###################################
88 groups of orthologs
95 in-paralogs from C.trachomatis
117 in-paralogs from N.ceranae
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 741 bits
Score difference with first non-orthologous sequence - C.trachomatis:618 N.ceranae:678

O84022              	100.00%		C4V8Q1              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for C4V8Q1 as seed ortholog is 100%.

Group of orthologs #2. Best score 545 bits
Score difference with first non-orthologous sequence - C.trachomatis:545 N.ceranae:190

P17821              	100.00%		C4VAJ8              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for C4VAJ8 as seed ortholog is 99%.

Group of orthologs #3. Best score 522 bits
Score difference with first non-orthologous sequence - C.trachomatis:522 N.ceranae:522

O84115              	100.00%		C4V9R2              	100.00%
Bootstrap support for O84115 as seed ortholog is 100%.
Bootstrap support for C4V9R2 as seed ortholog is 100%.

Group of orthologs #4. Best score 455 bits
Score difference with first non-orthologous sequence - C.trachomatis:455 N.ceranae:389

O84304              	100.00%		C4V924              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for C4V924 as seed ortholog is 100%.

Group of orthologs #5. Best score 432 bits
Score difference with first non-orthologous sequence - C.trachomatis:432 N.ceranae:432

O84834              	100.00%		C4V9T0              	100.00%
                    	       		C4V8X4              	43.76%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for C4V9T0 as seed ortholog is 100%.

Group of orthologs #6. Best score 390 bits
Score difference with first non-orthologous sequence - C.trachomatis:390 N.ceranae:390

O84755              	100.00%		C4V8R6              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for C4V8R6 as seed ortholog is 100%.

Group of orthologs #7. Best score 359 bits
Score difference with first non-orthologous sequence - C.trachomatis:359 N.ceranae:359

Q59321              	100.00%		C4V9X9              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for C4V9X9 as seed ortholog is 100%.

Group of orthologs #8. Best score 349 bits
Score difference with first non-orthologous sequence - C.trachomatis:213 N.ceranae:349

O84310              	100.00%		C4V9P1              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for C4V9P1 as seed ortholog is 100%.

Group of orthologs #9. Best score 324 bits
Score difference with first non-orthologous sequence - C.trachomatis:209 N.ceranae:267

O84786              	100.00%		C4V8R9              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for C4V8R9 as seed ortholog is 100%.

Group of orthologs #10. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 N.ceranae:314

P0CE09              	100.00%		C4V8X8              	100.00%
                    	       		C4V6K7              	16.95%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for C4V8X8 as seed ortholog is 100%.

Group of orthologs #11. Best score 305 bits
Score difference with first non-orthologous sequence - C.trachomatis:305 N.ceranae:305

O84316              	100.00%		C4VAM1              	100.00%
                    	       		C4V991              	12.77%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for C4VAM1 as seed ortholog is 100%.

Group of orthologs #12. Best score 296 bits
Score difference with first non-orthologous sequence - C.trachomatis:296 N.ceranae:296

O84823              	100.00%		C4V8B6              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for C4V8B6 as seed ortholog is 100%.

Group of orthologs #13. Best score 292 bits
Score difference with first non-orthologous sequence - C.trachomatis:292 N.ceranae:292

P0CE13              	100.00%		C4VA61              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for C4VA61 as seed ortholog is 100%.

Group of orthologs #14. Best score 281 bits
Score difference with first non-orthologous sequence - C.trachomatis:281 N.ceranae:281

O84066              	100.00%		C4V998              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for C4V998 as seed ortholog is 100%.

Group of orthologs #15. Best score 275 bits
Score difference with first non-orthologous sequence - C.trachomatis:275 N.ceranae:275

O84035              	100.00%		C4V943              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for C4V943 as seed ortholog is 100%.

Group of orthologs #16. Best score 254 bits
Score difference with first non-orthologous sequence - C.trachomatis:254 N.ceranae:254

O84248              	100.00%		C4VAW6              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for C4VAW6 as seed ortholog is 100%.

