###################################
133 groups of orthologs
135 in-paralogs from C.trachomatis
139 in-paralogs from M.jannaschii
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 564 bits
Score difference with first non-orthologous sequence - C.trachomatis:473 M.jannaschii:408

O84022              	100.00%		Q58357              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for Q58357 as seed ortholog is 100%.

Group of orthologs #2. Best score 530 bits
Score difference with first non-orthologous sequence - C.trachomatis:530 M.jannaschii:530

Q59321              	100.00%		Q58574              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for Q58574 as seed ortholog is 100%.

Group of orthologs #3. Best score 523 bits
Score difference with first non-orthologous sequence - C.trachomatis:523 M.jannaschii:456

O84126              	100.00%		Q58626              	100.00%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for Q58626 as seed ortholog is 100%.

Group of orthologs #4. Best score 413 bits
Score difference with first non-orthologous sequence - C.trachomatis:413 M.jannaschii:413

O84591              	100.00%		Q60173              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for Q60173 as seed ortholog is 100%.

Group of orthologs #5. Best score 405 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 M.jannaschii:405

O84310              	100.00%		Q57670              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for Q57670 as seed ortholog is 100%.

Group of orthologs #6. Best score 398 bits
Score difference with first non-orthologous sequence - C.trachomatis:398 M.jannaschii:398

O84172              	100.00%		Q60179              	100.00%
Bootstrap support for O84172 as seed ortholog is 100%.
Bootstrap support for Q60179 as seed ortholog is 100%.

Group of orthologs #7. Best score 370 bits
Score difference with first non-orthologous sequence - C.trachomatis:162 M.jannaschii:238

O84304              	100.00%		Q58413              	100.00%
Bootstrap support for O84304 as seed ortholog is 99%.
Bootstrap support for Q58413 as seed ortholog is 99%.

Group of orthologs #8. Best score 334 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 M.jannaschii:241

O84035              	100.00%		Q58659              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for Q58659 as seed ortholog is 100%.

Group of orthologs #9. Best score 302 bits
Score difference with first non-orthologous sequence - C.trachomatis:302 M.jannaschii:302

O84444              	100.00%		Q58448              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for Q58448 as seed ortholog is 100%.

Group of orthologs #10. Best score 293 bits
Score difference with first non-orthologous sequence - C.trachomatis:293 M.jannaschii:293

O84823              	100.00%		Q58815              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for Q58815 as seed ortholog is 100%.

Group of orthologs #11. Best score 286 bits
Score difference with first non-orthologous sequence - C.trachomatis:286 M.jannaschii:286

O84829              	100.00%		Q58643              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for Q58643 as seed ortholog is 100%.

Group of orthologs #12. Best score 281 bits
Score difference with first non-orthologous sequence - C.trachomatis:135 M.jannaschii:281

O84309              	100.00%		Q57669              	100.00%
Bootstrap support for O84309 as seed ortholog is 99%.
Bootstrap support for Q57669 as seed ortholog is 100%.

Group of orthologs #13. Best score 277 bits
Score difference with first non-orthologous sequence - C.trachomatis:277 M.jannaschii:277

O84006              	100.00%		Q58560              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for Q58560 as seed ortholog is 100%.

Group of orthologs #14. Best score 267 bits
Score difference with first non-orthologous sequence - C.trachomatis:267 M.jannaschii:267

O84007              	100.00%		Q57624              	100.00%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for Q57624 as seed ortholog is 100%.

Group of orthologs #15. Best score 267 bits
Score difference with first non-orthologous sequence - C.trachomatis:267 M.jannaschii:67

O84649              	100.00%		Q59046              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for Q59046 as seed ortholog is 81%.

Group of orthologs #16. Best score 265 bits
Score difference with first non-orthologous sequence - C.trachomatis:265 M.jannaschii:265

O84373              	100.00%		Q58575              	100.00%
Bootstrap support for O84373 as seed ortholog is 100%.
Bootstrap support for Q58575 as seed ortholog is 100%.

Group of orthologs #17. Best score 265 bits
Score difference with first non-orthologous sequence - C.trachomatis:265 M.jannaschii:265

O84638              	100.00%		Q60178              	100.00%
Bootstrap support for O84638 as seed ortholog is 100%.
Bootstrap support for Q60178 as seed ortholog is 100%.

