###################################
192 groups of orthologs
194 in-paralogs from C.trachomatis
372 in-paralogs from G.gallus
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 929 bits
Score difference with first non-orthologous sequence - C.trachomatis:762 G.gallus:646

O84022              	100.00%		E1BQH2              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for E1BQH2 as seed ortholog is 100%.

Group of orthologs #2. Best score 852 bits
Score difference with first non-orthologous sequence - C.trachomatis:852 G.gallus:852

O84250              	100.00%		F1NAD9              	100.00%
                    	       		F1P0S8              	63.36%
Bootstrap support for O84250 as seed ortholog is 100%.
Bootstrap support for F1NAD9 as seed ortholog is 100%.

Group of orthologs #3. Best score 711 bits
Score difference with first non-orthologous sequence - C.trachomatis:711 G.gallus:150

P17821              	100.00%		Q5ZM98              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for Q5ZM98 as seed ortholog is 99%.

Group of orthologs #4. Best score 606 bits
Score difference with first non-orthologous sequence - C.trachomatis:606 G.gallus:453

O84067              	100.00%		F1NX95              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for F1NX95 as seed ortholog is 100%.

Group of orthologs #5. Best score 603 bits
Score difference with first non-orthologous sequence - C.trachomatis:603 G.gallus:603

O84716              	100.00%		P05153              	100.00%
                    	       		P21642              	100.00%
Bootstrap support for O84716 as seed ortholog is 100%.
Bootstrap support for P05153 as seed ortholog is 100%.
Bootstrap support for P21642 as seed ortholog is 100%.

Group of orthologs #6. Best score 590 bits
Score difference with first non-orthologous sequence - C.trachomatis:590 G.gallus:134

O84348              	100.00%		F1NNI2              	100.00%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for F1NNI2 as seed ortholog is 99%.

Group of orthologs #7. Best score 554 bits
Score difference with first non-orthologous sequence - C.trachomatis:359 G.gallus:476

P0C0Z7              	100.00%		Q5ZL72              	100.00%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for Q5ZL72 as seed ortholog is 100%.

Group of orthologs #8. Best score 523 bits
Score difference with first non-orthologous sequence - C.trachomatis:523 G.gallus:36

O84444              	100.00%		F1P0J0              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for F1P0J0 as seed ortholog is 74%.
Alternative seed ortholog is E1C430 (36 bits away from this cluster)

Group of orthologs #9. Best score 503 bits
Score difference with first non-orthologous sequence - C.trachomatis:503 G.gallus:503

O84057              	100.00%		E1BTL0              	100.00%
                    	       		E1C4Z4              	28.88%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for E1BTL0 as seed ortholog is 100%.

Group of orthologs #10. Best score 490 bits
Score difference with first non-orthologous sequence - C.trachomatis:490 G.gallus:490

O84066              	100.00%		Q5ZIZ0              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for Q5ZIZ0 as seed ortholog is 100%.

Group of orthologs #11. Best score 486 bits
Score difference with first non-orthologous sequence - C.trachomatis:486 G.gallus:486

O84585              	100.00%		F1P372              	100.00%
                    	       		E1BY56              	66.81%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for F1P372 as seed ortholog is 100%.

Group of orthologs #12. Best score 482 bits
Score difference with first non-orthologous sequence - C.trachomatis:482 G.gallus:430

O84863              	100.00%		Q5ZLD1              	100.00%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for Q5ZLD1 as seed ortholog is 100%.

Group of orthologs #13. Best score 461 bits
Score difference with first non-orthologous sequence - C.trachomatis:461 G.gallus:461

O84834              	100.00%		E1C4Q0              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for E1C4Q0 as seed ortholog is 100%.

Group of orthologs #14. Best score 458 bits
Score difference with first non-orthologous sequence - C.trachomatis:458 G.gallus:458

O84754              	100.00%		F1P5J5              	100.00%
                    	       		F1NC50              	28.20%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for F1P5J5 as seed ortholog is 100%.

Group of orthologs #15. Best score 458 bits
Score difference with first non-orthologous sequence - C.trachomatis:458 G.gallus:458

P0CD73              	100.00%		F1NVJ9              	100.00%
Bootstrap support for P0CD73 as seed ortholog is 100%.
Bootstrap support for F1NVJ9 as seed ortholog is 100%.

Group of orthologs #16. Best score 454 bits
Score difference with first non-orthologous sequence - C.trachomatis:454 G.gallus:243

O84460              	100.00%		Q5ZM11              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for Q5ZM11 as seed ortholog is 100%.

Group of orthologs #17. Best score 453 bits
Score difference with first non-orthologous sequence - C.trachomatis:453 G.gallus:20

O84848              	100.00%		E1BZ74              	100.00%
                    	       		F1NXP0              	7.44%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for E1BZ74 as seed ortholog is 65%.
Alternative seed ortholog is F1P519 (20 bits away from this cluster)

Group of orthologs #18. Best score 444 bits
Score difference with first non-orthologous sequence - C.trachomatis:329 G.gallus:321

O84211              	100.00%		E1BXI7              	100.00%
Bootstrap support for O84211 as seed ortholog is 100%.
Bootstrap support for E1BXI7 as seed ortholog is 100%.

Group of orthologs #19. Best score 421 bits
Score difference with first non-orthologous sequence - C.trachomatis:421 G.gallus:421

O84126              	100.00%		F1P0M2              	100.00%
                    	       		F1NYK3              	7.87%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for F1P0M2 as seed ortholog is 100%.

Group of orthologs #20. Best score 417 bits
Score difference with first non-orthologous sequence - C.trachomatis:417 G.gallus:417

Q59321              	100.00%		Q5F3Z1              	100.00%
                    	       		E1C458              	33.63%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for Q5F3Z1 as seed ortholog is 100%.

Group of orthologs #21. Best score 387 bits
Score difference with first non-orthologous sequence - C.trachomatis:387 G.gallus:387

O84310              	100.00%		Q90647              	100.00%
                    	       		F1NBW2              	99.05%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for Q90647 as seed ortholog is 100%.

Group of orthologs #22. Best score 381 bits
Score difference with first non-orthologous sequence - C.trachomatis:381 G.gallus:381

O84849              	100.00%		F1NU18              	100.00%
Bootstrap support for O84849 as seed ortholog is 100%.
Bootstrap support for F1NU18 as seed ortholog is 100%.

