###################################
141 groups of orthologs
144 in-paralogs from C.trachomatis
192 in-paralogs from L.major
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 887 bits
Score difference with first non-orthologous sequence - C.trachomatis:778 L.major:887

O84022              	100.00%		Q4Q0J9              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for Q4Q0J9 as seed ortholog is 100%.

Group of orthologs #2. Best score 702 bits
Score difference with first non-orthologous sequence - C.trachomatis:132 L.major:18

O84115              	100.00%		E9ADY5              	100.00%
Bootstrap support for O84115 as seed ortholog is 98%.
Bootstrap support for E9ADY5 as seed ortholog is 68%.
Alternative seed ortholog is E9ACE5 (18 bits away from this cluster)

Group of orthologs #3. Best score 654 bits
Score difference with first non-orthologous sequence - C.trachomatis:654 L.major:112

P17821              	100.00%		Q4Q744              	100.00%
                    	       		Q4Q745              	100.00%
                    	       		Q4Q740              	96.55%
                    	       		Q4Q747              	82.92%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for Q4Q744 as seed ortholog is 99%.
Bootstrap support for Q4Q745 as seed ortholog is 99%.

Group of orthologs #4. Best score 549 bits
Score difference with first non-orthologous sequence - C.trachomatis:372 L.major:209

P0C0Z7              	100.00%		Q4Q1M0              	100.00%
                    	       		Q4Q1M1              	72.05%
                    	       		Q4Q594              	11.60%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for Q4Q1M0 as seed ortholog is 100%.

Group of orthologs #5. Best score 527 bits
Score difference with first non-orthologous sequence - C.trachomatis:409 L.major:445

O84304              	100.00%		Q4Q6X7              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for Q4Q6X7 as seed ortholog is 100%.

Group of orthologs #6. Best score 501 bits
Score difference with first non-orthologous sequence - C.trachomatis:501 L.major:501

O84057              	100.00%		E9AD65              	100.00%
                    	       		Q4Q171              	11.02%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for E9AD65 as seed ortholog is 100%.

Group of orthologs #7. Best score 492 bits
Score difference with first non-orthologous sequence - C.trachomatis:492 L.major:492

O84755              	100.00%		Q4QAC4              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for Q4QAC4 as seed ortholog is 100%.

Group of orthologs #8. Best score 451 bits
Score difference with first non-orthologous sequence - C.trachomatis:451 L.major:451

O84834              	100.00%		Q4Q8H8              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for Q4Q8H8 as seed ortholog is 100%.

Group of orthologs #9. Best score 443 bits
Score difference with first non-orthologous sequence - C.trachomatis:443 L.major:443

O84754              	100.00%		Q4QBJ3              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for Q4QBJ3 as seed ortholog is 100%.

Group of orthologs #10. Best score 439 bits
Score difference with first non-orthologous sequence - C.trachomatis:439 L.major:140

O84444              	100.00%		Q4Q219              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for Q4Q219 as seed ortholog is 99%.

Group of orthologs #11. Best score 418 bits
Score difference with first non-orthologous sequence - C.trachomatis:418 L.major:418

O84392              	100.00%		E9AF04              	100.00%
Bootstrap support for O84392 as seed ortholog is 100%.
Bootstrap support for E9AF04 as seed ortholog is 100%.

Group of orthologs #12. Best score 413 bits
Score difference with first non-orthologous sequence - C.trachomatis:413 L.major:47

O84126              	100.00%		E9ABZ4              	100.00%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for E9ABZ4 as seed ortholog is 89%.

Group of orthologs #13. Best score 411 bits
Score difference with first non-orthologous sequence - C.trachomatis:411 L.major:411

O84585              	100.00%		E9AEW4              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for E9AEW4 as seed ortholog is 100%.

Group of orthologs #14. Best score 403 bits
Score difference with first non-orthologous sequence - C.trachomatis:403 L.major:403

O84460              	100.00%		E9ADB2              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for E9ADB2 as seed ortholog is 100%.