Group of orthologs #18. Best score 259 bits
Score difference with first non-orthologous sequence - C.trachomatis:259 M.jannaschii:165

O84212              	100.00%		Q58020              	100.00%
Bootstrap support for O84212 as seed ortholog is 100%.
Bootstrap support for Q58020 as seed ortholog is 99%.

Group of orthologs #19. Best score 255 bits
Score difference with first non-orthologous sequence - C.trachomatis:255 M.jannaschii:255

P0CE09              	100.00%		Q60181              	100.00%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for Q60181 as seed ortholog is 100%.

Group of orthologs #20. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 M.jannaschii:250

O84316              	100.00%		Q58445              	100.00%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for Q58445 as seed ortholog is 100%.

Group of orthologs #21. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 M.jannaschii:73

O84028              	100.00%		Q57565              	100.00%
Bootstrap support for O84028 as seed ortholog is 99%.
Bootstrap support for Q57565 as seed ortholog is 98%.

Group of orthologs #22. Best score 237 bits
Score difference with first non-orthologous sequence - C.trachomatis:237 M.jannaschii:237

O84596              	100.00%		Q60356              	100.00%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for Q60356 as seed ortholog is 100%.

Group of orthologs #23. Best score 233 bits
Score difference with first non-orthologous sequence - C.trachomatis:233 M.jannaschii:233

P0CE21              	100.00%		Q57572              	100.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for Q57572 as seed ortholog is 100%.

Group of orthologs #24. Best score 232 bits
Score difference with first non-orthologous sequence - C.trachomatis:232 M.jannaschii:232

O84754              	100.00%		Q57984              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for Q57984 as seed ortholog is 100%.

Group of orthologs #25. Best score 226 bits
Score difference with first non-orthologous sequence - C.trachomatis:226 M.jannaschii:226

O84828              	100.00%		Q57663              	100.00%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for Q57663 as seed ortholog is 100%.

Group of orthologs #26. Best score 204 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 M.jannaschii:204

O84371              	100.00%		Q57925              	100.00%
Bootstrap support for O84371 as seed ortholog is 99%.
Bootstrap support for Q57925 as seed ortholog is 100%.

Group of orthologs #27. Best score 204 bits
Score difference with first non-orthologous sequence - C.trachomatis:204 M.jannaschii:64

P0CD71              	100.00%		Q57770              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for Q57770 as seed ortholog is 93%.

Group of orthologs #28. Best score 202 bits
Score difference with first non-orthologous sequence - C.trachomatis:202 M.jannaschii:202

P0CD78              	100.00%		Q58058              	100.00%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for Q58058 as seed ortholog is 100%.

Group of orthologs #29. Best score 196 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:196

O84546              	100.00%		Q58950              	100.00%
Bootstrap support for O84546 as seed ortholog is 96%.
Bootstrap support for Q58950 as seed ortholog is 100%.

Group of orthologs #30. Best score 195 bits
Score difference with first non-orthologous sequence - C.trachomatis:195 M.jannaschii:125

O84368              	100.00%		Q57658              	100.00%
Bootstrap support for O84368 as seed ortholog is 100%.
Bootstrap support for Q57658 as seed ortholog is 99%.

Group of orthologs #31. Best score 187 bits
Score difference with first non-orthologous sequence - C.trachomatis:24 M.jannaschii:187

O84772              	100.00%		Q58826              	100.00%
Bootstrap support for O84772 as seed ortholog is 73%.
Alternative seed ortholog is O84433 (24 bits away from this cluster)
Bootstrap support for Q58826 as seed ortholog is 100%.

Group of orthologs #32. Best score 186 bits
Score difference with first non-orthologous sequence - C.trachomatis:186 M.jannaschii:186

O84456              	100.00%		Q58767              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for Q58767 as seed ortholog is 100%.

Group of orthologs #33. Best score 185 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 M.jannaschii:81

O84822              	100.00%		Q58500              	100.00%
Bootstrap support for O84822 as seed ortholog is 99%.
Bootstrap support for Q58500 as seed ortholog is 96%.