Group of orthologs #23. Best score 378 bits
Score difference with first non-orthologous sequence - C.trachomatis:378 G.gallus:275

O84591              	100.00%		O57391              	100.00%
                    	       		P51913              	79.75%
                    	       		P07322              	68.80%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for O57391 as seed ortholog is 100%.

Group of orthologs #24. Best score 375 bits
Score difference with first non-orthologous sequence - C.trachomatis:375 G.gallus:237

O84098              	100.00%		E1BZP9              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for E1BZP9 as seed ortholog is 99%.

Group of orthologs #25. Best score 369 bits
Score difference with first non-orthologous sequence - C.trachomatis:369 G.gallus:369

O84831              	100.00%		F1P2D3              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for F1P2D3 as seed ortholog is 100%.

Group of orthologs #26. Best score 364 bits
Score difference with first non-orthologous sequence - C.trachomatis:364 G.gallus:196

P0CD71              	100.00%		P84172              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for P84172 as seed ortholog is 100%.

Group of orthologs #27. Best score 363 bits
Score difference with first non-orthologous sequence - C.trachomatis:363 G.gallus:363

P0CE13              	100.00%		P00356              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for P00356 as seed ortholog is 100%.

Group of orthologs #28. Best score 338 bits
Score difference with first non-orthologous sequence - C.trachomatis:338 G.gallus:207

O84006              	100.00%		F1NLA0              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for F1NLA0 as seed ortholog is 99%.

Group of orthologs #29. Best score 337 bits
Score difference with first non-orthologous sequence - C.trachomatis:337 G.gallus:337

O84829              	100.00%		Q5ZL83              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for Q5ZL83 as seed ortholog is 100%.

Group of orthologs #30. Best score 317 bits
Score difference with first non-orthologous sequence - C.trachomatis:317 G.gallus:164

O84546              	100.00%		F1NTB0              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for F1NTB0 as seed ortholog is 99%.

Group of orthologs #31. Best score 316 bits
Score difference with first non-orthologous sequence - C.trachomatis:316 G.gallus:316

P0CD78              	100.00%		F1NU17              	100.00%
                    	       		P51903              	99.42%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for F1NU17 as seed ortholog is 100%.

Group of orthologs #32. Best score 315 bits
Score difference with first non-orthologous sequence - C.trachomatis:315 G.gallus:151

O84561              	100.00%		Q5ZM32              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for Q5ZM32 as seed ortholog is 99%.

Group of orthologs #33. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 G.gallus:314

O84823              	100.00%		F1P1F9              	100.00%
                    	       		Q5ZIG5              	75.39%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for F1P1F9 as seed ortholog is 100%.

Group of orthologs #34. Best score 312 bits
Score difference with first non-orthologous sequence - C.trachomatis:312 G.gallus:312

P0CE09              	100.00%		F1P4F2              	100.00%
                    	       		E1BRJ4              	21.85%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for F1P4F2 as seed ortholog is 100%.

Group of orthologs #35. Best score 307 bits
Score difference with first non-orthologous sequence - C.trachomatis:307 G.gallus:102

O84248              	100.00%		F1N823              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for F1N823 as seed ortholog is 99%.

Group of orthologs #36. Best score 306 bits
Score difference with first non-orthologous sequence - C.trachomatis:306 G.gallus:232

O84786              	100.00%		F1NE72              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for F1NE72 as seed ortholog is 100%.

Group of orthologs #37. Best score 305 bits
Score difference with first non-orthologous sequence - C.trachomatis:305 G.gallus:305

P0CE21              	100.00%		F1NW43              	100.00%
                    	       		P00548              	93.09%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for F1NW43 as seed ortholog is 100%.

Group of orthologs #38. Best score 297 bits
Score difference with first non-orthologous sequence - C.trachomatis:297 G.gallus:297

O84775              	100.00%		E1BYY7              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for E1BYY7 as seed ortholog is 100%.

Group of orthologs #39. Best score 294 bits
Score difference with first non-orthologous sequence - C.trachomatis:294 G.gallus:294

O84451              	100.00%		Q5ZJ66              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for Q5ZJ66 as seed ortholog is 100%.

Group of orthologs #40. Best score 279 bits
Score difference with first non-orthologous sequence - C.trachomatis:107 G.gallus:156

O84249              	100.00%		E1C6N5              	100.00%
Bootstrap support for O84249 as seed ortholog is 99%.
Bootstrap support for E1C6N5 as seed ortholog is 99%.

Group of orthologs #41. Best score 279 bits
Score difference with first non-orthologous sequence - C.trachomatis:279 G.gallus:279

O84711              	100.00%		F1NA92              	100.00%
Bootstrap support for O84711 as seed ortholog is 100%.
Bootstrap support for F1NA92 as seed ortholog is 100%.

Group of orthologs #42. Best score 277 bits
Score difference with first non-orthologous sequence - C.trachomatis:277 G.gallus:277

O84698              	100.00%		E1C3W7              	100.00%
                    	       		F1P3I3              	11.59%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for E1C3W7 as seed ortholog is 100%.

Group of orthologs #43. Best score 267 bits
Score difference with first non-orthologous sequence - C.trachomatis:267 G.gallus:267

O84828              	100.00%		Q5F3B9              	100.00%
                    	       		Q5ZL37              	22.05%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for Q5F3B9 as seed ortholog is 100%.

Group of orthologs #44. Best score 267 bits
Score difference with first non-orthologous sequence - C.trachomatis:267 G.gallus:267

O84316              	100.00%		Q5ZL98              	100.00%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for Q5ZL98 as seed ortholog is 100%.

Group of orthologs #45. Best score 265 bits
Score difference with first non-orthologous sequence - C.trachomatis:265 G.gallus:265

O84094              	100.00%		Q5ZM25              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for Q5ZM25 as seed ortholog is 100%.

Group of orthologs #46. Best score 259 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 G.gallus:259

O84026              	100.00%		F1NW58              	100.00%
                    	       		E1BXF8              	13.20%
Bootstrap support for O84026 as seed ortholog is 96%.
Bootstrap support for F1NW58 as seed ortholog is 100%.

Group of orthologs #47. Best score 259 bits
Score difference with first non-orthologous sequence - C.trachomatis:259 G.gallus:259

O84642              	100.00%		P00508              	100.00%
                    	       		P00504              	22.20%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for P00508 as seed ortholog is 100%.