Group of orthologs #15. Best score 395 bits
Score difference with first non-orthologous sequence - C.trachomatis:395 L.major:395

Q59321              	100.00%		Q4QCY4              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for Q4QCY4 as seed ortholog is 100%.

Group of orthologs #16. Best score 385 bits
Score difference with first non-orthologous sequence - C.trachomatis:385 L.major:228

P0CD71              	100.00%		Q4QDW8              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for Q4QDW8 as seed ortholog is 100%.

Group of orthologs #17. Best score 372 bits
Score difference with first non-orthologous sequence - C.trachomatis:372 L.major:34

O84848              	100.00%		Q4Q1E9              	100.00%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for Q4Q1E9 as seed ortholog is 83%.

Group of orthologs #18. Best score 370 bits
Score difference with first non-orthologous sequence - C.trachomatis:370 L.major:370

O84310              	100.00%		Q4Q2H7              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for Q4Q2H7 as seed ortholog is 100%.

Group of orthologs #19. Best score 352 bits
Score difference with first non-orthologous sequence - C.trachomatis:352 L.major:352

O84591              	100.00%		Q4QFL8              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for Q4QFL8 as seed ortholog is 100%.

Group of orthologs #20. Best score 337 bits
Score difference with first non-orthologous sequence - C.trachomatis:337 L.major:216

O84067              	100.00%		Q4Q3F0              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for Q4Q3F0 as seed ortholog is 99%.

Group of orthologs #21. Best score 324 bits
Score difference with first non-orthologous sequence - C.trachomatis:324 L.major:324

O84829              	100.00%		Q4Q9M4              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for Q4Q9M4 as seed ortholog is 100%.

Group of orthologs #22. Best score 321 bits
Score difference with first non-orthologous sequence - C.trachomatis:321 L.major:321

P0CD78              	100.00%		Q4QD33              	100.00%
                    	       		Q4QD34              	100.00%
                    	       		Q4Q6V1              	5.61%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for Q4QD33 as seed ortholog is 100%.
Bootstrap support for Q4QD34 as seed ortholog is 100%.

Group of orthologs #23. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 L.major:232

P0CE13              	100.00%		Q4Q6Z4              	100.00%
                    	       		Q4Q6Z5              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for Q4Q6Z4 as seed ortholog is 100%.
Bootstrap support for Q4Q6Z5 as seed ortholog is 100%.

Group of orthologs #24. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 L.major:314

O84823              	100.00%		Q4QIY2              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for Q4QIY2 as seed ortholog is 100%.

Group of orthologs #25. Best score 299 bits
Score difference with first non-orthologous sequence - C.trachomatis:299 L.major:87

O84248              	100.00%		Q4Q9R8              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for Q4Q9R8 as seed ortholog is 99%.

Group of orthologs #26. Best score 299 bits
Score difference with first non-orthologous sequence - C.trachomatis:299 L.major:299

O84066              	100.00%		Q9NGR0              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for Q9NGR0 as seed ortholog is 100%.

Group of orthologs #27. Best score 297 bits
Score difference with first non-orthologous sequence - C.trachomatis:242 L.major:118

O84561              	100.00%		Q4Q4U1              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for Q4Q4U1 as seed ortholog is 99%.

Group of orthologs #28. Best score 283 bits
Score difference with first non-orthologous sequence - C.trachomatis:283 L.major:283

O84786              	100.00%		Q4QFF7              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for Q4QFF7 as seed ortholog is 100%.

Group of orthologs #29. Best score 280 bits
Score difference with first non-orthologous sequence - C.trachomatis:280 L.major:280

O84188              	100.00%		Q4Q3K1              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for Q4Q3K1 as seed ortholog is 100%.

Group of orthologs #30. Best score 279 bits
Score difference with first non-orthologous sequence - C.trachomatis:279 L.major:279

P0CE21              	100.00%		E9AEI0              	100.00%
                    	       		E9AEH9              	80.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for E9AEI0 as seed ortholog is 100%.

Group of orthologs #31. Best score 276 bits
Score difference with first non-orthologous sequence - C.trachomatis:276 L.major:276

P0CD72              	100.00%		Q4QGN9              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for Q4QGN9 as seed ortholog is 100%.