Group of orthologs #17. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:127 N.ceranae:251

O84309              	100.00%		C4VBA6              	100.00%
Bootstrap support for O84309 as seed ortholog is 99%.
Bootstrap support for C4VBA6 as seed ortholog is 100%.

Group of orthologs #18. Best score 248 bits
Score difference with first non-orthologous sequence - C.trachomatis:248 N.ceranae:248

O84094              	100.00%		C4VA82              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for C4VA82 as seed ortholog is 100%.

Group of orthologs #19. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 N.ceranae:240

O84797              	100.00%		C4VAQ4              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for C4VAQ4 as seed ortholog is 100%.

Group of orthologs #20. Best score 235 bits
Score difference with first non-orthologous sequence - C.trachomatis:235 N.ceranae:235

O84591              	100.00%		C4VAP2              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for C4VAP2 as seed ortholog is 100%.

Group of orthologs #21. Best score 232 bits
Score difference with first non-orthologous sequence - C.trachomatis:232 N.ceranae:232

O84101              	100.00%		C4VA69              	100.00%
Bootstrap support for O84101 as seed ortholog is 100%.
Bootstrap support for C4VA69 as seed ortholog is 100%.

Group of orthologs #22. Best score 230 bits
Score difference with first non-orthologous sequence - C.trachomatis:230 N.ceranae:230

O84787              	100.00%		C4V7D9              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for C4V7D9 as seed ortholog is 100%.

Group of orthologs #23. Best score 211 bits
Score difference with first non-orthologous sequence - C.trachomatis:211 N.ceranae:211

P0CD72              	100.00%		C4V8S9              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for C4V8S9 as seed ortholog is 100%.

Group of orthologs #24. Best score 192 bits
Score difference with first non-orthologous sequence - C.trachomatis:192 N.ceranae:192

O84352              	100.00%		C4VB75              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for C4VB75 as seed ortholog is 100%.

Group of orthologs #25. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 N.ceranae:190

P0CE21              	100.00%		C4V7F4              	100.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for C4V7F4 as seed ortholog is 100%.

Group of orthologs #26. Best score 187 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 N.ceranae:94

O84028              	100.00%		C4VAG0              	100.00%
Bootstrap support for O84028 as seed ortholog is 98%.
Bootstrap support for C4VAG0 as seed ortholog is 99%.

Group of orthologs #27. Best score 186 bits
Score difference with first non-orthologous sequence - C.trachomatis:186 N.ceranae:186

O84613              	100.00%		C4V7D0              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for C4V7D0 as seed ortholog is 100%.

Group of orthologs #28. Best score 185 bits
Score difference with first non-orthologous sequence - C.trachomatis:185 N.ceranae:185

O84630              	100.00%		C4V6Q0              	100.00%
Bootstrap support for O84630 as seed ortholog is 100%.
Bootstrap support for C4V6Q0 as seed ortholog is 100%.

Group of orthologs #29. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 N.ceranae:171

P0CD78              	100.00%		C4VAU6              	100.00%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for C4VAU6 as seed ortholog is 100%.

Group of orthologs #30. Best score 166 bits
Score difference with first non-orthologous sequence - C.trachomatis:166 N.ceranae:166

O84734              	100.00%		C4V7S0              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for C4V7S0 as seed ortholog is 100%.

Group of orthologs #31. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 N.ceranae:163

O84402              	100.00%		C4V945              	100.00%
Bootstrap support for O84402 as seed ortholog is 100%.
Bootstrap support for C4V945 as seed ortholog is 100%.

Group of orthologs #32. Best score 160 bits
Score difference with first non-orthologous sequence - C.trachomatis:160 N.ceranae:160

O84478              	100.00%		C4V8C3              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for C4V8C3 as seed ortholog is 100%.