Group of orthologs #48. Best score 259 bits
Score difference with first non-orthologous sequence - C.trachomatis:259 G.gallus:13

O84797              	100.00%		E1BWV7              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for E1BWV7 as seed ortholog is 57%.
Alternative seed ortholog is E1C1F8 (13 bits away from this cluster)

Group of orthologs #49. Best score 257 bits
Score difference with first non-orthologous sequence - C.trachomatis:257 G.gallus:257

O84360              	100.00%		F1NIQ1              	100.00%
Bootstrap support for O84360 as seed ortholog is 100%.
Bootstrap support for F1NIQ1 as seed ortholog is 100%.

Group of orthologs #50. Best score 256 bits
Score difference with first non-orthologous sequence - C.trachomatis:256 G.gallus:157

O84381              	100.00%		Q5ZME2              	100.00%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for Q5ZME2 as seed ortholog is 100%.

Group of orthologs #51. Best score 253 bits
Score difference with first non-orthologous sequence - C.trachomatis:253 G.gallus:253

P0CD72              	100.00%		F1NV05              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for F1NV05 as seed ortholog is 100%.

Group of orthologs #52. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:252 G.gallus:252

O84289              	100.00%		Q5ZKW0              	100.00%
                    	       		H9KZX8              	57.56%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for Q5ZKW0 as seed ortholog is 100%.

Group of orthologs #53. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 G.gallus:251

O84439              	100.00%		E1BS67              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for E1BS67 as seed ortholog is 100%.

Group of orthologs #54. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 G.gallus:178

O84309              	100.00%		F1NU21              	100.00%
                    	       		P49712              	82.16%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for F1NU21 as seed ortholog is 99%.

Group of orthologs #55. Best score 246 bits
Score difference with first non-orthologous sequence - C.trachomatis:246 G.gallus:158

O84352              	100.00%		F1P0V5              	100.00%
                    	       		F1NIH9              	15.93%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for F1P0V5 as seed ortholog is 99%.

Group of orthologs #56. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 G.gallus:244

O84787              	100.00%		Q5F408              	100.00%
                    	       		F1P2P3              	7.38%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for Q5F408 as seed ortholog is 100%.

Group of orthologs #57. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 G.gallus:244

P36431              	100.00%		E1BZP0              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for E1BZP0 as seed ortholog is 100%.

Group of orthologs #58. Best score 243 bits
Score difference with first non-orthologous sequence - C.trachomatis:243 G.gallus:124

O84548              	100.00%		F1NTH9              	100.00%
Bootstrap support for O84548 as seed ortholog is 100%.
Bootstrap support for F1NTH9 as seed ortholog is 99%.

Group of orthologs #59. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 G.gallus:122

O84058              	100.00%		E1C7I0              	100.00%
Bootstrap support for O84058 as seed ortholog is 99%.
Bootstrap support for E1C7I0 as seed ortholog is 99%.

Group of orthologs #60. Best score 237 bits
Score difference with first non-orthologous sequence - C.trachomatis:237 G.gallus:59

O84423              	100.00%		F1NVX4              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for F1NVX4 as seed ortholog is 77%.

Group of orthologs #61. Best score 229 bits
Score difference with first non-orthologous sequence - C.trachomatis:229 G.gallus:229

O84296              	100.00%		F1NT19              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for F1NT19 as seed ortholog is 100%.

Group of orthologs #62. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:225 G.gallus:225

O84081              	100.00%		Q5ZKA5              	100.00%
                    	       		F1NJT7              	51.59%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for Q5ZKA5 as seed ortholog is 100%.

Group of orthologs #63. Best score 224 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 G.gallus:224

O84406              	100.00%		E1C8G2              	100.00%
                    	       		E1C7B5              	62.44%
                    	       		E1C4F3              	36.96%
                    	       		E1C1P8              	35.14%
                    	       		F1N9I8              	34.30%
                    	       		F1NL65              	32.13%
                    	       		E1BRV6              	22.95%
Bootstrap support for O84406 as seed ortholog is 99%.
Bootstrap support for E1C8G2 as seed ortholog is 100%.

Group of orthologs #64. Best score 224 bits
Score difference with first non-orthologous sequence - C.trachomatis:224 G.gallus:76

O84049              	100.00%		F1NHL4              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for F1NHL4 as seed ortholog is 95%.

Group of orthologs #65. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:223 G.gallus:223

O84562              	100.00%		F1NEN8              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for F1NEN8 as seed ortholog is 100%.

Group of orthologs #66. Best score 222 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 G.gallus:222

O84028              	100.00%		E1C6G6              	100.00%
Bootstrap support for O84028 as seed ortholog is 99%.
Bootstrap support for E1C6G6 as seed ortholog is 100%.

Group of orthologs #67. Best score 221 bits
Score difference with first non-orthologous sequence - C.trachomatis:221 G.gallus:221

O84007              	100.00%		F1N9W3              	100.00%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for F1N9W3 as seed ortholog is 100%.

Group of orthologs #68. Best score 220 bits
Score difference with first non-orthologous sequence - C.trachomatis:220 G.gallus:46

O84345              	100.00%		F1NNE0              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for F1NNE0 as seed ortholog is 90%.

Group of orthologs #69. Best score 217 bits
Score difference with first non-orthologous sequence - C.trachomatis:217 G.gallus:43

O84266              	100.00%		F1NN89              	100.00%
                    	       		F1NDU4              	16.79%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for F1NN89 as seed ortholog is 87%.

Group of orthologs #70. Best score 213 bits
Score difference with first non-orthologous sequence - C.trachomatis:213 G.gallus:213

O84297              	100.00%		F1NIM3              	100.00%
                    	       		H9L0F8              	94.49%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for F1NIM3 as seed ortholog is 100%.

Group of orthologs #71. Best score 213 bits
Score difference with first non-orthologous sequence - C.trachomatis:213 G.gallus:213

O84315              	100.00%		H9L1C2              	100.00%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for H9L1C2 as seed ortholog is 100%.

Group of orthologs #72. Best score 212 bits
Score difference with first non-orthologous sequence - C.trachomatis:212 G.gallus:212

O84613              	100.00%		F1NJG2              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for F1NJG2 as seed ortholog is 100%.

Group of orthologs #73. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 G.gallus:205

O84812              	100.00%		F1NLC8              	100.00%
                    	       		E1BW46              	9.70%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for F1NLC8 as seed ortholog is 100%.

Group of orthologs #74. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 G.gallus:205

O84065              	100.00%		E1C266              	100.00%
Bootstrap support for O84065 as seed ortholog is 100%.
Bootstrap support for E1C266 as seed ortholog is 100%.

