###################################
104 groups of orthologs
109 in-paralogs from C.trachomatis
122 in-paralogs from E.cuniculi
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 788 bits
Score difference with first non-orthologous sequence - C.trachomatis:788 E.cuniculi:788

O84022              	100.00%		Q8SQV6              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for Q8SQV6 as seed ortholog is 100%.

Group of orthologs #2. Best score 566 bits
Score difference with first non-orthologous sequence - C.trachomatis:566 E.cuniculi:216

P17821              	100.00%		O96772              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for O96772 as seed ortholog is 100%.

Group of orthologs #3. Best score 515 bits
Score difference with first non-orthologous sequence - C.trachomatis:515 E.cuniculi:515

O84115              	100.00%		Q8SQU0              	100.00%
Bootstrap support for O84115 as seed ortholog is 100%.
Bootstrap support for Q8SQU0 as seed ortholog is 100%.

Group of orthologs #4. Best score 459 bits
Score difference with first non-orthologous sequence - C.trachomatis:459 E.cuniculi:459

O84585              	100.00%		Q8SRH2              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for Q8SRH2 as seed ortholog is 100%.

Group of orthologs #5. Best score 448 bits
Score difference with first non-orthologous sequence - C.trachomatis:448 E.cuniculi:373

O84304              	100.00%		Q8SS27              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for Q8SS27 as seed ortholog is 100%.

Group of orthologs #6. Best score 431 bits
Score difference with first non-orthologous sequence - C.trachomatis:431 E.cuniculi:431

O84834              	100.00%		Q8SR37              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for Q8SR37 as seed ortholog is 100%.

Group of orthologs #7. Best score 427 bits
Score difference with first non-orthologous sequence - C.trachomatis:427 E.cuniculi:427

O84755              	100.00%		Q8SVF0              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for Q8SVF0 as seed ortholog is 100%.

Group of orthologs #8. Best score 426 bits
Score difference with first non-orthologous sequence - C.trachomatis:426 E.cuniculi:426

O84754              	100.00%		Q8SSD4              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for Q8SSD4 as seed ortholog is 100%.

Group of orthologs #9. Best score 356 bits
Score difference with first non-orthologous sequence - C.trachomatis:221 E.cuniculi:356

O84310              	100.00%		Q8SQU9              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for Q8SQU9 as seed ortholog is 100%.

Group of orthologs #10. Best score 347 bits
Score difference with first non-orthologous sequence - C.trachomatis:347 E.cuniculi:347

Q59321              	100.00%		Q8SQI7              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for Q8SQI7 as seed ortholog is 100%.

Group of orthologs #11. Best score 306 bits
Score difference with first non-orthologous sequence - C.trachomatis:306 E.cuniculi:306

P0CE09              	100.00%		Q8SR75              	100.00%
                    	       		Q8SQY8              	20.29%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for Q8SR75 as seed ortholog is 100%.

Group of orthologs #12. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 E.cuniculi:304

O84316              	100.00%		Q8SSC4              	100.00%
                    	       		Q8SRM3              	13.23%
                    	       		Q8SS15              	8.54%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for Q8SSC4 as seed ortholog is 100%.

Group of orthologs #13. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 E.cuniculi:262

O84786              	100.00%		Q8SS56              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for Q8SS56 as seed ortholog is 100%.

Group of orthologs #14. Best score 283 bits
Score difference with first non-orthologous sequence - C.trachomatis:283 E.cuniculi:283

P0CE13              	100.00%		Q8SRJ8              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for Q8SRJ8 as seed ortholog is 100%.

Group of orthologs #15. Best score 278 bits
Score difference with first non-orthologous sequence - C.trachomatis:278 E.cuniculi:278

O84035              	100.00%		Q8SQW5              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for Q8SQW5 as seed ortholog is 100%.

Group of orthologs #16. Best score 276 bits
Score difference with first non-orthologous sequence - C.trachomatis:276 E.cuniculi:276

O84066              	100.00%		Q8SRX1              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for Q8SRX1 as seed ortholog is 100%.

Group of orthologs #17. Best score 261 bits
Score difference with first non-orthologous sequence - C.trachomatis:261 E.cuniculi:261

O84248              	100.00%		Q8SS26              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for Q8SS26 as seed ortholog is 100%.

Group of orthologs #18. Best score 261 bits
Score difference with first non-orthologous sequence - C.trachomatis:261 E.cuniculi:261

O84591              	100.00%		Q8SUA4              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for Q8SUA4 as seed ortholog is 100%.

