###################################
63 groups of orthologs
66 in-paralogs from C.trachomatis
66 in-paralogs from R.glutinis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 688 bits
Score difference with first non-orthologous sequence - C.trachomatis:688 R.glutinis:526

P17821              	100.00%		G0SZC5              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for G0SZC5 as seed ortholog is 100%.

Group of orthologs #2. Best score 531 bits
Score difference with first non-orthologous sequence - C.trachomatis:531 R.glutinis:531

O84057              	100.00%		G0SYP1              	100.00%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for G0SYP1 as seed ortholog is 100%.

Group of orthologs #3. Best score 528 bits
Score difference with first non-orthologous sequence - C.trachomatis:528 R.glutinis:528

O84348              	100.00%		G0SX31              	100.00%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for G0SX31 as seed ortholog is 100%.

Group of orthologs #4. Best score 525 bits
Score difference with first non-orthologous sequence - C.trachomatis:525 R.glutinis:525

O84444              	100.00%		G0SVI9              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for G0SVI9 as seed ortholog is 100%.

Group of orthologs #5. Best score 488 bits
Score difference with first non-orthologous sequence - C.trachomatis:488 R.glutinis:488

O84304              	100.00%		G0SVD8              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for G0SVD8 as seed ortholog is 100%.

Group of orthologs #6. Best score 488 bits
Score difference with first non-orthologous sequence - C.trachomatis:488 R.glutinis:488

O84754              	100.00%		G0SZ41              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for G0SZ41 as seed ortholog is 100%.

Group of orthologs #7. Best score 477 bits
Score difference with first non-orthologous sequence - C.trachomatis:477 R.glutinis:477

O84585              	100.00%		G0SUY0              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for G0SUY0 as seed ortholog is 100%.

Group of orthologs #8. Best score 470 bits
Score difference with first non-orthologous sequence - C.trachomatis:470 R.glutinis:470

O84863              	100.00%		G0SWB9              	100.00%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for G0SWB9 as seed ortholog is 100%.

Group of orthologs #9. Best score 440 bits
Score difference with first non-orthologous sequence - C.trachomatis:440 R.glutinis:440

O84848              	100.00%		G0SVN1              	100.00%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for G0SVN1 as seed ortholog is 100%.

Group of orthologs #10. Best score 348 bits
Score difference with first non-orthologous sequence - C.trachomatis:348 R.glutinis:348

P0CE13              	100.00%		G0T0M2              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for G0T0M2 as seed ortholog is 100%.

Group of orthologs #11. Best score 322 bits
Score difference with first non-orthologous sequence - C.trachomatis:322 R.glutinis:322

O84098              	100.00%		G0SZ17              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for G0SZ17 as seed ortholog is 100%.

Group of orthologs #12. Best score 321 bits
Score difference with first non-orthologous sequence - C.trachomatis:321 R.glutinis:321

O84711              	100.00%		G0SYH1              	100.00%
Bootstrap support for O84711 as seed ortholog is 100%.
Bootstrap support for G0SYH1 as seed ortholog is 100%.

Group of orthologs #13. Best score 300 bits
Score difference with first non-orthologous sequence - C.trachomatis:300 R.glutinis:300

O84797              	100.00%		G0T037              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for G0T037 as seed ortholog is 100%.

Group of orthologs #14. Best score 272 bits
Score difference with first non-orthologous sequence - C.trachomatis:272 R.glutinis:272

O84451              	100.00%		G0T048              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for G0T048 as seed ortholog is 100%.

Group of orthologs #15. Best score 262 bits
Score difference with first non-orthologous sequence - C.trachomatis:262 R.glutinis:144

O84006              	100.00%		G0SVN8              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for G0SVN8 as seed ortholog is 98%.

Group of orthologs #16. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:252 R.glutinis:252

O84316              	100.00%		G0SWB1              	100.00%
                    	       		G0SXA8              	7.84%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for G0SWB1 as seed ortholog is 100%.

Group of orthologs #17. Best score 248 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 R.glutinis:248

O84026              	100.00%		G0T1J4              	100.00%
Bootstrap support for O84026 as seed ortholog is 99%.
Bootstrap support for G0T1J4 as seed ortholog is 100%.

Group of orthologs #18. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:122 R.glutinis:247

O84022              	100.00%		G0SXW4              	100.00%
Bootstrap support for O84022 as seed ortholog is 97%.
Bootstrap support for G0SXW4 as seed ortholog is 100%.

Group of orthologs #19. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 R.glutinis:247

P0CD72              	100.00%		G0T1C2              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for G0T1C2 as seed ortholog is 100%.

Group of orthologs #20. Best score 227 bits
Score difference with first non-orthologous sequence - C.trachomatis:227 R.glutinis:160

O84352              	100.00%		G0SZR9              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for G0SZR9 as seed ortholog is 99%.