Group of orthologs #75. Best score 204 bits
Score difference with first non-orthologous sequence - C.trachomatis:204 G.gallus:204

O84638              	100.00%		F1NN39              	100.00%
Bootstrap support for O84638 as seed ortholog is 100%.
Bootstrap support for F1NN39 as seed ortholog is 100%.

Group of orthologs #76. Best score 203 bits
Score difference with first non-orthologous sequence - C.trachomatis:203 G.gallus:203

O84859              	100.00%		F1P5C7              	100.00%
                    	       		Q5ZIM5              	14.53%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for F1P5C7 as seed ortholog is 100%.

Group of orthologs #77. Best score 191 bits
Score difference with first non-orthologous sequence - C.trachomatis:191 G.gallus:191

O84247              	100.00%		Q5F426              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for Q5F426 as seed ortholog is 100%.

Group of orthologs #78. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 G.gallus:190

O84596              	100.00%		Q9YHT1              	100.00%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for Q9YHT1 as seed ortholog is 100%.

Group of orthologs #79. Best score 189 bits
Score difference with first non-orthologous sequence - C.trachomatis:189 G.gallus:189

O84874              	100.00%		E1C303              	100.00%
Bootstrap support for O84874 as seed ortholog is 100%.
Bootstrap support for E1C303 as seed ortholog is 100%.

Group of orthologs #80. Best score 185 bits
Score difference with first non-orthologous sequence - C.trachomatis:185 G.gallus:185

O84402              	100.00%		E1BXX6              	100.00%
                    	       		F1NKN5              	20.74%
                    	       		E1C372              	10.60%
Bootstrap support for O84402 as seed ortholog is 100%.
Bootstrap support for E1BXX6 as seed ortholog is 100%.

Group of orthologs #81. Best score 184 bits
Score difference with first non-orthologous sequence - C.trachomatis:184 G.gallus:57

P38004              	100.00%		F1NYK6              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for F1NYK6 as seed ortholog is 96%.

Group of orthologs #82. Best score 183 bits
Score difference with first non-orthologous sequence - C.trachomatis:183 G.gallus:183

O84332              	100.00%		P00940              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for P00940 as seed ortholog is 100%.

Group of orthologs #83. Best score 180 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 G.gallus:180

O84755              	100.00%		F1P1A5              	100.00%
Bootstrap support for O84755 as seed ortholog is 91%.
Bootstrap support for F1P1A5 as seed ortholog is 100%.

Group of orthologs #84. Best score 178 bits
Score difference with first non-orthologous sequence - C.trachomatis:178 G.gallus:95

O84608              	100.00%		E1BR10              	100.00%
                    	       		F1NNS8              	27.78%
                    	       		P0CB50              	25.73%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for E1BR10 as seed ortholog is 99%.

Group of orthologs #85. Best score 178 bits
Score difference with first non-orthologous sequence - C.trachomatis:178 G.gallus:178

P18584              	100.00%		F1P3D6              	100.00%
                    	       		F1ND77              	48.73%
                    	       		H9KZZ0              	7.60%
Bootstrap support for P18584 as seed ortholog is 100%.
Bootstrap support for F1P3D6 as seed ortholog is 100%.

Group of orthologs #86. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 G.gallus:173

O84188              	100.00%		F1P581              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for F1P581 as seed ortholog is 100%.

Group of orthologs #87. Best score 168 bits
Score difference with first non-orthologous sequence - C.trachomatis:168 G.gallus:33

O84676              	100.00%		Q5ZLC5              	100.00%
O84722              	11.82%		
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for Q5ZLC5 as seed ortholog is 77%.

Group of orthologs #88. Best score 166 bits
Score difference with first non-orthologous sequence - C.trachomatis:166 G.gallus:166

O84456              	100.00%		E1C3V5              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for E1C3V5 as seed ortholog is 100%.

Group of orthologs #89. Best score 162 bits
Score difference with first non-orthologous sequence - C.trachomatis:162 G.gallus:162

O84274              	100.00%		F1NEP7              	100.00%
Bootstrap support for O84274 as seed ortholog is 100%.
Bootstrap support for F1NEP7 as seed ortholog is 100%.

Group of orthologs #90. Best score 162 bits
Score difference with first non-orthologous sequence - C.trachomatis:162 G.gallus:162

O84632              	100.00%		F1P062              	100.00%
Bootstrap support for O84632 as seed ortholog is 100%.
Bootstrap support for F1P062 as seed ortholog is 100%.

Group of orthologs #91. Best score 161 bits
Score difference with first non-orthologous sequence - C.trachomatis:161 G.gallus:161

O84383              	100.00%		F1NEZ7              	100.00%
Bootstrap support for O84383 as seed ortholog is 100%.
Bootstrap support for F1NEZ7 as seed ortholog is 100%.

Group of orthologs #92. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 G.gallus:156

O84720              	100.00%		E1BZG2              	100.00%
                    	       		F1NFV9              	42.42%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for E1BZG2 as seed ortholog is 100%.

Group of orthologs #93. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 G.gallus:153

O84727              	100.00%		Q5ZHV4              	100.00%
                    	       		Q5ZLN1              	43.80%
Bootstrap support for O84727 as seed ortholog is 100%.
Bootstrap support for Q5ZHV4 as seed ortholog is 100%.

Group of orthologs #94. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:39 G.gallus:151

O84260              	100.00%		F1NNU3              	100.00%
Bootstrap support for O84260 as seed ortholog is 84%.
Bootstrap support for F1NNU3 as seed ortholog is 100%.

Group of orthologs #95. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 G.gallus:151

O84200              	100.00%		F1NZ71              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for F1NZ71 as seed ortholog is 100%.

Group of orthologs #96. Best score 148 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 G.gallus:148

O84123              	100.00%		F1NT24              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for F1NT24 as seed ortholog is 100%.

Group of orthologs #97. Best score 144 bits
Score difference with first non-orthologous sequence - C.trachomatis:144 G.gallus:144

O84035              	100.00%		F1P137              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for F1P137 as seed ortholog is 100%.

Group of orthologs #98. Best score 143 bits
Score difference with first non-orthologous sequence - C.trachomatis:143 G.gallus:143

O84732              	100.00%		Q9YGL9              	100.00%
                    	       		Q03669              	76.12%
                    	       		P13585              	75.71%
                    	       		E1BXM8              	17.31%
                    	       		F1NSW4              	15.30%
                    	       		P24797              	11.78%
                    	       		P24798              	11.78%
                    	       		P09572              	11.37%
                    	       		F1NZB7              	11.11%
                    	       		E1C785              	8.11%
                    	       		F1NFC7              	7.44%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for Q9YGL9 as seed ortholog is 100%.