Group of orthologs #19. Best score 255 bits
Score difference with first non-orthologous sequence - C.trachomatis:139 E.cuniculi:255

O84309              	100.00%		Q8SR34              	100.00%
Bootstrap support for O84309 as seed ortholog is 99%.
Bootstrap support for Q8SR34 as seed ortholog is 100%.

Group of orthologs #20. Best score 254 bits
Score difference with first non-orthologous sequence - C.trachomatis:254 E.cuniculi:254

P0CE21              	100.00%		Q8SQP0              	100.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for Q8SQP0 as seed ortholog is 100%.

Group of orthologs #21. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:252 E.cuniculi:252

O84787              	100.00%		Q8SRE0              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for Q8SRE0 as seed ortholog is 100%.

Group of orthologs #22. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 E.cuniculi:250

O84101              	100.00%		Q8SSF2              	100.00%
Bootstrap support for O84101 as seed ortholog is 100%.
Bootstrap support for Q8SSF2 as seed ortholog is 100%.

Group of orthologs #23. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:245 E.cuniculi:245

O84439              	100.00%		O62585              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for O62585 as seed ortholog is 100%.

Group of orthologs #24. Best score 236 bits
Score difference with first non-orthologous sequence - C.trachomatis:236 E.cuniculi:189

O84094              	100.00%		Q8SRN9              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for Q8SRN9 as seed ortholog is 100%.

Group of orthologs #25. Best score 235 bits
Score difference with first non-orthologous sequence - C.trachomatis:235 E.cuniculi:58

O84797              	100.00%		Q8SR47              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for Q8SR47 as seed ortholog is 85%.

Group of orthologs #26. Best score 234 bits
Score difference with first non-orthologous sequence - C.trachomatis:234 E.cuniculi:234

O84049              	100.00%		Q8SQZ7              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for Q8SQZ7 as seed ortholog is 100%.

Group of orthologs #27. Best score 221 bits
Score difference with first non-orthologous sequence - C.trachomatis:221 E.cuniculi:221

P0CD72              	100.00%		Q8SRY1              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for Q8SRY1 as seed ortholog is 100%.

Group of orthologs #28. Best score 210 bits
Score difference with first non-orthologous sequence - C.trachomatis:210 E.cuniculi:210

O84823              	100.00%		Q8SRI2              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for Q8SRI2 as seed ortholog is 100%.

Group of orthologs #29. Best score 200 bits
Score difference with first non-orthologous sequence - C.trachomatis:200 E.cuniculi:118

O84352              	100.00%		Q8SRV5              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for Q8SRV5 as seed ortholog is 98%.

Group of orthologs #30. Best score 191 bits
Score difference with first non-orthologous sequence - C.trachomatis:191 E.cuniculi:191

O84630              	100.00%		Q8SQT2              	100.00%
Bootstrap support for O84630 as seed ortholog is 100%.
Bootstrap support for Q8SQT2 as seed ortholog is 100%.

Group of orthologs #31. Best score 184 bits
Score difference with first non-orthologous sequence - C.trachomatis:184 E.cuniculi:184

P0CD78              	100.00%		Q8SRZ8              	100.00%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for Q8SRZ8 as seed ortholog is 100%.

Group of orthologs #32. Best score 182 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 E.cuniculi:78

O84028              	100.00%		Q8SS36              	100.00%
Bootstrap support for O84028 as seed ortholog is 98%.
Bootstrap support for Q8SS36 as seed ortholog is 98%.

Group of orthologs #33. Best score 178 bits
Score difference with first non-orthologous sequence - C.trachomatis:178 E.cuniculi:178

O84613              	100.00%		Q8SR60              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for Q8SR60 as seed ortholog is 100%.

Group of orthologs #34. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 E.cuniculi:170

O84460              	100.00%		Q8SRD8              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for Q8SRD8 as seed ortholog is 100%.

Group of orthologs #35. Best score 168 bits
Score difference with first non-orthologous sequence - C.trachomatis:168 E.cuniculi:168

O84296              	100.00%		Q8SQV7              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for Q8SQV7 as seed ortholog is 100%.

Group of orthologs #36. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 E.cuniculi:163

O84734              	100.00%		Q8SS48              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for Q8SS48 as seed ortholog is 100%.

Group of orthologs #37. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 E.cuniculi:154

O84812              	100.00%		Q8SRR0              	100.00%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for Q8SRR0 as seed ortholog is 100%.

Group of orthologs #38. Best score 152 bits
Score difference with first non-orthologous sequence - C.trachomatis:34 E.cuniculi:152

O84260              	100.00%		Q8SQS2              	100.00%
Bootstrap support for O84260 as seed ortholog is 79%.
Bootstrap support for Q8SQS2 as seed ortholog is 100%.