Group of orthologs #33. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 N.ceranae:156

O84098              	100.00%		C4V7G1              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for C4V7G1 as seed ortholog is 100%.

Group of orthologs #34. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 N.ceranae:156

O84444              	100.00%		C4V6P4              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for C4V6P4 as seed ortholog is 100%.

Group of orthologs #35. Best score 155 bits
Score difference with first non-orthologous sequence - C.trachomatis:36 N.ceranae:155

O84260              	100.00%		C4V7G9              	100.00%
Bootstrap support for O84260 as seed ortholog is 81%.
Bootstrap support for C4V7G9 as seed ortholog is 100%.

Group of orthologs #36. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 N.ceranae:151

O84068              	100.00%		C4V786              	100.00%
O84502              	24.05%		C4V9P6              	47.89%
                    	       		C4V6W4              	24.21%
                    	       		C4V7C9              	6.45%
Bootstrap support for O84068 as seed ortholog is 100%.
Bootstrap support for C4V786 as seed ortholog is 100%.

Group of orthologs #37. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 N.ceranae:151

O84296              	100.00%		C4V838              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for C4V838 as seed ortholog is 100%.

Group of orthologs #38. Best score 149 bits
Score difference with first non-orthologous sequence - C.trachomatis:149 N.ceranae:149

O84247              	100.00%		C4V8J1              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for C4V8J1 as seed ortholog is 100%.

Group of orthologs #39. Best score 142 bits
Score difference with first non-orthologous sequence - C.trachomatis:142 N.ceranae:142

O84266              	100.00%		C4V869              	100.00%
                    	       		C4V868              	28.48%
                    	       		C4V863              	28.18%
                    	       		C4V825              	11.58%
                    	       		C4V6U1              	9.84%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for C4V869 as seed ortholog is 100%.

Group of orthologs #40. Best score 140 bits
Score difference with first non-orthologous sequence - C.trachomatis:140 N.ceranae:140

O84193              	100.00%		C4V6H9              	100.00%
O84668              	8.08%		
Bootstrap support for O84193 as seed ortholog is 100%.
Bootstrap support for C4V6H9 as seed ortholog is 100%.

Group of orthologs #41. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 N.ceranae:138

O84608              	100.00%		C4V706              	100.00%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for C4V706 as seed ortholog is 100%.

Group of orthologs #42. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 N.ceranae:138

O84460              	100.00%		C4VAL9              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for C4VAL9 as seed ortholog is 100%.

Group of orthologs #43. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 N.ceranae:133

O84196              	100.00%		C4V6U9              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for C4V6U9 as seed ortholog is 100%.

Group of orthologs #44. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 N.ceranae:123

O84835              	100.00%		C4VAJ2              	100.00%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for C4VAJ2 as seed ortholog is 100%.

Group of orthologs #45. Best score 115 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 N.ceranae:115

O84458              	100.00%		C4V9G9              	100.00%
Bootstrap support for O84458 as seed ortholog is 100%.
Bootstrap support for C4V9G9 as seed ortholog is 100%.

Group of orthologs #46. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 N.ceranae:111

O84188              	100.00%		C4V6L7              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for C4V6L7 as seed ortholog is 100%.

Group of orthologs #47. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 N.ceranae:23

P0CD71              	100.00%		C4VAU0              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for C4VAU0 as seed ortholog is 70%.
Alternative seed ortholog is C4V8U1 (23 bits away from this cluster)

Group of orthologs #48. Best score 108 bits
Score difference with first non-orthologous sequence - C.trachomatis:108 N.ceranae:108

O84332              	100.00%		C4V6J8              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for C4V6J8 as seed ortholog is 100%.

Group of orthologs #49. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 N.ceranae:102

O84200              	100.00%		C4V8X0              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for C4V8X0 as seed ortholog is 100%.

Group of orthologs #50. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 N.ceranae:102

O84358              	100.00%		C4V8S2              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for C4V8S2 as seed ortholog is 100%.