Group of orthologs #34. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 M.jannaschii:173

O84234              	100.00%		Q58715              	100.00%
Bootstrap support for O84234 as seed ortholog is 100%.
Bootstrap support for Q58715 as seed ortholog is 100%.

Group of orthologs #35. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 M.jannaschii:171

O84098              	100.00%		Q57710              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for Q57710 as seed ortholog is 100%.

Group of orthologs #36. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 M.jannaschii:163

O84547              	100.00%		Q58406              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for Q58406 as seed ortholog is 100%.

Group of orthologs #37. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 M.jannaschii:163

O84439              	100.00%		Q58992              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for Q58992 as seed ortholog is 100%.

Group of orthologs #38. Best score 161 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 M.jannaschii:59

O84154              	100.00%		Q58903              	100.00%
                    	       		Q58206              	26.62%
Bootstrap support for O84154 as seed ortholog is 98%.
Bootstrap support for Q58903 as seed ortholog is 98%.

Group of orthologs #39. Best score 158 bits
Score difference with first non-orthologous sequence - C.trachomatis:158 M.jannaschii:158

O84383              	100.00%		Q58526              	100.00%
Bootstrap support for O84383 as seed ortholog is 100%.
Bootstrap support for Q58526 as seed ortholog is 100%.

Group of orthologs #40. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:153

O84578              	100.00%		Q58216              	100.00%
Bootstrap support for O84578 as seed ortholog is 99%.
Bootstrap support for Q58216 as seed ortholog is 100%.

Group of orthologs #41. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:150 M.jannaschii:150

O84222              	100.00%		Q57566              	100.00%
Bootstrap support for O84222 as seed ortholog is 100%.
Bootstrap support for Q57566 as seed ortholog is 100%.

Group of orthologs #42. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 M.jannaschii:150

O84101              	100.00%		Q58931              	100.00%
Bootstrap support for O84101 as seed ortholog is 93%.
Bootstrap support for Q58931 as seed ortholog is 100%.

Group of orthologs #43. Best score 143 bits
Score difference with first non-orthologous sequence - C.trachomatis:143 M.jannaschii:143

O84732              	100.00%		Q58623              	100.00%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for Q58623 as seed ortholog is 100%.

Group of orthologs #44. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 M.jannaschii:12

O84660              	100.00%		Q58664              	100.00%
Bootstrap support for O84660 as seed ortholog is 97%.
Bootstrap support for Q58664 as seed ortholog is 66%.
Alternative seed ortholog is Q58663 (12 bits away from this cluster)

Group of orthologs #45. Best score 140 bits
Score difference with first non-orthologous sequence - C.trachomatis:140 M.jannaschii:140

O84123              	100.00%		Q58093              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for Q58093 as seed ortholog is 100%.

Group of orthologs #46. Best score 139 bits
Score difference with first non-orthologous sequence - C.trachomatis:139 M.jannaschii:139

O84200              	100.00%		Q58530              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for Q58530 as seed ortholog is 100%.

Group of orthologs #47. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 M.jannaschii:138

O84585              	100.00%		Q58597              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for Q58597 as seed ortholog is 100%.

Group of orthologs #48. Best score 137 bits
Score difference with first non-orthologous sequence - C.trachomatis:137 M.jannaschii:137

O84367              	100.00%		Q57991              	100.00%
Bootstrap support for O84367 as seed ortholog is 100%.
Bootstrap support for Q57991 as seed ortholog is 100%.

Group of orthologs #49. Best score 136 bits
Score difference with first non-orthologous sequence - C.trachomatis:136 M.jannaschii:136

P36431              	100.00%		Q58635              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for Q58635 as seed ortholog is 100%.

Group of orthologs #50. Best score 135 bits
Score difference with first non-orthologous sequence - C.trachomatis:135 M.jannaschii:135

O84530              	100.00%		P54017              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for P54017 as seed ortholog is 100%.

Group of orthologs #51. Best score 128 bits
Score difference with first non-orthologous sequence - C.trachomatis:128 M.jannaschii:128

O84843              	100.00%		Q57911              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for Q57911 as seed ortholog is 100%.

Group of orthologs #52. Best score 125 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 M.jannaschii:125

O84460              	100.00%		Q57689              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for Q57689 as seed ortholog is 100%.