Group of orthologs #39. Best score 146 bits
Score difference with first non-orthologous sequence - C.trachomatis:146 E.cuniculi:146

O84668              	100.00%		Q8SS63              	100.00%
O84193              	10.61%		
Bootstrap support for O84668 as seed ortholog is 100%.
Bootstrap support for Q8SS63 as seed ortholog is 100%.

Group of orthologs #40. Best score 145 bits
Score difference with first non-orthologous sequence - C.trachomatis:145 E.cuniculi:145

O84608              	100.00%		Q8SS85              	100.00%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for Q8SS85 as seed ortholog is 100%.

Group of orthologs #41. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 E.cuniculi:141

O84444              	100.00%		Q8SQT7              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for Q8SQT7 as seed ortholog is 100%.

Group of orthologs #42. Best score 139 bits
Score difference with first non-orthologous sequence - C.trachomatis:139 E.cuniculi:139

O84478              	100.00%		Q8SUX1              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for Q8SUX1 as seed ortholog is 100%.

Group of orthologs #43. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 E.cuniculi:133

O84068              	100.00%		Q8SRA2              	100.00%
O84502              	25.55%		Q8SUF9              	24.47%
                    	       		Q8SUG0              	20.46%
                    	       		Q8SUG7              	13.29%
Bootstrap support for O84068 as seed ortholog is 100%.
Bootstrap support for Q8SRA2 as seed ortholog is 100%.

Group of orthologs #44. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 E.cuniculi:53

P0CD71              	100.00%		Q8SS29              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for Q8SS29 as seed ortholog is 89%.

Group of orthologs #45. Best score 131 bits
Score difference with first non-orthologous sequence - C.trachomatis:131 E.cuniculi:131

O84345              	100.00%		Q8SRK0              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for Q8SRK0 as seed ortholog is 100%.

Group of orthologs #46. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 E.cuniculi:129

O84266              	100.00%		Q8SSC7              	100.00%
                    	       		Q8SR22              	12.42%
                    	       		Q8SS58              	12.42%
                    	       		Q8SQV1              	10.77%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for Q8SSC7 as seed ortholog is 100%.

Group of orthologs #47. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 E.cuniculi:129

O84247              	100.00%		Q8SQM8              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for Q8SQM8 as seed ortholog is 100%.

Group of orthologs #48. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 E.cuniculi:43

O84546              	100.00%		Q8SRQ8              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for Q8SRQ8 as seed ortholog is 80%.

Group of orthologs #49. Best score 128 bits
Score difference with first non-orthologous sequence - C.trachomatis:128 E.cuniculi:128

O84098              	100.00%		Q8SQQ6              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for Q8SQQ6 as seed ortholog is 100%.

Group of orthologs #50. Best score 128 bits
Score difference with first non-orthologous sequence - C.trachomatis:128 E.cuniculi:128

O84579              	100.00%		Q8SS00              	100.00%
Bootstrap support for O84579 as seed ortholog is 100%.
Bootstrap support for Q8SS00 as seed ortholog is 100%.

Group of orthologs #51. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:126 E.cuniculi:126

O84196              	100.00%		Q8SRS7              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for Q8SRS7 as seed ortholog is 100%.

Group of orthologs #52. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:26 E.cuniculi:126

O84297              	100.00%		Q8SW65              	100.00%
Bootstrap support for O84297 as seed ortholog is 74%.
Alternative seed ortholog is O84822 (26 bits away from this cluster)
Bootstrap support for Q8SW65 as seed ortholog is 100%.

Group of orthologs #53. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 E.cuniculi:123

O84332              	100.00%		Q8SQZ1              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for Q8SQZ1 as seed ortholog is 100%.

Group of orthologs #54. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 E.cuniculi:123

O84835              	100.00%		Q8SRR2              	100.00%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for Q8SRR2 as seed ortholog is 100%.

Group of orthologs #55. Best score 113 bits
Score difference with first non-orthologous sequence - C.trachomatis:113 E.cuniculi:113

O84649              	100.00%		Q8SS31              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for Q8SS31 as seed ortholog is 100%.

Group of orthologs #56. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 E.cuniculi:106

O84720              	100.00%		Q8SQS1              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for Q8SQS1 as seed ortholog is 100%.

Group of orthologs #57. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 E.cuniculi:102

O84130              	100.00%		Q8SVC2              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for Q8SVC2 as seed ortholog is 100%.

Group of orthologs #58. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 E.cuniculi:101

O84508              	100.00%		Q8SRM7              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for Q8SRM7 as seed ortholog is 100%.