Group of orthologs #51. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 N.ceranae:101

O84130              	100.00%		C4VB94              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for C4VB94 as seed ortholog is 100%.

Group of orthologs #52. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 N.ceranae:99

O84579              	100.00%		C4V6P1              	100.00%
Bootstrap support for O84579 as seed ortholog is 100%.
Bootstrap support for C4V6P1 as seed ortholog is 100%.

Group of orthologs #53. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 N.ceranae:99

O84139              	100.00%		C4VA89              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for C4VA89 as seed ortholog is 100%.

Group of orthologs #54. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 N.ceranae:99

P36431              	100.00%		C4V8D9              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for C4V8D9 as seed ortholog is 100%.

Group of orthologs #55. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 N.ceranae:99

O84508              	100.00%		C4V9Q2              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for C4V9Q2 as seed ortholog is 100%.

Group of orthologs #56. Best score 92 bits
Score difference with first non-orthologous sequence - C.trachomatis:92 N.ceranae:92

O84123              	100.00%		C4V7A9              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for C4V7A9 as seed ortholog is 100%.

Group of orthologs #57. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 N.ceranae:90

O84599              	100.00%		C4VAS3              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for C4VAS3 as seed ortholog is 100%.

Group of orthologs #58. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 N.ceranae:87

O84843              	100.00%		C4V6K5              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for C4V6K5 as seed ortholog is 100%.

Group of orthologs #59. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 N.ceranae:86

O84649              	100.00%		C4VAL6              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for C4VAL6 as seed ortholog is 100%.

Group of orthologs #60. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 N.ceranae:34

O84650              	100.00%		C4VA23              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for C4VA23 as seed ortholog is 83%.

Group of orthologs #61. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 N.ceranae:82

O84338              	100.00%		C4V8V1              	100.00%
                    	       		C4V935              	14.50%
                    	       		C4V742              	6.11%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for C4V8V1 as seed ortholog is 100%.

Group of orthologs #62. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 N.ceranae:9

O84732              	100.00%		C4V8Z7              	100.00%
                    	       		C4V9V6              	7.38%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for C4V8Z7 as seed ortholog is 57%.
Alternative seed ortholog is C4V9L9 (9 bits away from this cluster)

Group of orthologs #63. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 N.ceranae:78

O84391              	100.00%		C4V8F1              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for C4V8F1 as seed ortholog is 100%.

Group of orthologs #64. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 N.ceranae:71

O84033              	100.00%		C4V988              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for C4V988 as seed ortholog is 100%.

Group of orthologs #65. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 N.ceranae:69

O84215              	100.00%		C4VBC7              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for C4VBC7 as seed ortholog is 100%.

Group of orthologs #66. Best score 68 bits
Score difference with first non-orthologous sequence - C.trachomatis:68 N.ceranae:68

P0C0Z7              	100.00%		C4V8V8              	100.00%
O84609              	14.65%		C4V788              	15.19%
O84760              	6.50%		C4V6N8              	11.78%
                    	       		C4V7N1              	11.67%
                    	       		C4V9B4              	11.05%
                    	       		C4V7H5              	8.06%
                    	       		C4V7A5              	7.23%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for C4V8V8 as seed ortholog is 100%.

Group of orthologs #67. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 N.ceranae:67

O84294              	100.00%		C4V8P4              	100.00%
Bootstrap support for O84294 as seed ortholog is 100%.
Bootstrap support for C4V8P4 as seed ortholog is 100%.

Group of orthologs #68. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 N.ceranae:66

O84456              	100.00%		C4V7P7              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for C4V7P7 as seed ortholog is 100%.

Group of orthologs #69. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 N.ceranae:66

P0CD81              	100.00%		C4V8R0              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for C4V8R0 as seed ortholog is 100%.

Group of orthologs #70. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 N.ceranae:62

P0A4C8              	100.00%		C4VA15              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for C4VA15 as seed ortholog is 100%.