Group of orthologs #53. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:37 M.jannaschii:41

O84691              	100.00%		Q60350              	100.00%
Bootstrap support for O84691 as seed ortholog is 85%.
Bootstrap support for Q60350 as seed ortholog is 89%.

Group of orthologs #54. Best score 122 bits
Score difference with first non-orthologous sequence - C.trachomatis:122 M.jannaschii:122

O84358              	100.00%		Q58435              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for Q58435 as seed ortholog is 100%.

Group of orthologs #55. Best score 122 bits
Score difference with first non-orthologous sequence - C.trachomatis:122 M.jannaschii:122

O84215              	100.00%		Q58998              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for Q58998 as seed ortholog is 100%.

Group of orthologs #56. Best score 120 bits
Score difference with first non-orthologous sequence - C.trachomatis:120 M.jannaschii:120

O84451              	100.00%		Q58772              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for Q58772 as seed ortholog is 100%.

Group of orthologs #57. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 M.jannaschii:119

O84036              	100.00%		Q58914              	100.00%
Bootstrap support for O84036 as seed ortholog is 100%.
Bootstrap support for Q58914 as seed ortholog is 100%.

Group of orthologs #58. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 M.jannaschii:119

O84350              	100.00%		Q58897              	100.00%
Bootstrap support for O84350 as seed ortholog is 100%.
Bootstrap support for Q58897 as seed ortholog is 100%.

Group of orthologs #59. Best score 118 bits
Score difference with first non-orthologous sequence - C.trachomatis:118 M.jannaschii:118

O84508              	100.00%		Q58661              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for Q58661 as seed ortholog is 100%.

Group of orthologs #60. Best score 114 bits
Score difference with first non-orthologous sequence - C.trachomatis:114 M.jannaschii:114

P0C0Z7              	100.00%		Q58405              	100.00%
O84609              	10.40%		
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for Q58405 as seed ortholog is 100%.

Group of orthologs #61. Best score 112 bits
Score difference with first non-orthologous sequence - C.trachomatis:112 M.jannaschii:112

O84307              	100.00%		Q57675              	100.00%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for Q57675 as seed ortholog is 100%.

Group of orthologs #62. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 M.jannaschii:110

O84599              	100.00%		Q58977              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for Q58977 as seed ortholog is 100%.

Group of orthologs #63. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 M.jannaschii:106

O84608              	100.00%		Q58146              	100.00%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for Q58146 as seed ortholog is 100%.

Group of orthologs #64. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 M.jannaschii:105

O84633              	100.00%		Q58270              	100.00%
Bootstrap support for O84633 as seed ortholog is 100%.
Bootstrap support for Q58270 as seed ortholog is 100%.

Group of orthologs #65. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:2 M.jannaschii:11

O84071              	100.00%		Q57554              	100.00%
                    	       		Q58283              	14.03%
Bootstrap support for O84071 as seed ortholog is 52%.
Alternative seed ortholog is O84421 (2 bits away from this cluster)
Bootstrap support for Q57554 as seed ortholog is 62%.
Alternative seed ortholog is Q58429 (11 bits away from this cluster)

Group of orthologs #66. Best score 100 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 M.jannaschii:50

O84395              	100.00%		Q58786              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for Q58786 as seed ortholog is 90%.

Group of orthologs #67. Best score 100 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 M.jannaschii:32

O84589              	100.00%		Q58810              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for Q58810 as seed ortholog is 78%.

Group of orthologs #68. Best score 100 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 M.jannaschii:100

O84804              	100.00%		Q59001              	100.00%
Bootstrap support for O84804 as seed ortholog is 100%.
Bootstrap support for Q59001 as seed ortholog is 100%.

Group of orthologs #69. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 M.jannaschii:99

P0CD72              	100.00%		Q59000              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for Q59000 as seed ortholog is 100%.

Group of orthologs #70. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 M.jannaschii:35

O84586              	100.00%		Q60283              	100.00%
Bootstrap support for O84586 as seed ortholog is 100%.
Bootstrap support for Q60283 as seed ortholog is 85%.