Group of orthologs #99. Best score 142 bits
Score difference with first non-orthologous sequence - C.trachomatis:142 G.gallus:142

O84234              	100.00%		F1NG92              	100.00%
                    	       		F1NIV1              	40.55%
                    	       		E1C8K0              	34.71%
                    	       		E1BQT5              	34.62%
                    	       		F1N9W2              	34.28%
                    	       		E1BVF3              	33.33%
                    	       		E1BXE8              	32.73%
                    	       		F1NN76              	32.65%
                    	       		Q9DGN5              	31.96%
                    	       		F1P1E9              	31.87%
                    	       		E1BQT4              	31.62%
                    	       		F1NZX8              	30.84%
                    	       		F1NZ44              	30.50%
                    	       		E1BS25              	19.50%
                    	       		F1NLM8              	19.07%
                    	       		F1NPI1              	18.64%
                    	       		F1NPI2              	17.35%
                    	       		F1NS02              	15.46%
Bootstrap support for O84234 as seed ortholog is 100%.
Bootstrap support for F1NG92 as seed ortholog is 100%.

Group of orthologs #100. Best score 140 bits
Score difference with first non-orthologous sequence - C.trachomatis:140 G.gallus:140

O84752              	100.00%		F1NBI2              	100.00%
Bootstrap support for O84752 as seed ortholog is 100%.
Bootstrap support for F1NBI2 as seed ortholog is 100%.

Group of orthologs #101. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 G.gallus:138

O84835              	100.00%		F1P0T9              	100.00%
                    	       		E1BXP4              	79.70%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for F1P0T9 as seed ortholog is 100%.

Group of orthologs #102. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 G.gallus:138

O84478              	100.00%		E1BQW2              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for E1BQW2 as seed ortholog is 100%.

Group of orthologs #103. Best score 136 bits
Score difference with first non-orthologous sequence - C.trachomatis:136 G.gallus:136

O84589              	100.00%		E1BZY5              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for E1BZY5 as seed ortholog is 100%.

Group of orthologs #104. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 G.gallus:133

O84033              	100.00%		E1C038              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for E1C038 as seed ortholog is 100%.

Group of orthologs #105. Best score 131 bits
Score difference with first non-orthologous sequence - C.trachomatis:131 G.gallus:42

O84530              	100.00%		F1NY85              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for F1NY85 as seed ortholog is 90%.

Group of orthologs #106. Best score 128 bits
Score difference with first non-orthologous sequence - C.trachomatis:128 G.gallus:128

O84492              	100.00%		O42479              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for O42479 as seed ortholog is 100%.

Group of orthologs #107. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 G.gallus:123

O84649              	100.00%		F1P1F3              	100.00%
                    	       		E1BQG8              	13.04%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for F1P1F3 as seed ortholog is 100%.

Group of orthologs #108. Best score 121 bits
Score difference with first non-orthologous sequence - C.trachomatis:121 G.gallus:121

O84771              	100.00%		E1C6R1              	100.00%
Bootstrap support for O84771 as seed ortholog is 100%.
Bootstrap support for E1C6R1 as seed ortholog is 100%.

Group of orthologs #109. Best score 121 bits
Score difference with first non-orthologous sequence - C.trachomatis:121 G.gallus:121

O84241              	100.00%		F1NZA8              	100.00%
Bootstrap support for O84241 as seed ortholog is 100%.
Bootstrap support for F1NZA8 as seed ortholog is 100%.

Group of orthologs #110. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 G.gallus:45

O84508              	100.00%		O57535              	100.00%
                    	       		F1N910              	79.80%
                    	       		F1P3E1              	58.59%
                    	       		F1NG65              	7.07%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for O57535 as seed ortholog is 98%.

Group of orthologs #111. Best score 118 bits
Score difference with first non-orthologous sequence - C.trachomatis:118 G.gallus:51

O84469              	100.00%		E1BUI0              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for E1BUI0 as seed ortholog is 89%.

Group of orthologs #112. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 G.gallus:116

O84559              	100.00%		F1P0X4              	100.00%
Bootstrap support for O84559 as seed ortholog is 100%.
Bootstrap support for F1P0X4 as seed ortholog is 100%.

Group of orthologs #113. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 G.gallus:67

P66370              	100.00%		H9L236              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for H9L236 as seed ortholog is 99%.

Group of orthologs #114. Best score 113 bits
Score difference with first non-orthologous sequence - C.trachomatis:113 G.gallus:113

P55137              	100.00%		F1P0L5              	100.00%
                    	       		E1BRR1              	21.54%
Bootstrap support for P55137 as seed ortholog is 100%.
Bootstrap support for F1P0L5 as seed ortholog is 100%.

Group of orthologs #115. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 G.gallus:55

O84096              	100.00%		E1BRM1              	100.00%
Bootstrap support for O84096 as seed ortholog is 100%.
Bootstrap support for E1BRM1 as seed ortholog is 97%.

Group of orthologs #116. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 G.gallus:111

O84215              	100.00%		F1P520              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for F1P520 as seed ortholog is 100%.

Group of orthologs #117. Best score 109 bits
Score difference with first non-orthologous sequence - C.trachomatis:109 G.gallus:109

O84301              	100.00%		F1NKN8              	100.00%
Bootstrap support for O84301 as seed ortholog is 100%.
Bootstrap support for F1NKN8 as seed ortholog is 100%.

Group of orthologs #118. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 G.gallus:106

O84864              	100.00%		F1NDS6              	100.00%
                    	       		E1C3I4              	35.71%
                    	       		F1NFL0              	33.16%
                    	       		E1C2B7              	29.47%
                    	       		F1P0S1              	29.47%
                    	       		F1NKI6              	26.32%
                    	       		H9KYZ3              	26.17%
                    	       		F1NDF1              	18.27%
                    	       		E1BXQ9              	17.97%
Bootstrap support for O84864 as seed ortholog is 100%.
Bootstrap support for F1NDS6 as seed ortholog is 100%.

Group of orthologs #119. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 G.gallus:27

O84599              	100.00%		F1NM89              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for F1NM89 as seed ortholog is 76%.

Group of orthologs #120. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 G.gallus:105

O84374              	100.00%		F1NU75              	100.00%
Bootstrap support for O84374 as seed ortholog is 100%.
Bootstrap support for F1NU75 as seed ortholog is 100%.