Group of orthologs #32. Best score 271 bits
Score difference with first non-orthologous sequence - C.trachomatis:271 L.major:271

O84315              	100.00%		Q4QEU3              	100.00%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for Q4QEU3 as seed ortholog is 100%.

Group of orthologs #33. Best score 268 bits
Score difference with first non-orthologous sequence - C.trachomatis:268 L.major:268

O84098              	100.00%		Q4QBM3              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for Q4QBM3 as seed ortholog is 100%.

Group of orthologs #34. Best score 260 bits
Score difference with first non-orthologous sequence - C.trachomatis:260 L.major:260

O84439              	100.00%		Q4Q828              	100.00%
                    	       		Q4QFK2              	40.55%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for Q4Q828 as seed ortholog is 100%.

Group of orthologs #35. Best score 260 bits
Score difference with first non-orthologous sequence - C.trachomatis:260 L.major:260

O84831              	100.00%		Q4QIT4              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for Q4QIT4 as seed ortholog is 100%.

Group of orthologs #36. Best score 258 bits
Score difference with first non-orthologous sequence - C.trachomatis:258 L.major:258

O84316              	100.00%		Q4Q600              	100.00%
                    	       		Q4Q3H2              	11.47%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for Q4Q600 as seed ortholog is 100%.

Group of orthologs #37. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:252 L.major:252

O84828              	100.00%		Q4Q1C4              	100.00%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for Q4Q1C4 as seed ortholog is 100%.

Group of orthologs #38. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 L.major:250

O84352              	100.00%		E9ACG3              	100.00%
                    	       		Q4Q4I8              	6.51%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for E9ACG3 as seed ortholog is 100%.

Group of orthologs #39. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 L.major:247

O84309              	100.00%		Q4Q821              	100.00%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for Q4Q821 as seed ortholog is 100%.

Group of orthologs #40. Best score 246 bits
Score difference with first non-orthologous sequence - C.trachomatis:246 L.major:16

O84094              	100.00%		E9ACV1              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for E9ACV1 as seed ortholog is 65%.
Alternative seed ortholog is E9ADG1 (16 bits away from this cluster)

Group of orthologs #41. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 L.major:116

O84058              	100.00%		Q4Q822              	100.00%
Bootstrap support for O84058 as seed ortholog is 98%.
Bootstrap support for Q4Q822 as seed ortholog is 99%.

Group of orthologs #42. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 L.major:244

O84642              	100.00%		Q4QAU4              	100.00%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for Q4QAU4 as seed ortholog is 100%.

Group of orthologs #43. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 L.major:244

O84787              	100.00%		Q4QGR8              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for Q4QGR8 as seed ortholog is 100%.

Group of orthologs #44. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 L.major:186

O84381              	100.00%		Q4Q7X6              	100.00%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for Q4Q7X6 as seed ortholog is 100%.

Group of orthologs #45. Best score 238 bits
Score difference with first non-orthologous sequence - C.trachomatis:238 L.major:66

O84698              	100.00%		Q4QH82              	100.00%
                    	       		Q4QHL7              	100.00%
                    	       		E9ACJ5              	37.67%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for Q4QH82 as seed ortholog is 78%.
Bootstrap support for Q4QHL7 as seed ortholog is 78%.

Group of orthologs #46. Best score 236 bits
Score difference with first non-orthologous sequence - C.trachomatis:236 L.major:35

O84345              	100.00%		O97016              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for O97016 as seed ortholog is 87%.

Group of orthologs #47. Best score 236 bits
Score difference with first non-orthologous sequence - C.trachomatis:236 L.major:236

O84562              	100.00%		Q4QDI6              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for Q4QDI6 as seed ortholog is 100%.

Group of orthologs #48. Best score 236 bits
Score difference with first non-orthologous sequence - C.trachomatis:236 L.major:89

O84049              	100.00%		Q7KF27              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for Q7KF27 as seed ortholog is 99%.

Group of orthologs #49. Best score 235 bits
Score difference with first non-orthologous sequence - C.trachomatis:235 L.major:235

P0CE09              	100.00%		Q4QD43              	100.00%
                    	       		Q4Q6P8              	16.63%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for Q4QD43 as seed ortholog is 100%.