Group of orthologs #71. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 M.jannaschii:97

O84366              	100.00%		Q57695              	100.00%
Bootstrap support for O84366 as seed ortholog is 100%.
Bootstrap support for Q57695 as seed ortholog is 100%.

Group of orthologs #72. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 M.jannaschii:96

O84369              	100.00%		Q57865              	100.00%
Bootstrap support for O84369 as seed ortholog is 100%.
Bootstrap support for Q57865 as seed ortholog is 100%.

Group of orthologs #73. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 M.jannaschii:34

O84094              	100.00%		Q58728              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for Q58728 as seed ortholog is 75%.

Group of orthologs #74. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 M.jannaschii:94

O84860              	100.00%		Q59071              	100.00%
                    	       		Q58382              	21.23%
Bootstrap support for O84860 as seed ortholog is 100%.
Bootstrap support for Q59071 as seed ortholog is 100%.

Group of orthologs #75. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 M.jannaschii:94

O84321              	100.00%		P54030              	100.00%
Bootstrap support for O84321 as seed ortholog is 100%.
Bootstrap support for P54030 as seed ortholog is 100%.

Group of orthologs #76. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 M.jannaschii:91

O84375              	100.00%		Q58484              	100.00%
Bootstrap support for O84375 as seed ortholog is 100%.
Bootstrap support for Q58484 as seed ortholog is 100%.

Group of orthologs #77. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 M.jannaschii:90

O84173              	100.00%		Q60180              	100.00%
Bootstrap support for O84173 as seed ortholog is 100%.
Bootstrap support for Q60180 as seed ortholog is 100%.

Group of orthologs #78. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:89

O84301              	100.00%		Q57989              	100.00%
Bootstrap support for O84301 as seed ortholog is 100%.
Bootstrap support for Q57989 as seed ortholog is 100%.

Group of orthologs #79. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:28

O84352              	100.00%		Q58129              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for Q58129 as seed ortholog is 76%.

Group of orthologs #80. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:89

O84315              	100.00%		Q58370              	100.00%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for Q58370 as seed ortholog is 100%.

Group of orthologs #81. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 M.jannaschii:89

O84469              	100.00%		Q59069              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for Q59069 as seed ortholog is 100%.

Group of orthologs #82. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 M.jannaschii:88

O84527              	100.00%		P54034              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for P54034 as seed ortholog is 100%.

Group of orthologs #83. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 M.jannaschii:88

O84220              	100.00%		Q57979              	100.00%
Bootstrap support for O84220 as seed ortholog is 100%.
Bootstrap support for Q57979 as seed ortholog is 100%.

Group of orthologs #84. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 M.jannaschii:87

O84501              	100.00%		Q58067              	100.00%
Bootstrap support for O84501 as seed ortholog is 100%.
Bootstrap support for Q58067 as seed ortholog is 100%.

Group of orthologs #85. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 M.jannaschii:87

O84139              	100.00%		Q60369              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for Q60369 as seed ortholog is 100%.

Group of orthologs #86. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 M.jannaschii:87

O84833              	100.00%		Q58609              	100.00%
Bootstrap support for O84833 as seed ortholog is 100%.
Bootstrap support for Q58609 as seed ortholog is 100%.

Group of orthologs #87. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 M.jannaschii:84

O84762              	100.00%		Q58513              	100.00%
Bootstrap support for O84762 as seed ortholog is 100%.
Bootstrap support for Q58513 as seed ortholog is 100%.

Group of orthologs #88. Best score 83 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 M.jannaschii:83

O84782              	100.00%		Q58694              	100.00%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for Q58694 as seed ortholog is 100%.

Group of orthologs #89. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 M.jannaschii:81

P0A4C8              	100.00%		P54045              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for P54045 as seed ortholog is 100%.

Group of orthologs #90. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 M.jannaschii:80

O84617              	100.00%		Q58178              	100.00%
Bootstrap support for O84617 as seed ortholog is 100%.
Bootstrap support for Q58178 as seed ortholog is 100%.

Group of orthologs #91. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 M.jannaschii:79

P0CE04              	100.00%		P54019              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for P54019 as seed ortholog is 100%.

Group of orthologs #92. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 M.jannaschii:76

O84496              	100.00%		Q58501              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for Q58501 as seed ortholog is 100%.

