Group of orthologs #180. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 S.scrofa:2

O84689              	100.00%		F1SGB2              	100.00%
                    	       		I3L9H5              	5.54%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for F1SGB2 as seed ortholog is 55%.
Alternative seed ortholog is F1RH91 (2 bits away from this cluster)

Group of orthologs #181. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 S.scrofa:56

O84284              	100.00%		F1S7D0              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for F1S7D0 as seed ortholog is 100%.

Group of orthologs #182. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 S.scrofa:56

O84527              	100.00%		Q0Z8U2              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for Q0Z8U2 as seed ortholog is 100%.

Group of orthologs #183. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 S.scrofa:55

P66480              	100.00%		P62844              	100.00%
Bootstrap support for P66480 as seed ortholog is 100%.
Bootstrap support for P62844 as seed ortholog is 100%.

Group of orthologs #184. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 S.scrofa:54

P0CE02              	100.00%		F1SMQ1              	100.00%
                    	       		A1XQU9              	86.02%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for F1SMQ1 as seed ortholog is 100%.

Group of orthologs #185. Best score 53 bits
Score difference with first non-orthologous sequence - C.trachomatis:53 S.scrofa:53

O84618              	100.00%		P00377              	100.00%
Bootstrap support for O84618 as seed ortholog is 100%.
Bootstrap support for P00377 as seed ortholog is 100%.

Group of orthologs #186. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 S.scrofa:51

P0A4C8              	100.00%		I3LJ87              	100.00%
                    	       		F1S275              	74.15%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for I3LJ87 as seed ortholog is 100%.

Group of orthologs #187. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 S.scrofa:51

O84032              	100.00%		F1SDX8              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for F1SDX8 as seed ortholog is 100%.

Group of orthologs #188. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 S.scrofa:50

P0CD80              	100.00%		F1SKQ1              	100.00%
                    	       		B0M1M6              	46.37%
                    	       		F1S9W9              	5.01%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for F1SKQ1 as seed ortholog is 100%.

Group of orthologs #189. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 S.scrofa:49

P66370              	100.00%		F2Z512              	100.00%
                    	       		Q6SA96              	100.00%
                    	       		F1RS51              	44.44%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for F2Z512 as seed ortholog is 100%.
Bootstrap support for Q6SA96 as seed ortholog is 100%.

Group of orthologs #190. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 S.scrofa:49

O84459              	100.00%		F1RWN0              	100.00%
                    	       		A5A8Y7              	41.24%
Bootstrap support for O84459 as seed ortholog is 100%.
Bootstrap support for F1RWN0 as seed ortholog is 100%.

Group of orthologs #191. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 S.scrofa:49

O84457              	100.00%		I3LAQ3              	100.00%
                    	       		F1RW13              	70.02%
Bootstrap support for O84457 as seed ortholog is 100%.
Bootstrap support for I3LAQ3 as seed ortholog is 100%.

Group of orthologs #192. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 S.scrofa:45

O84776              	100.00%		P50584              	100.00%
Bootstrap support for O84776 as seed ortholog is 100%.
Bootstrap support for P50584 as seed ortholog is 100%.

Group of orthologs #193. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 S.scrofa:44

O84496              	100.00%		P0C5I2              	100.00%
                    	       		I3LUP1              	23.31%
                    	       		I3L5P2              	17.30%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for P0C5I2 as seed ortholog is 100%.

Group of orthologs #194. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 S.scrofa:43

O84778              	100.00%		F1SEN2              	100.00%
Bootstrap support for O84778 as seed ortholog is 100%.
Bootstrap support for F1SEN2 as seed ortholog is 100%.

Group of orthologs #195. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 S.scrofa:40

O84263              	100.00%		I3LSA8              	100.00%
O84541              	14.68%		I3L5D1              	33.26%
Bootstrap support for O84263 as seed ortholog is 100%.
Bootstrap support for I3LSA8 as seed ortholog is 100%.