Group of orthologs #59. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 E.cuniculi:97

P36431              	100.00%		Q8SSD7              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for Q8SSD7 as seed ortholog is 100%.

Group of orthologs #60. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 E.cuniculi:96

O84200              	100.00%		Q8SQQ3              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for Q8SQQ3 as seed ortholog is 100%.

Group of orthologs #61. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 E.cuniculi:96

O84843              	100.00%		Q8SRG9              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for Q8SRG9 as seed ortholog is 100%.

Group of orthologs #62. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 E.cuniculi:32

O84650              	100.00%		Q8SUV4              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for Q8SUV4 as seed ortholog is 83%.

Group of orthologs #63. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 E.cuniculi:95

O84358              	100.00%		Q8SS59              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for Q8SS59 as seed ortholog is 100%.

Group of orthologs #64. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 E.cuniculi:95

O84139              	100.00%		Q8STM6              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for Q8STM6 as seed ortholog is 100%.

Group of orthologs #65. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 E.cuniculi:94

O84123              	100.00%		Q8SRP6              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for Q8SRP6 as seed ortholog is 100%.

Group of orthologs #66. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 E.cuniculi:94

O84458              	100.00%		Q8SS83              	100.00%
Bootstrap support for O84458 as seed ortholog is 100%.
Bootstrap support for Q8SS83 as seed ortholog is 100%.

Group of orthologs #67. Best score 92 bits
Score difference with first non-orthologous sequence - C.trachomatis:92 E.cuniculi:92

O84188              	100.00%		Q8SR89              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for Q8SR89 as seed ortholog is 100%.

Group of orthologs #68. Best score 88 bits
Score difference with first non-orthologous sequence - C.trachomatis:88 E.cuniculi:88

O84338              	100.00%		Q8SQM0              	100.00%
                    	       		Q8SSI2              	14.17%
                    	       		Q8SSG6              	5.83%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for Q8SQM0 as seed ortholog is 100%.

Group of orthologs #69. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 E.cuniculi:84

O84033              	100.00%		Q8SSJ6              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for Q8SSJ6 as seed ortholog is 100%.

Group of orthologs #70. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 E.cuniculi:82

O84530              	100.00%		Q8SSM6              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for Q8SSM6 as seed ortholog is 100%.

Group of orthologs #71. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 E.cuniculi:80

O84665              	100.00%		Q8SVK5              	100.00%
O84108              	5.75%		
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for Q8SVK5 as seed ortholog is 100%.

Group of orthologs #72. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 E.cuniculi:79

O84391              	100.00%		Q8SW07              	100.00%
                    	       		Q8SUU4              	40.44%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for Q8SW07 as seed ortholog is 100%.

Group of orthologs #73. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 E.cuniculi:78

O84719              	100.00%		Q8SS04              	100.00%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for Q8SS04 as seed ortholog is 100%.

Group of orthologs #74. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 E.cuniculi:77

O84732              	100.00%		Q8SRH4              	100.00%
                    	       		Q8SSI1              	7.73%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for Q8SRH4 as seed ortholog is 100%.

Group of orthologs #75. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 E.cuniculi:75

O84557              	100.00%		Q8SSK0              	100.00%
Bootstrap support for O84557 as seed ortholog is 100%.
Bootstrap support for Q8SSK0 as seed ortholog is 100%.

Group of orthologs #76. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 E.cuniculi:74

P0C0Z7              	100.00%		Q8SRP9              	100.00%
O84609              	14.12%		Q8SR53              	16.16%
O84760              	5.92%		Q8SSC9              	16.06%
                    	       		Q8SQP2              	15.85%
                    	       		Q8SR76              	13.66%
                    	       		Q8SSH3              	12.20%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for Q8SRP9 as seed ortholog is 100%.

Group of orthologs #77. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 E.cuniculi:72

O84469              	100.00%		Q8SQS9              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for Q8SQS9 as seed ortholog is 100%.

Group of orthologs #78. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 E.cuniculi:72

P0CD81              	100.00%		Q8SRA7              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for Q8SRA7 as seed ortholog is 100%.

Group of orthologs #79. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 E.cuniculi:71

O84215              	100.00%		Q8SR79              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for Q8SR79 as seed ortholog is 100%.

Group of orthologs #80. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 E.cuniculi:29

O84781              	100.00%		Q8SRZ9              	100.00%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for Q8SRZ9 as seed ortholog is 74%.
Alternative seed ortholog is Q8SR39 (29 bits away from this cluster)

Group of orthologs #81. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 E.cuniculi:69

O84307              	100.00%		Q8SQK3              	100.00%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for Q8SQK3 as seed ortholog is 100%.