Group of orthologs #121. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 G.gallus:101

O84391              	100.00%		H9L087              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for H9L087 as seed ortholog is 100%.

Group of orthologs #122. Best score 100 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 G.gallus:54

O84212              	100.00%		E1BRW0              	100.00%
                    	       		F1NQJ1              	6.06%
Bootstrap support for O84212 as seed ortholog is 100%.
Bootstrap support for E1BRW0 as seed ortholog is 92%.

Group of orthologs #123. Best score 100 bits
Score difference with first non-orthologous sequence - C.trachomatis:100 G.gallus:100

P0CE06              	100.00%		Q5ZMU0              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for Q5ZMU0 as seed ortholog is 100%.

Group of orthologs #124. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 G.gallus:98

O84390              	100.00%		Q9I882              	100.00%
                    	       		H9L3F3              	6.10%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for Q9I882 as seed ortholog is 100%.

Group of orthologs #125. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 G.gallus:97

O84782              	100.00%		F1NBE3              	100.00%
                    	       		P07997              	13.86%
                    	       		P18080              	12.97%
                    	       		F1NNL5              	12.45%
                    	       		F1NHR1              	11.30%
                    	       		E1BQI0              	6.29%
                    	       		E1C3L6              	5.65%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for F1NBE3 as seed ortholog is 100%.

Group of orthologs #126. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 G.gallus:2

O84358              	100.00%		E1BWX0              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for E1BWX0 as seed ortholog is 47%.
Alternative seed ortholog is E1C0U9 (2 bits away from this cluster)

Group of orthologs #127. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 G.gallus:96

O84851              	100.00%		F1P565              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for F1P565 as seed ortholog is 100%.

Group of orthologs #128. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 G.gallus:27

P0CE03              	100.00%		Q5ZL20              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for Q5ZL20 as seed ortholog is 94%.

Group of orthologs #129. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 G.gallus:94

O84719              	100.00%		F1P0W8              	100.00%
                    	       		F1NFY2              	69.01%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for F1P0W8 as seed ortholog is 100%.

Group of orthologs #130. Best score 92 bits
Score difference with first non-orthologous sequence - C.trachomatis:92 G.gallus:6

O84130              	100.00%		F1NJ73              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for F1NJ73 as seed ortholog is 54%.
Alternative seed ortholog is Q5ZKE7 (6 bits away from this cluster)

Group of orthologs #131. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 G.gallus:91

P0CD79              	100.00%		F1NIN3              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for F1NIN3 as seed ortholog is 100%.

Group of orthologs #132. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 G.gallus:88

O84338              	100.00%		F1NEW1              	100.00%
                    	       		P53033              	18.69%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for F1NEW1 as seed ortholog is 100%.

Group of orthologs #133. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 G.gallus:88

O84665              	100.00%		E1BYI6              	100.00%
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for E1BYI6 as seed ortholog is 100%.

Group of orthologs #134. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 G.gallus:88

O84535              	100.00%		F1NBQ0              	100.00%
Bootstrap support for O84535 as seed ortholog is 100%.
Bootstrap support for F1NBQ0 as seed ortholog is 100%.

Group of orthologs #135. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:21 G.gallus:88

O84154              	100.00%		F1NS76              	100.00%
Bootstrap support for O84154 as seed ortholog is 75%.
Bootstrap support for F1NS76 as seed ortholog is 100%.

Group of orthologs #136. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 G.gallus:86

O84036              	100.00%		E1C1Z0              	100.00%
Bootstrap support for O84036 as seed ortholog is 100%.
Bootstrap support for E1C1Z0 as seed ortholog is 100%.

Group of orthologs #137. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 G.gallus:46

O84294              	100.00%		Q5ZKJ3              	100.00%
Bootstrap support for O84294 as seed ortholog is 100%.
Bootstrap support for Q5ZKJ3 as seed ortholog is 98%.

Group of orthologs #138. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 G.gallus:86

O84435              	100.00%		Q5ZLL5              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for Q5ZLL5 as seed ortholog is 100%.

Group of orthologs #139. Best score 83 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 G.gallus:83

O84547              	100.00%		F1ND13              	100.00%
                    	       		F1NTT1              	73.49%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for F1ND13 as seed ortholog is 100%.

Group of orthologs #140. Best score 83 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 G.gallus:83

O84578              	100.00%		F1NIQ9              	100.00%
                    	       		F1NH26              	7.09%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for F1NIQ9 as seed ortholog is 100%.

Group of orthologs #141. Best score 83 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 G.gallus:83

O84499              	100.00%		F1ND04              	100.00%
Bootstrap support for O84499 as seed ortholog is 100%.
Bootstrap support for F1ND04 as seed ortholog is 100%.

Group of orthologs #142. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 G.gallus:82

O84595              	100.00%		Q9YHT2              	100.00%
Bootstrap support for O84595 as seed ortholog is 100%.
Bootstrap support for Q9YHT2 as seed ortholog is 100%.

Group of orthologs #143. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 G.gallus:81

O84611              	100.00%		F1NLH9              	100.00%
Bootstrap support for O84611 as seed ortholog is 100%.
Bootstrap support for F1NLH9 as seed ortholog is 100%.

Group of orthologs #144. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 G.gallus:81

O84468              	100.00%		F1NM25              	100.00%
Bootstrap support for O84468 as seed ortholog is 100%.
Bootstrap support for F1NM25 as seed ortholog is 100%.

Group of orthologs #145. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 G.gallus:78

O84139              	100.00%		F1NJF5              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for F1NJF5 as seed ortholog is 100%.

Group of orthologs #146. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 G.gallus:78

O84533              	100.00%		F1NVG6              	100.00%
Bootstrap support for O84533 as seed ortholog is 100%.
Bootstrap support for F1NVG6 as seed ortholog is 100%.

Group of orthologs #147. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 G.gallus:15

O84544              	100.00%		F1NEH7              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for F1NEH7 as seed ortholog is 80%.

Group of orthologs #148. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 G.gallus:76

P36424              	100.00%		Q5ZHV6              	100.00%
                    	       		F1NG73              	35.18%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for Q5ZHV6 as seed ortholog is 100%.

Group of orthologs #149. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 G.gallus:76

O84658              	100.00%		F1NHS6              	100.00%
Bootstrap support for O84658 as seed ortholog is 100%.
Bootstrap support for F1NHS6 as seed ortholog is 100%.