Group of orthologs #71. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 N.ceranae:61

O84496              	100.00%		C4V855              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for C4V855 as seed ortholog is 100%.

Group of orthologs #72. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:12 N.ceranae:59

O84660              	100.00%		C4V989              	100.00%
O84154              	9.73%		
O84183              	6.08%		
O84132              	5.60%		
Bootstrap support for O84660 as seed ortholog is 66%.
Alternative seed ortholog is O84696 (12 bits away from this cluster)
Bootstrap support for C4V989 as seed ortholog is 100%.

Group of orthologs #73. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 N.ceranae:57

P0CE06              	100.00%		C4V7H7              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for C4V7H7 as seed ortholog is 100%.

Group of orthologs #74. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 N.ceranae:57

O84611              	100.00%		C4V9M3              	100.00%
Bootstrap support for O84611 as seed ortholog is 100%.
Bootstrap support for C4V9M3 as seed ortholog is 100%.

Group of orthologs #75. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 N.ceranae:9

O84442              	100.00%		C4VA26              	100.00%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for C4VA26 as seed ortholog is 62%.
Alternative seed ortholog is C4V6W0 (9 bits away from this cluster)

Group of orthologs #76. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 N.ceranae:56

O84469              	100.00%		C4V6Q9              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for C4V6Q9 as seed ortholog is 100%.

Group of orthologs #77. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 N.ceranae:54

P0CD80              	100.00%		C4V7Q4              	100.00%
                    	       		C4V7I3              	48.15%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for C4V7Q4 as seed ortholog is 100%.

Group of orthologs #78. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 N.ceranae:54

O84547              	100.00%		C4V9J0              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for C4V9J0 as seed ortholog is 100%.

Group of orthologs #79. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 N.ceranae:52

O84720              	100.00%		C4V858              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for C4V858 as seed ortholog is 100%.

Group of orthologs #80. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 N.ceranae:51

O84307              	100.00%		C4V927              	100.00%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for C4V927 as seed ortholog is 100%.

Group of orthologs #81. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 N.ceranae:50

O84527              	100.00%		C4V7W1              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for C4V7W1 as seed ortholog is 100%.

Group of orthologs #82. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 N.ceranae:50

O84589              	100.00%		C4V9E6              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for C4V9E6 as seed ortholog is 100%.

Group of orthologs #83. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 N.ceranae:49

O84781              	100.00%		C4V9Q8              	100.00%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for C4V9Q8 as seed ortholog is 100%.

Group of orthologs #84. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 N.ceranae:47

P66370              	100.00%		C4V7Z3              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for C4V7Z3 as seed ortholog is 100%.

Group of orthologs #85. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 N.ceranae:47

O84032              	100.00%		C4VBD8              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for C4VBD8 as seed ortholog is 100%.

Group of orthologs #86. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 N.ceranae:46

O84503              	100.00%		C4V9X7              	100.00%
Bootstrap support for O84503 as seed ortholog is 100%.
Bootstrap support for C4V9X7 as seed ortholog is 100%.

Group of orthologs #87. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 N.ceranae:44

O84711              	100.00%		C4VA58              	100.00%
                    	       		C4V7P0              	13.71%
                    	       		C4V6X9              	12.70%
                    	       		C4V6N1              	11.95%
                    	       		C4V8P3              	11.95%
                    	       		C4V8A0              	11.82%
                    	       		C4V6I5              	11.82%
                    	       		C4VBE2              	11.70%
Bootstrap support for O84711 as seed ortholog is 100%.
Bootstrap support for C4VA58 as seed ortholog is 100%.

Group of orthologs #88. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 N.ceranae:44

O84544              	100.00%		C4V8I4              	100.00%
                    	       		C4VB60              	72.19%
                    	       		C4V8I3              	23.44%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for C4V8I4 as seed ortholog is 100%.