Group of orthologs #50. Best score 230 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 L.major:79

O84249              	100.00%		Q4Q1F5              	100.00%
Bootstrap support for O84249 as seed ortholog is 98%.
Bootstrap support for Q4Q1F5 as seed ortholog is 91%.

Group of orthologs #51. Best score 228 bits
Score difference with first non-orthologous sequence - C.trachomatis:228 L.major:228

O84297              	100.00%		Q4Q2G5              	100.00%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for Q4Q2G5 as seed ortholog is 100%.

Group of orthologs #52. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:223 L.major:223

O84081              	100.00%		Q4Q9F9              	100.00%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for Q4Q9F9 as seed ortholog is 100%.

Group of orthologs #53. Best score 222 bits
Score difference with first non-orthologous sequence - C.trachomatis:222 L.major:128

O84596              	100.00%		Q4QAG8              	100.00%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for Q4QAG8 as seed ortholog is 99%.

Group of orthologs #54. Best score 214 bits
Score difference with first non-orthologous sequence - C.trachomatis:214 L.major:214

O84775              	100.00%		Q4Q3R4              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for Q4Q3R4 as seed ortholog is 100%.

Group of orthologs #55. Best score 210 bits
Score difference with first non-orthologous sequence - C.trachomatis:210 L.major:15

O84797              	100.00%		Q4Q1M8              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for Q4Q1M8 as seed ortholog is 61%.
Alternative seed ortholog is Q4QF38 (15 bits away from this cluster)

Group of orthologs #56. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 L.major:205

O84423              	100.00%		Q4Q1C0              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for Q4Q1C0 as seed ortholog is 100%.

Group of orthologs #57. Best score 195 bits
Score difference with first non-orthologous sequence - C.trachomatis:195 L.major:195

O84859              	100.00%		Q4QDG7              	100.00%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for Q4QDG7 as seed ortholog is 100%.

Group of orthologs #58. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 L.major:190

O84332              	100.00%		Q4QAP8              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for Q4QAP8 as seed ortholog is 100%.

Group of orthologs #59. Best score 182 bits
Score difference with first non-orthologous sequence - C.trachomatis:182 L.major:182

O84734              	100.00%		Q4QH70              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for Q4QH70 as seed ortholog is 100%.

Group of orthologs #60. Best score 180 bits
Score difference with first non-orthologous sequence - C.trachomatis:180 L.major:180

O84812              	100.00%		Q4Q5U8              	100.00%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for Q4Q5U8 as seed ortholog is 100%.

Group of orthologs #61. Best score 177 bits
Score difference with first non-orthologous sequence - C.trachomatis:177 L.major:177

O84608              	100.00%		Q4QBH2              	100.00%
                    	       		Q4QF76              	13.93%
                    	       		Q4QF68              	13.21%
                    	       		Q4QF80              	13.21%
                    	       		Q4QF74              	12.50%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for Q4QBH2 as seed ortholog is 100%.

Group of orthologs #62. Best score 177 bits
Score difference with first non-orthologous sequence - C.trachomatis:177 L.major:76

O84028              	100.00%		Q4QAR0              	100.00%
Bootstrap support for O84028 as seed ortholog is 100%.
Bootstrap support for Q4QAR0 as seed ortholog is 98%.

Group of orthologs #63. Best score 165 bits
Score difference with first non-orthologous sequence - C.trachomatis:165 L.major:165

O84266              	100.00%		Q4Q4W3              	100.00%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for Q4Q4W3 as seed ortholog is 100%.

Group of orthologs #64. Best score 164 bits
Score difference with first non-orthologous sequence - C.trachomatis:164 L.major:164

O84402              	100.00%		Q4Q8N7              	100.00%
                    	       		Q4Q8M6              	5.43%
Bootstrap support for O84402 as seed ortholog is 100%.
Bootstrap support for Q4Q8N7 as seed ortholog is 100%.