Group of orthologs #93. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 M.jannaschii:75

P0CE03              	100.00%		P54021              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for P54021 as seed ortholog is 100%.

Group of orthologs #94. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 M.jannaschii:75

P0CD81              	100.00%		P54037              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for P54037 as seed ortholog is 100%.

Group of orthologs #95. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 M.jannaschii:75

O84437              	100.00%		Q58519              	100.00%
Bootstrap support for O84437 as seed ortholog is 100%.
Bootstrap support for Q58519 as seed ortholog is 100%.

Group of orthologs #96. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 M.jannaschii:74

O84242              	100.00%		Q58941              	100.00%
Bootstrap support for O84242 as seed ortholog is 100%.
Bootstrap support for Q58941 as seed ortholog is 100%.

Group of orthologs #97. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 M.jannaschii:74

P28539              	100.00%		Q60175              	100.00%
Bootstrap support for P28539 as seed ortholog is 100%.
Bootstrap support for Q60175 as seed ortholog is 100%.

Group of orthologs #98. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 M.jannaschii:73

O84196              	100.00%		Q57878              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for Q57878 as seed ortholog is 100%.

Group of orthologs #99. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 M.jannaschii:71

O84611              	100.00%		Q57679              	100.00%
Bootstrap support for O84611 as seed ortholog is 100%.
Bootstrap support for Q57679 as seed ortholog is 100%.

Group of orthologs #100. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 M.jannaschii:71

O84685              	100.00%		Q58656              	100.00%
Bootstrap support for O84685 as seed ortholog is 100%.
Bootstrap support for Q58656 as seed ortholog is 100%.

Group of orthologs #101. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 M.jannaschii:70

O84320              	100.00%		P54050              	100.00%
Bootstrap support for O84320 as seed ortholog is 100%.
Bootstrap support for P54050 as seed ortholog is 100%.

Group of orthologs #102. Best score 68 bits
Score difference with first non-orthologous sequence - C.trachomatis:68 M.jannaschii:68

O84248              	100.00%		Q58092              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for Q58092 as seed ortholog is 100%.

Group of orthologs #103. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 M.jannaschii:67

O84390              	100.00%		Q58276              	100.00%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for Q58276 as seed ortholog is 100%.

Group of orthologs #104. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 M.jannaschii:66

O84863              	100.00%		Q58339              	100.00%
                    	       		Q58201              	5.37%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for Q58339 as seed ortholog is 100%.

Group of orthologs #105. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 M.jannaschii:66

O84191              	100.00%		Q57741              	100.00%
Bootstrap support for O84191 as seed ortholog is 100%.
Bootstrap support for Q57741 as seed ortholog is 100%.

Group of orthologs #106. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 M.jannaschii:65

O84872              	100.00%		Q57813              	100.00%
O84351              	9.98%		
Bootstrap support for O84872 as seed ortholog is 100%.
Bootstrap support for Q57813 as seed ortholog is 100%.

Group of orthologs #107. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 M.jannaschii:65

O84689              	100.00%		Q58208              	100.00%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for Q58208 as seed ortholog is 100%.

Group of orthologs #108. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 M.jannaschii:11

O84217              	100.00%		Q58980              	100.00%
Bootstrap support for O84217 as seed ortholog is 100%.
Bootstrap support for Q58980 as seed ortholog is 61%.
Alternative seed ortholog is Q57843 (11 bits away from this cluster)

Group of orthologs #109. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 M.jannaschii:64

O84306              	100.00%		Q57674              	100.00%
Bootstrap support for O84306 as seed ortholog is 100%.
Bootstrap support for Q57674 as seed ortholog is 100%.

Group of orthologs #110. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 M.jannaschii:64

O84557              	100.00%		Q60343              	100.00%
Bootstrap support for O84557 as seed ortholog is 100%.
Bootstrap support for Q60343 as seed ortholog is 100%.

Group of orthologs #111. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 M.jannaschii:62

O84110              	100.00%		Q58337              	100.00%
Bootstrap support for O84110 as seed ortholog is 100%.
Bootstrap support for Q58337 as seed ortholog is 100%.