Group of orthologs #21. Best score 226 bits
Score difference with first non-orthologous sequence - C.trachomatis:226 R.glutinis:226

O84787              	100.00%		G0SYI7              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for G0SYI7 as seed ortholog is 100%.

Group of orthologs #22. Best score 211 bits
Score difference with first non-orthologous sequence - C.trachomatis:211 R.glutinis:211

O84007              	100.00%		G0SY72              	100.00%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for G0SY72 as seed ortholog is 100%.

Group of orthologs #23. Best score 191 bits
Score difference with first non-orthologous sequence - C.trachomatis:191 R.glutinis:191

O84297              	100.00%		G0SZS7              	100.00%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for G0SZS7 as seed ortholog is 100%.

Group of orthologs #24. Best score 185 bits
Score difference with first non-orthologous sequence - C.trachomatis:185 R.glutinis:69

O84732              	100.00%		G0SY42              	100.00%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for G0SY42 as seed ortholog is 94%.

Group of orthologs #25. Best score 176 bits
Score difference with first non-orthologous sequence - C.trachomatis:176 R.glutinis:176

O84066              	100.00%		G0T0L4              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for G0T0L4 as seed ortholog is 100%.

Group of orthologs #26. Best score 172 bits
Score difference with first non-orthologous sequence - C.trachomatis:172 R.glutinis:172

O84423              	100.00%		G0SZC4              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for G0SZC4 as seed ortholog is 100%.

Group of orthologs #27. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 R.glutinis:170

O84028              	100.00%		G0SUD4              	100.00%
Bootstrap support for O84028 as seed ortholog is 100%.
Bootstrap support for G0SUD4 as seed ortholog is 100%.

Group of orthologs #28. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 R.glutinis:170

O84109              	100.00%		G0SUI5              	100.00%
Bootstrap support for O84109 as seed ortholog is 100%.
Bootstrap support for G0SUI5 as seed ortholog is 100%.

Group of orthologs #29. Best score 169 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 R.glutinis:169

O84676              	100.00%		G0SXU8              	100.00%
O84722              	11.70%		
Bootstrap support for O84676 as seed ortholog is 97%.
Bootstrap support for G0SXU8 as seed ortholog is 100%.

Group of orthologs #30. Best score 166 bits
Score difference with first non-orthologous sequence - C.trachomatis:166 R.glutinis:166

O84200              	100.00%		G0SXL2              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for G0SXL2 as seed ortholog is 100%.

Group of orthologs #31. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 R.glutinis:154

O84720              	100.00%		G0SX56              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for G0SX56 as seed ortholog is 100%.

Group of orthologs #32. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 R.glutinis:154

P0CD79              	100.00%		G0T1Z6              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for G0T1Z6 as seed ortholog is 100%.

Group of orthologs #33. Best score 135 bits
Score difference with first non-orthologous sequence - C.trachomatis:135 R.glutinis:135

O84589              	100.00%		G0SXX2              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for G0SXX2 as seed ortholog is 100%.

Group of orthologs #34. Best score 124 bits
Score difference with first non-orthologous sequence - C.trachomatis:124 R.glutinis:124

O84096              	100.00%		G0SUP1              	100.00%
Bootstrap support for O84096 as seed ortholog is 100%.
Bootstrap support for G0SUP1 as seed ortholog is 100%.

Group of orthologs #35. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 R.glutinis:119

O84771              	100.00%		G0SXF0              	100.00%
Bootstrap support for O84771 as seed ortholog is 100%.
Bootstrap support for G0SXF0 as seed ortholog is 100%.

Group of orthologs #36. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 R.glutinis:116

O84843              	100.00%		G0SUF7              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for G0SUF7 as seed ortholog is 100%.

Group of orthologs #37. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 R.glutinis:101

O84435              	100.00%		G0SVW8              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for G0SVW8 as seed ortholog is 100%.

Group of orthologs #38. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 R.glutinis:99

O84779              	100.00%		G0T0P5              	100.00%
Bootstrap support for O84779 as seed ortholog is 100%.
Bootstrap support for G0T0P5 as seed ortholog is 100%.

Group of orthologs #39. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 R.glutinis:97

O84215              	100.00%		G0SZ06              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for G0SZ06 as seed ortholog is 100%.

Group of orthologs #40. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 R.glutinis:94

O84241              	100.00%		G0SVD1              	100.00%
Bootstrap support for O84241 as seed ortholog is 100%.
Bootstrap support for G0SVD1 as seed ortholog is 100%.

Group of orthologs #41. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 R.glutinis:93

P0CE01              	100.00%		G0T0M9              	100.00%
Bootstrap support for P0CE01 as seed ortholog is 100%.
Bootstrap support for G0T0M9 as seed ortholog is 100%.