Group of orthologs #65. Best score 161 bits
Score difference with first non-orthologous sequence - C.trachomatis:161 L.major:161

O84613              	100.00%		Q4QDZ4              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for Q4QDZ4 as seed ortholog is 100%.

Group of orthologs #66. Best score 157 bits
Score difference with first non-orthologous sequence - C.trachomatis:157 L.major:157

O84035              	100.00%		Q4QCD2              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for Q4QCD2 as seed ortholog is 100%.

Group of orthologs #67. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 L.major:51

O84649              	100.00%		Q4QCK3              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for Q4QCK3 as seed ortholog is 63%.
Alternative seed ortholog is Q4Q199 (51 bits away from this cluster)

Group of orthologs #68. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 L.major:154

O84196              	100.00%		Q4Q7B4              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for Q4Q7B4 as seed ortholog is 100%.

Group of orthologs #69. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 L.major:24

O84676              	100.00%		Q4Q9X5              	100.00%
O84722              	13.71%		Q4Q9X6              	100.00%
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for Q4Q9X5 as seed ortholog is 74%.
Alternative seed ortholog is Q4QJF1 (24 bits away from this cluster)
Bootstrap support for Q4Q9X6 as seed ortholog is 75%.

Group of orthologs #70. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:150 L.major:56

O84247              	100.00%		Q4QDQ1              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for Q4QDQ1 as seed ortholog is 94%.

Group of orthologs #71. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 L.major:150

O84154              	100.00%		Q4QH76              	100.00%
Bootstrap support for O84154 as seed ortholog is 97%.
Bootstrap support for Q4QH76 as seed ortholog is 100%.

Group of orthologs #72. Best score 146 bits
Score difference with first non-orthologous sequence - C.trachomatis:146 L.major:146

O84546              	100.00%		Q4Q7R2              	100.00%
                    	       		Q4QCA9              	22.96%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for Q4Q7R2 as seed ortholog is 100%.

Group of orthologs #73. Best score 143 bits
Score difference with first non-orthologous sequence - C.trachomatis:143 L.major:143

O84026              	100.00%		Q4Q9U6              	100.00%
O84465              	5.87%		
Bootstrap support for O84026 as seed ortholog is 100%.
Bootstrap support for Q4Q9U6 as seed ortholog is 100%.

Group of orthologs #74. Best score 143 bits
Score difference with first non-orthologous sequence - C.trachomatis:143 L.major:143

O84719              	100.00%		Q4QHG4              	100.00%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for Q4QHG4 as seed ortholog is 100%.

Group of orthologs #75. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 L.major:141

O84109              	100.00%		Q4Q851              	100.00%
Bootstrap support for O84109 as seed ortholog is 100%.
Bootstrap support for Q4Q851 as seed ortholog is 100%.

Group of orthologs #76. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 L.major:141

O84614              	100.00%		Q4QHW5              	100.00%
Bootstrap support for O84614 as seed ortholog is 100%.
Bootstrap support for Q4QHW5 as seed ortholog is 100%.

Group of orthologs #77. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 L.major:138

O84296              	100.00%		Q4QIE0              	100.00%
                    	       		Q4Q512              	10.51%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for Q4QIE0 as seed ortholog is 100%.

Group of orthologs #78. Best score 130 bits
Score difference with first non-orthologous sequence - C.trachomatis:130 L.major:130

O84835              	100.00%		Q4QBL8              	100.00%
                    	       		E9ADI5              	88.75%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for Q4QBL8 as seed ortholog is 100%.

Group of orthologs #79. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 L.major:57

O84732              	100.00%		Q95Z93              	100.00%
                    	       		E9AF31              	12.54%
                    	       		Q4QED4              	9.39%
                    	       		Q4QIM6              	7.74%
                    	       		Q4QIM8              	7.42%
                    	       		Q4Q490              	6.78%
                    	       		Q4QDN7              	6.46%
                    	       		Q4QDN8              	6.46%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for Q95Z93 as seed ortholog is 75%.