Group of orthologs #112. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 M.jannaschii:61

O84027              	100.00%		Q58338              	100.00%
Bootstrap support for O84027 as seed ortholog is 100%.
Bootstrap support for Q58338 as seed ortholog is 100%.

Group of orthologs #113. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 M.jannaschii:60

O84087              	100.00%		Q58533              	100.00%
Bootstrap support for O84087 as seed ortholog is 100%.
Bootstrap support for Q58533 as seed ortholog is 100%.

Group of orthologs #114. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 M.jannaschii:59

P0CE02              	100.00%		P54029              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for P54029 as seed ortholog is 100%.

Group of orthologs #115. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 M.jannaschii:58

O84032              	100.00%		Q57599              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for Q57599 as seed ortholog is 100%.

Group of orthologs #116. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:9 M.jannaschii:58

O84219              	100.00%		Q57909              	100.00%
Bootstrap support for O84219 as seed ortholog is 59%.
Alternative seed ortholog is O84847 (9 bits away from this cluster)
Bootstrap support for Q57909 as seed ortholog is 100%.

Group of orthologs #117. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 M.jannaschii:57

P0CE01              	100.00%		P54042              	100.00%
Bootstrap support for P0CE01 as seed ortholog is 100%.
Bootstrap support for P54042 as seed ortholog is 100%.

Group of orthologs #118. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 M.jannaschii:56

P0CE06              	100.00%		P54063              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for P54063 as seed ortholog is 100%.

Group of orthologs #119. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 M.jannaschii:56

O84381              	100.00%		Q60176              	100.00%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for Q60176 as seed ortholog is 100%.

Group of orthologs #120. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 M.jannaschii:56

O84730              	100.00%		Q59014              	100.00%
Bootstrap support for O84730 as seed ortholog is 100%.
Bootstrap support for Q59014 as seed ortholog is 100%.

Group of orthologs #121. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 M.jannaschii:55

P0CE05              	100.00%		P54036              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for P54036 as seed ortholog is 100%.

Group of orthologs #122. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 M.jannaschii:54

O84128              	100.00%		P54024              	100.00%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for P54024 as seed ortholog is 100%.

Group of orthologs #123. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 M.jannaschii:54

P0CD88              	100.00%		P54040              	100.00%
Bootstrap support for P0CD88 as seed ortholog is 100%.
Bootstrap support for P54040 as seed ortholog is 100%.

Group of orthologs #124. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 M.jannaschii:52

P0CD80              	100.00%		Q57702              	100.00%
                    	       		Q49593              	8.03%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for Q57702 as seed ortholog is 100%.

Group of orthologs #125. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 M.jannaschii:52

O84737              	100.00%		Q57751              	100.00%
Bootstrap support for O84737 as seed ortholog is 100%.
Bootstrap support for Q57751 as seed ortholog is 100%.

Group of orthologs #126. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 M.jannaschii:52

P0CD75              	100.00%		Q58463              	100.00%
Bootstrap support for P0CD75 as seed ortholog is 100%.
Bootstrap support for Q58463 as seed ortholog is 100%.

Group of orthologs #127. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 M.jannaschii:50

O84044              	100.00%		Q58889              	100.00%
                    	       		Q58576              	17.66%
Bootstrap support for O84044 as seed ortholog is 100%.
Bootstrap support for Q58889 as seed ortholog is 100%.

Group of orthologs #128. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 M.jannaschii:47

O84127              	100.00%		P54023              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for P54023 as seed ortholog is 100%.

Group of orthologs #129. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 M.jannaschii:46

P66370              	100.00%		P54062              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for P54062 as seed ortholog is 100%.

Group of orthologs #130. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 M.jannaschii:45

O84687              	100.00%		P54109              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for P54109 as seed ortholog is 100%.

Group of orthologs #131. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 M.jannaschii:43

P0CE07              	100.00%		P54041              	100.00%
Bootstrap support for P0CE07 as seed ortholog is 100%.
Bootstrap support for P54041 as seed ortholog is 100%.

Group of orthologs #132. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 M.jannaschii:43

O84289              	100.00%		Q58531              	100.00%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for Q58531 as seed ortholog is 100%.

Group of orthologs #133. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 M.jannaschii:42

O84332              	100.00%		Q58923              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for Q58923 as seed ortholog is 100%.