Group of orthologs #82. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 E.cuniculi:67

O84527              	100.00%		Q8SQM3              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for Q8SQM3 as seed ortholog is 100%.

Group of orthologs #83. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 E.cuniculi:67

O84851              	100.00%		Q8SQJ5              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for Q8SQJ5 as seed ortholog is 100%.

Group of orthologs #84. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 E.cuniculi:67

P0A4C8              	100.00%		Q8SRG6              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for Q8SRG6 as seed ortholog is 100%.

Group of orthologs #85. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 E.cuniculi:66

O84547              	100.00%		Q8SRR3              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for Q8SRR3 as seed ortholog is 100%.

Group of orthologs #86. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 E.cuniculi:64

O84456              	100.00%		Q8SQJ8              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for Q8SQJ8 as seed ortholog is 100%.

Group of orthologs #87. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 E.cuniculi:64

P0CE03              	100.00%		Q8SSA6              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for Q8SSA6 as seed ortholog is 100%.

Group of orthologs #88. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 E.cuniculi:59

O84032              	100.00%		Q8SSA4              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for Q8SSA4 as seed ortholog is 100%.

Group of orthologs #89. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 E.cuniculi:14

O84294              	100.00%		Q8SRS0              	100.00%
Bootstrap support for O84294 as seed ortholog is 100%.
Bootstrap support for Q8SRS0 as seed ortholog is 73%.
Alternative seed ortholog is Q8SS02 (14 bits away from this cluster)

Group of orthologs #90. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 E.cuniculi:57

O84777              	100.00%		Q8SR69              	100.00%
Bootstrap support for O84777 as seed ortholog is 100%.
Bootstrap support for Q8SR69 as seed ortholog is 100%.

Group of orthologs #91. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 E.cuniculi:56

O84589              	100.00%		O96771              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for O96771 as seed ortholog is 100%.

Group of orthologs #92. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 E.cuniculi:56

O84703              	100.00%		Q8SRB8              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for Q8SRB8 as seed ortholog is 100%.

Group of orthologs #93. Best score 53 bits
Score difference with first non-orthologous sequence - C.trachomatis:53 E.cuniculi:53

P38004              	100.00%		Q8SRA8              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for Q8SRA8 as seed ortholog is 100%.

Group of orthologs #94. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 E.cuniculi:52

P0CD80              	100.00%		Q8SQX0              	100.00%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for Q8SQX0 as seed ortholog is 100%.

Group of orthologs #95. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 E.cuniculi:51

O84442              	100.00%		Q8STL9              	100.00%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for Q8STL9 as seed ortholog is 100%.

Group of orthologs #96. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 E.cuniculi:47

P0CE04              	100.00%		Q8SRP2              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for Q8SRP2 as seed ortholog is 100%.

Group of orthologs #97. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 E.cuniculi:46

P0CE05              	100.00%		Q8SS53              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for Q8SS53 as seed ortholog is 100%.

Group of orthologs #98. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 E.cuniculi:45

P66480              	100.00%		Q8SRE7              	100.00%
Bootstrap support for P66480 as seed ortholog is 100%.
Bootstrap support for Q8SRE7 as seed ortholog is 100%.

Group of orthologs #99. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 E.cuniculi:44

O84499              	100.00%		Q8SU80              	100.00%
Bootstrap support for O84499 as seed ortholog is 100%.
Bootstrap support for Q8SU80 as seed ortholog is 100%.

Group of orthologs #100. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 E.cuniculi:43

P66370              	100.00%		Q8SR65              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for Q8SR65 as seed ortholog is 100%.

Group of orthologs #101. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 E.cuniculi:43

P0CE06              	100.00%		Q8SS72              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for Q8SS72 as seed ortholog is 100%.

Group of orthologs #102. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 E.cuniculi:42

O84618              	100.00%		O62583              	100.00%
Bootstrap support for O84618 as seed ortholog is 100%.
Bootstrap support for O62583 as seed ortholog is 100%.

Group of orthologs #103. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 E.cuniculi:42

O84496              	100.00%		Q8SQX7              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for Q8SQX7 as seed ortholog is 100%.

Group of orthologs #104. Best score 41 bits
Score difference with first non-orthologous sequence - C.trachomatis:41 E.cuniculi:41

P0CD88              	100.00%		Q8SSG9              	100.00%
Bootstrap support for P0CD88 as seed ortholog is 100%.
Bootstrap support for Q8SSG9 as seed ortholog is 100%.