Group of orthologs #80. Best score 127 bits
Score difference with first non-orthologous sequence - C.trachomatis:20 L.major:127

O84260              	100.00%		E9AD84              	100.00%
                    	       		E9AFA8              	6.40%
Bootstrap support for O84260 as seed ortholog is 28%.
Alternative seed ortholog is O84693 (20 bits away from this cluster)
Bootstrap support for E9AD84 as seed ortholog is 100%.

Group of orthologs #81. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:126 L.major:68

O84781              	100.00%		Q4QDB5              	100.00%
                    	       		Q4QDB7              	63.33%
                    	       		Q4QDB6              	62.21%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for Q4QDB5 as seed ortholog is 94%.

Group of orthologs #82. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:126 L.major:126

O84289              	100.00%		Q4QIT1              	100.00%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for Q4QIT1 as seed ortholog is 100%.

Group of orthologs #83. Best score 125 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 L.major:125

O84123              	100.00%		Q4Q431              	100.00%
                    	       		E9AFJ2              	19.40%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for Q4Q431 as seed ortholog is 100%.

Group of orthologs #84. Best score 125 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 L.major:125

O84709              	100.00%		Q4Q9G4              	100.00%
Bootstrap support for O84709 as seed ortholog is 100%.
Bootstrap support for Q4Q9G4 as seed ortholog is 100%.

Group of orthologs #85. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 L.major:2

O84130              	100.00%		Q4Q1U0              	100.00%
                    	       		Q4QC71              	6.27%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for Q4Q1U0 as seed ortholog is 45%.
Alternative seed ortholog is Q4Q3J7 (2 bits away from this cluster)

Group of orthologs #86. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 L.major:27

P38004              	100.00%		E9ACW4              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for E9ACW4 as seed ortholog is 81%.

Group of orthologs #87. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 L.major:110

O84547              	100.00%		Q4Q7P3              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for Q4Q7P3 as seed ortholog is 100%.

Group of orthologs #88. Best score 109 bits
Score difference with first non-orthologous sequence - C.trachomatis:109 L.major:109

O84668              	100.00%		Q4QF53              	100.00%
O84193              	13.67%		Q4Q836              	21.43%
Bootstrap support for O84668 as seed ortholog is 100%.
Bootstrap support for Q4QF53 as seed ortholog is 100%.

Group of orthologs #89. Best score 109 bits
Score difference with first non-orthologous sequence - C.trachomatis:109 L.major:109

O84033              	100.00%		Q4Q481              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for Q4Q481 as seed ortholog is 100%.

Group of orthologs #90. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 L.major:106

O84720              	100.00%		Q4Q3T5              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for Q4Q3T5 as seed ortholog is 100%.

Group of orthologs #91. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 L.major:99

O84200              	100.00%		Q4Q6Q4              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for Q4Q6Q4 as seed ortholog is 100%.

Group of orthologs #92. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 L.major:29

O84530              	100.00%		Q4FWX5              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for Q4FWX5 as seed ortholog is 81%.

Group of orthologs #93. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 L.major:17

O84358              	100.00%		Q4Q7U7              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for Q4Q7U7 as seed ortholog is 77%.

Group of orthologs #94. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 L.major:95

O84456              	100.00%		Q4QGF2              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for Q4QGF2 as seed ortholog is 100%.

Group of orthologs #95. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 L.major:91

O84843              	100.00%		Q4Q5J5              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for Q4Q5J5 as seed ortholog is 100%.

Group of orthologs #96. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 L.major:3

O84665              	100.00%		Q4Q7F2              	100.00%
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for Q4Q7F2 as seed ortholog is 51%.
Alternative seed ortholog is Q4Q7A0 (3 bits away from this cluster)

Group of orthologs #97. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 L.major:4

O84469              	100.00%		Q4Q7E9              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for Q4Q7E9 as seed ortholog is 59%.
Alternative seed ortholog is Q4QDB3 (4 bits away from this cluster)

Group of orthologs #98. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 L.major:84

O84442              	100.00%		Q4Q2S8              	100.00%
                    	       		Q4Q8E2              	7.26%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for Q4Q2S8 as seed ortholog is 100%.

Group of orthologs #99. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 L.major:84

O84307              	100.00%		Q4Q5J0              	100.00%
                    	       		Q4QAY7              	35.03%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for Q4Q5J0 as seed ortholog is 100%.