Group of orthologs #150. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 G.gallus:74

O84842              	100.00%		E1BRV2              	100.00%
Bootstrap support for O84842 as seed ortholog is 100%.
Bootstrap support for E1BRV2 as seed ortholog is 100%.

Group of orthologs #151. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 G.gallus:72

O84650              	100.00%		E1BWI8              	100.00%
                    	       		E1C4F6              	100.00%
                    	       		F1NHN2              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for E1BWI8 as seed ortholog is 100%.
Bootstrap support for E1C4F6 as seed ortholog is 100%.
Bootstrap support for F1NHN2 as seed ortholog is 100%.

Group of orthologs #152. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 G.gallus:72

O84792              	100.00%		E1BQP4              	100.00%
Bootstrap support for O84792 as seed ortholog is 100%.
Bootstrap support for E1BQP4 as seed ortholog is 100%.

Group of orthologs #153. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 G.gallus:72

O84027              	100.00%		E1BTM2              	100.00%
Bootstrap support for O84027 as seed ortholog is 100%.
Bootstrap support for E1BTM2 as seed ortholog is 100%.

Group of orthologs #154. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 G.gallus:71

O84366              	100.00%		E1C1D7              	100.00%
Bootstrap support for O84366 as seed ortholog is 100%.
Bootstrap support for E1C1D7 as seed ortholog is 100%.

Group of orthologs #155. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 G.gallus:21

O84781              	100.00%		F1P2G8              	100.00%
                    	       		Q5F420              	70.62%
                    	       		F1NNV2              	63.30%
                    	       		F1P451              	18.97%
                    	       		F1ND19              	18.46%
                    	       		Q5ZKR7              	7.99%
                    	       		F1NLD6              	7.25%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for F1P2G8 as seed ortholog is 70%.
Alternative seed ortholog is H9L008 (21 bits away from this cluster)

Group of orthologs #156. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 G.gallus:69

O84108              	100.00%		E1C0L7              	100.00%
Bootstrap support for O84108 as seed ortholog is 100%.
Bootstrap support for E1C0L7 as seed ortholog is 100%.

Group of orthologs #157. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 G.gallus:20

P0CD81              	100.00%		E1BY89              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for E1BY89 as seed ortholog is 81%.

Group of orthologs #158. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 G.gallus:67

O84557              	100.00%		F1NUQ8              	100.00%
                    	       		E1C522              	15.19%
Bootstrap support for O84557 as seed ortholog is 100%.
Bootstrap support for F1NUQ8 as seed ortholog is 100%.

Group of orthologs #159. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 G.gallus:67

O84284              	100.00%		P11183              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for P11183 as seed ortholog is 100%.

Group of orthologs #160. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 G.gallus:66

O84218              	100.00%		F1NEI2              	100.00%
                    	       		E1C734              	41.36%
                    	       		F1ND99              	41.06%
                    	       		F1NHE4              	40.85%
                    	       		F1NX29              	39.33%
Bootstrap support for O84218 as seed ortholog is 100%.
Bootstrap support for F1NEI2 as seed ortholog is 100%.

Group of orthologs #161. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 G.gallus:15

O84822              	100.00%		F1NM36              	100.00%
                    	       		F1NN63              	57.93%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for F1NM36 as seed ortholog is 62%.
Alternative seed ortholog is E1BQU2 (15 bits away from this cluster)

Group of orthologs #162. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 G.gallus:65

O84395              	100.00%		E1C934              	100.00%
                    	       		E1BXL5              	56.48%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for E1C934 as seed ortholog is 100%.

Group of orthologs #163. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 G.gallus:13

O84408              	100.00%		F1NG21              	100.00%
Bootstrap support for O84408 as seed ortholog is 100%.
Bootstrap support for F1NG21 as seed ortholog is 64%.
Alternative seed ortholog is F1NX84 (13 bits away from this cluster)

Group of orthologs #164. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 G.gallus:9

O84633              	100.00%		E1BZW8              	100.00%
Bootstrap support for O84633 as seed ortholog is 100%.
Bootstrap support for E1BZW8 as seed ortholog is 61%.
Alternative seed ortholog is F1NHT9 (9 bits away from this cluster)

Group of orthologs #165. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 G.gallus:64

O84128              	100.00%		F1NBU1              	100.00%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for F1NBU1 as seed ortholog is 100%.

Group of orthologs #166. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 G.gallus:64

P0C0Z8              	100.00%		O42283              	100.00%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for O42283 as seed ortholog is 100%.

Group of orthologs #167. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 G.gallus:63

O84703              	100.00%		F1NQP6              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for F1NQP6 as seed ortholog is 100%.

Group of orthologs #168. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 G.gallus:62

O84379              	100.00%		E1BT87              	100.00%
                    	       		F1NV11              	49.83%
                    	       		F1NEK3              	39.03%
                    	       		F1P296              	32.52%
Bootstrap support for O84379 as seed ortholog is 100%.
Bootstrap support for E1BT87 as seed ortholog is 100%.

Group of orthologs #169. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 G.gallus:61

P66123              	100.00%		F1NU81              	100.00%
Bootstrap support for P66123 as seed ortholog is 100%.
Bootstrap support for F1NU81 as seed ortholog is 100%.

Group of orthologs #170. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 G.gallus:60

O84680              	100.00%		Q5F3L5              	100.00%
                    	       		E1BSD5              	64.65%
                    	       		E1BWF3              	18.86%
                    	       		F1NI69              	18.18%
                    	       		F1P0K4              	11.95%
                    	       		F1N8L1              	11.95%
                    	       		E1C6W3              	11.78%
                    	       		F1P2Z4              	11.45%
                    	       		F1NSM5              	10.61%
                    	       		Q5ZMA7              	10.27%
                    	       		E1C6B4              	9.93%
                    	       		F1NA68              	9.76%
                    	       		P13863              	9.43%
                    	       		Q5ZJH6              	9.43%
                    	       		F1NMX4              	9.09%
                    	       		E1BVE1              	8.92%
                    	       		E1C8L2              	8.92%
                    	       		Q5ZIF0              	8.92%
                    	       		E1BYZ8              	8.75%
                    	       		F1NUM0              	8.75%
                    	       		F1NMJ3              	8.25%
                    	       		Q90891              	8.25%
                    	       		H9L141              	8.08%
                    	       		F1NJ64              	8.08%
                    	       		Q90771              	7.91%
                    	       		E1BRS0              	7.74%
                    	       		E1C503              	7.74%
                    	       		F1NFZ1              	7.74%
                    	       		H9L0H2              	7.58%
                    	       		E1BXA3              	7.24%
                    	       		E1C5K5              	7.24%
                    	       		F1NRC8              	7.24%
                    	       		E1C431              	7.24%
                    	       		E1BU17              	7.07%
                    	       		F1NGS8              	7.07%
                    	       		F1NJ01              	6.90%
                    	       		Q5ZKI0              	6.57%
                    	       		F1NUY2              	6.57%
                    	       		Q0GGW5              	6.57%
                    	       		E1BX19              	6.23%
                    	       		E1BZK5              	6.23%
                    	       		F1NMS0              	6.23%
                    	       		F1NHR7              	6.06%
                    	       		F1NKZ8              	6.06%
                    	       		F1P3T1              	5.72%
                    	       		F1NCQ3              	5.72%
                    	       		E1C2C8              	5.56%
                    	       		E1C1K7              	5.39%
                    	       		F1P5T2              	5.39%
                    	       		F1NUU2              	5.22%
                    	       		P42683              	5.22%
Bootstrap support for O84680 as seed ortholog is 100%.
Bootstrap support for Q5F3L5 as seed ortholog is 100%.