Group of orthologs #42. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 R.glutinis:87

O84249              	100.00%		G0T250              	100.00%
O84405              	7.98%		
O84058              	5.85%		
Bootstrap support for O84249 as seed ortholog is 100%.
Bootstrap support for G0T250 as seed ortholog is 100%.

Group of orthologs #43. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 R.glutinis:86

O84294              	100.00%		G0SWW5              	100.00%
Bootstrap support for O84294 as seed ortholog is 100%.
Bootstrap support for G0SWW5 as seed ortholog is 100%.

Group of orthologs #44. Best score 85 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 R.glutinis:85

O84535              	100.00%		G0SYE7              	100.00%
Bootstrap support for O84535 as seed ortholog is 100%.
Bootstrap support for G0SYE7 as seed ortholog is 100%.

Group of orthologs #45. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 R.glutinis:81

O84735              	100.00%		G0SV30              	100.00%
Bootstrap support for O84735 as seed ortholog is 100%.
Bootstrap support for G0SV30 as seed ortholog is 100%.

Group of orthologs #46. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 R.glutinis:74

O84350              	100.00%		G0SZ23              	100.00%
Bootstrap support for O84350 as seed ortholog is 100%.
Bootstrap support for G0SZ23 as seed ortholog is 100%.

Group of orthologs #47. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 R.glutinis:72

O84599              	100.00%		G0SX78              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for G0SX78 as seed ortholog is 100%.

Group of orthologs #48. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 R.glutinis:70

O84781              	100.00%		G0SUM6              	100.00%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for G0SUM6 as seed ortholog is 100%.

Group of orthologs #49. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 R.glutinis:70

O84391              	100.00%		G0SYN1              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for G0SYN1 as seed ortholog is 100%.

Group of orthologs #50. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 R.glutinis:67

O84822              	100.00%		G0T1M5              	100.00%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for G0T1M5 as seed ortholog is 100%.

Group of orthologs #51. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 R.glutinis:66

P0A4C8              	100.00%		G0SUH2              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for G0SUH2 as seed ortholog is 100%.

Group of orthologs #52. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 R.glutinis:66

O84792              	100.00%		G0T0N3              	100.00%
Bootstrap support for O84792 as seed ortholog is 100%.
Bootstrap support for G0T0N3 as seed ortholog is 100%.

Group of orthologs #53. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 R.glutinis:20

O84027              	100.00%		G0T1B5              	100.00%
Bootstrap support for O84027 as seed ortholog is 100%.
Bootstrap support for G0T1B5 as seed ortholog is 66%.
Alternative seed ortholog is G0T1M7 (20 bits away from this cluster)

Group of orthologs #54. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 R.glutinis:3

O84395              	100.00%		G0SUQ5              	100.00%
                    	       		G0SW91              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for G0SUQ5 as seed ortholog is 52%.
Alternative seed ortholog is G0SYY2 (3 bits away from this cluster)
Bootstrap support for G0SW91 as seed ortholog is 52%.
Alternative seed ortholog is G0SYY2 (3 bits away from this cluster)

Group of orthologs #55. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 R.glutinis:59

O84469              	100.00%		G0SWT4              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for G0SWT4 as seed ortholog is 100%.

Group of orthologs #56. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 R.glutinis:59

O84547              	100.00%		G0SX28              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for G0SX28 as seed ortholog is 100%.

Group of orthologs #57. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 R.glutinis:57

O84284              	100.00%		G0SXN0              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for G0SXN0 as seed ortholog is 100%.

Group of orthologs #58. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 R.glutinis:54

O84611              	100.00%		G0SW78              	100.00%
Bootstrap support for O84611 as seed ortholog is 100%.
Bootstrap support for G0SW78 as seed ortholog is 100%.

Group of orthologs #59. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 R.glutinis:51

O84851              	100.00%		G0T042              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for G0T042 as seed ortholog is 100%.

Group of orthologs #60. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 R.glutinis:48

O84218              	100.00%		G0SYQ5              	100.00%
                    	       		G0T000              	23.88%
Bootstrap support for O84218 as seed ortholog is 100%.
Bootstrap support for G0SYQ5 as seed ortholog is 100%.

Group of orthologs #61. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 R.glutinis:47

O84809              	100.00%		G0SX37              	100.00%
Bootstrap support for O84809 as seed ortholog is 100%.
Bootstrap support for G0SX37 as seed ortholog is 100%.

Group of orthologs #62. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 R.glutinis:47

O84088              	100.00%		G0SZD8              	100.00%
Bootstrap support for O84088 as seed ortholog is 100%.
Bootstrap support for G0SZD8 as seed ortholog is 100%.

Group of orthologs #63. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 R.glutinis:44

O84687              	100.00%		G0SYU2              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for G0SYU2 as seed ortholog is 100%.