Group of orthologs #100. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 L.major:80

O84822              	100.00%		Q4QIK7              	100.00%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for Q4QIK7 as seed ortholog is 100%.

Group of orthologs #101. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 L.major:79

O84435              	100.00%		Q4Q0M6              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for Q4Q0M6 as seed ortholog is 100%.

Group of orthologs #102. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 L.major:79

O84032              	100.00%		Q4QGE9              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for Q4QGE9 as seed ortholog is 100%.

Group of orthologs #103. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 L.major:78

P0CD81              	100.00%		E9AFK3              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for E9AFK3 as seed ortholog is 100%.

Group of orthologs #104. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 L.major:76

O84578              	100.00%		E9AF59              	100.00%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for E9AF59 as seed ortholog is 100%.

Group of orthologs #105. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 L.major:76

O84686              	100.00%		Q4FXY8              	100.00%
Bootstrap support for O84686 as seed ortholog is 100%.
Bootstrap support for Q4FXY8 as seed ortholog is 100%.

Group of orthologs #106. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 L.major:74

O84139              	100.00%		Q4Q859              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for Q4Q859 as seed ortholog is 100%.

Group of orthologs #107. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 L.major:72

O84703              	100.00%		Q4QI30              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for Q4QI30 as seed ortholog is 100%.

Group of orthologs #108. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 L.major:71

O84338              	100.00%		E9AD32              	100.00%
                    	       		Q4Q732              	18.45%
                    	       		E9AFE9              	17.19%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for E9AD32 as seed ortholog is 100%.

Group of orthologs #109. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 L.major:71

P36431              	100.00%		Q4Q131              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for Q4Q131 as seed ortholog is 100%.

Group of orthologs #110. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 L.major:69

O84492              	100.00%		Q4QE43              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for Q4QE43 as seed ortholog is 100%.

Group of orthologs #111. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 L.major:67

O84189              	100.00%		Q4Q8S1              	100.00%
Bootstrap support for O84189 as seed ortholog is 100%.
Bootstrap support for Q4Q8S1 as seed ortholog is 100%.

Group of orthologs #112. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 L.major:67

O84782              	100.00%		Q6XFB3              	100.00%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for Q6XFB3 as seed ortholog is 100%.

Group of orthologs #113. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 L.major:65

P0A4C8              	100.00%		Q4Q5P0              	100.00%
                    	       		Q4QDL5              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for Q4Q5P0 as seed ortholog is 100%.
Bootstrap support for Q4QDL5 as seed ortholog is 100%.

Group of orthologs #114. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 L.major:65

P0CE03              	100.00%		Q4Q8H1              	100.00%
                    	       		Q4Q6S9              	66.37%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for Q4Q8H1 as seed ortholog is 100%.

Group of orthologs #115. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 L.major:65

P0C0Z8              	100.00%		Q4Q9D0              	100.00%
                    	       		Q4Q9D2              	98.45%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for Q4Q9D0 as seed ortholog is 100%.

Group of orthologs #116. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 L.major:65

O84353              	100.00%		Q4Q5H9              	100.00%
Bootstrap support for O84353 as seed ortholog is 100%.
Bootstrap support for Q4Q5H9 as seed ortholog is 100%.

Group of orthologs #117. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 L.major:64

O84284              	100.00%		E9AFU9              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for E9AFU9 as seed ortholog is 100%.

Group of orthologs #118. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 L.major:19

O84689              	100.00%		Q4Q1J3              	100.00%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for Q4Q1J3 as seed ortholog is 72%.
Alternative seed ortholog is Q4Q271 (19 bits away from this cluster)

Group of orthologs #119. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 L.major:59

O84258              	100.00%		Q4Q2T0              	100.00%
                    	       		Q4QE29              	16.53%
                    	       		Q4QE28              	14.21%
Bootstrap support for O84258 as seed ortholog is 100%.
Bootstrap support for Q4Q2T0 as seed ortholog is 100%.