Group of orthologs #171. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 G.gallus:60

O84496              	100.00%		F1P4Z9              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for F1P4Z9 as seed ortholog is 100%.

Group of orthologs #172. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 G.gallus:59

P0CD84              	100.00%		F1NHT8              	100.00%
Bootstrap support for P0CD84 as seed ortholog is 100%.
Bootstrap support for F1NHT8 as seed ortholog is 100%.

Group of orthologs #173. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 G.gallus:58

O84840              	100.00%		F1P2M3              	100.00%
Bootstrap support for O84840 as seed ortholog is 100%.
Bootstrap support for F1P2M3 as seed ortholog is 100%.

Group of orthologs #174. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 G.gallus:56

O84527              	100.00%		F1N9X5              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for F1N9X5 as seed ortholog is 100%.

Group of orthologs #175. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 G.gallus:5

P0CE02              	100.00%		F1NH93              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for F1NH93 as seed ortholog is 56%.
Alternative seed ortholog is E1C1Y5 (5 bits away from this cluster)

Group of orthologs #176. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 G.gallus:55

O84774              	100.00%		F1NPS2              	100.00%
Bootstrap support for O84774 as seed ortholog is 100%.
Bootstrap support for F1NPS2 as seed ortholog is 100%.

Group of orthologs #177. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 G.gallus:55

O84221              	100.00%		F1NYJ7              	100.00%
Bootstrap support for O84221 as seed ortholog is 100%.
Bootstrap support for F1NYJ7 as seed ortholog is 100%.

Group of orthologs #178. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 G.gallus:55

P66480              	100.00%		P62846              	100.00%
Bootstrap support for P66480 as seed ortholog is 100%.
Bootstrap support for P62846 as seed ortholog is 100%.

Group of orthologs #179. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 G.gallus:54

P0A4C8              	100.00%		E1C4M0              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for E1C4M0 as seed ortholog is 100%.

Group of orthologs #180. Best score 53 bits
Score difference with first non-orthologous sequence - C.trachomatis:53 G.gallus:53

O84689              	100.00%		F1NQ36              	100.00%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for F1NQ36 as seed ortholog is 100%.

Group of orthologs #181. Best score 53 bits
Score difference with first non-orthologous sequence - C.trachomatis:53 G.gallus:53

P0CD83              	100.00%		H9KZA7              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for H9KZA7 as seed ortholog is 100%.

Group of orthologs #182. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 G.gallus:51

O84029              	100.00%		E1C907              	100.00%
Bootstrap support for O84029 as seed ortholog is 100%.
Bootstrap support for E1C907 as seed ortholog is 100%.

Group of orthologs #183. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 G.gallus:50

P0CD80              	100.00%		F1NI95              	100.00%
                    	       		P37383              	44.34%
                    	       		F1NUE9              	7.70%
                    	       		E1BVI8              	5.35%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for F1NI95 as seed ortholog is 100%.

Group of orthologs #184. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 G.gallus:50

O84803              	100.00%		F1NEV2              	100.00%
Bootstrap support for O84803 as seed ortholog is 100%.
Bootstrap support for F1NEV2 as seed ortholog is 100%.

Group of orthologs #185. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 G.gallus:49

O84618              	100.00%		P00378              	100.00%
Bootstrap support for O84618 as seed ortholog is 100%.
Bootstrap support for P00378 as seed ortholog is 100%.

Group of orthologs #186. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 G.gallus:46

O84459              	100.00%		E1C2V0              	100.00%
                    	       		F1NKP0              	45.77%
                    	       		E1BTF7              	25.81%
Bootstrap support for O84459 as seed ortholog is 100%.
Bootstrap support for E1C2V0 as seed ortholog is 100%.

Group of orthologs #187. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 G.gallus:43

O84261              	100.00%		F1P138              	100.00%
                    	       		E1BVR7              	12.82%
                    	       		E1BYA9              	11.97%
                    	       		E1BTL4              	11.83%
                    	       		E1BVM8              	9.30%
                    	       		F1NM90              	8.73%
                    	       		F1NRQ1              	7.04%
Bootstrap support for O84261 as seed ortholog is 100%.
Bootstrap support for F1P138 as seed ortholog is 100%.

Group of orthologs #188. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 G.gallus:43

P0CE05              	100.00%		F1N9W9              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for F1N9W9 as seed ortholog is 100%.

Group of orthologs #189. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 G.gallus:43

O84778              	100.00%		P00368              	100.00%
Bootstrap support for O84778 as seed ortholog is 100%.
Bootstrap support for P00368 as seed ortholog is 100%.

Group of orthologs #190. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 G.gallus:42

O84288              	100.00%		E1BT72              	100.00%
O84115              	32.78%		F1P4V8              	24.80%
                    	       		H9KYT1              	21.71%
                    	       		F1NLN4              	18.50%
                    	       		F1NYD5              	15.34%
                    	       		F1NG80              	13.89%
Bootstrap support for O84288 as seed ortholog is 100%.
Bootstrap support for E1BT72 as seed ortholog is 100%.

Group of orthologs #191. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 G.gallus:42

O84808              	100.00%		F1NCZ4              	100.00%
Bootstrap support for O84808 as seed ortholog is 100%.
Bootstrap support for F1NCZ4 as seed ortholog is 100%.

Group of orthologs #192. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 G.gallus:40

O84687              	100.00%		P50890              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for P50890 as seed ortholog is 100%.