Group of orthologs #120. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 L.major:59

O84633              	100.00%		Q4QF82              	100.00%
Bootstrap support for O84633 as seed ortholog is 100%.
Bootstrap support for Q4QF82 as seed ortholog is 100%.

Group of orthologs #121. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 L.major:56

O84599              	100.00%		E9AD77              	100.00%
                    	       		Q4QGV4              	12.61%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for E9AD77 as seed ortholog is 100%.

Group of orthologs #122. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 L.major:56

P0CD80              	100.00%		O61128              	100.00%
                    	       		O61127              	42.51%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for O61128 as seed ortholog is 100%.

Group of orthologs #123. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 L.major:56

P36424              	100.00%		Q4Q7N4              	100.00%
                    	       		Q4Q7N3              	11.85%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for Q4Q7N4 as seed ortholog is 100%.

Group of orthologs #124. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 L.major:56

O84395              	100.00%		Q4Q1I5              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for Q4Q1I5 as seed ortholog is 100%.

Group of orthologs #125. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 L.major:55

O84390              	100.00%		Q4QFW1              	100.00%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for Q4QFW1 as seed ortholog is 100%.

Group of orthologs #126. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 L.major:51

P0CE04              	100.00%		Q4Q1Y2              	100.00%
                    	       		Q4Q1Y3              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for Q4Q1Y2 as seed ortholog is 100%.
Bootstrap support for Q4Q1Y3 as seed ortholog is 100%.

Group of orthologs #127. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 L.major:50

O84496              	100.00%		Q4QBG5              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for Q4QBG5 as seed ortholog is 100%.

Group of orthologs #128. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 L.major:50

P66370              	100.00%		Q4QC89              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for Q4QC89 as seed ortholog is 100%.

Group of orthologs #129. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 L.major:48

O84544              	100.00%		E9AC16              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for E9AC16 as seed ortholog is 100%.

Group of orthologs #130. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 L.major:48

O84127              	100.00%		Q4Q2H6              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for Q4Q2H6 as seed ortholog is 100%.

Group of orthologs #131. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 L.major:48

O84527              	100.00%		Q4Q4A0              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for Q4Q4A0 as seed ortholog is 100%.

Group of orthologs #132. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 L.major:45

O84219              	100.00%		Q4Q0E8              	100.00%
Bootstrap support for O84219 as seed ortholog is 100%.
Bootstrap support for Q4Q0E8 as seed ortholog is 100%.

Group of orthologs #133. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 L.major:45

O84459              	100.00%		Q4Q582              	100.00%
Bootstrap support for O84459 as seed ortholog is 100%.
Bootstrap support for Q4Q582 as seed ortholog is 100%.

Group of orthologs #134. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 L.major:45

O84011              	100.00%		Q8ISS8              	100.00%
Bootstrap support for O84011 as seed ortholog is 100%.
Bootstrap support for Q8ISS8 as seed ortholog is 100%.

Group of orthologs #135. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 L.major:45

O84851              	100.00%		Q4QHE1              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for Q4QHE1 as seed ortholog is 100%.

Group of orthologs #136. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 L.major:44

O84464              	100.00%		E9ACG0              	100.00%
Bootstrap support for O84464 as seed ortholog is 100%.
Bootstrap support for E9ACG0 as seed ortholog is 100%.

Group of orthologs #137. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 L.major:44

O84191              	100.00%		Q4QHL4              	100.00%
Bootstrap support for O84191 as seed ortholog is 100%.
Bootstrap support for Q4QHL4 as seed ortholog is 100%.

Group of orthologs #138. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 L.major:43

P0CE05              	100.00%		Q4QCN7              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for Q4QCN7 as seed ortholog is 100%.

Group of orthologs #139. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 L.major:43

P0CE06              	100.00%		Q868B1              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for Q868B1 as seed ortholog is 100%.

Group of orthologs #140. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 L.major:42

P0CE02              	100.00%		Q4Q8G4              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for Q4Q8G4 as seed ortholog is 100%.

Group of orthologs #141. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 L.major:40

P0CD83              	100.00%		Q4QFP0              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for Q4QFP0 as seed ortholog is 100%.