###################################
188 groups of orthologs
196 in-paralogs from C.trachomatis
344 in-paralogs from D.pseudoobscura
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 861 bits
Score difference with first non-orthologous sequence - C.trachomatis:861 D.pseudoobscura:630

O84022              	100.00%		Q29F05              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for Q29F05 as seed ortholog is 100%.

Group of orthologs #2. Best score 834 bits
Score difference with first non-orthologous sequence - C.trachomatis:834 D.pseudoobscura:834

O84250              	100.00%		Q29MI1              	100.00%
Bootstrap support for O84250 as seed ortholog is 100%.
Bootstrap support for Q29MI1 as seed ortholog is 100%.

Group of orthologs #3. Best score 689 bits
Score difference with first non-orthologous sequence - C.trachomatis:689 D.pseudoobscura:689

O84348              	100.00%		Q29DF2              	100.00%
                    	       		B5DWR6              	78.99%
                    	       		B5DLI0              	37.20%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for Q29DF2 as seed ortholog is 100%.

Group of orthologs #4. Best score 683 bits
Score difference with first non-orthologous sequence - C.trachomatis:683 D.pseudoobscura:128

P17821              	100.00%		Q28X59              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for Q28X59 as seed ortholog is 99%.

Group of orthologs #5. Best score 602 bits
Score difference with first non-orthologous sequence - C.trachomatis:602 D.pseudoobscura:602

O84716              	100.00%		Q28ZU4              	100.00%
                    	       		Q28ZU3              	51.10%
Bootstrap support for O84716 as seed ortholog is 100%.
Bootstrap support for Q28ZU4 as seed ortholog is 100%.

Group of orthologs #6. Best score 549 bits
Score difference with first non-orthologous sequence - C.trachomatis:370 D.pseudoobscura:181

P0C0Z7              	100.00%		B5DL96              	100.00%
                    	       		B5DJP5              	65.75%
                    	       		B5DI17              	21.61%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for B5DL96 as seed ortholog is 100%.

Group of orthologs #7. Best score 532 bits
Score difference with first non-orthologous sequence - C.trachomatis:532 D.pseudoobscura:131

O84444              	100.00%		Q29N77              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for Q29N77 as seed ortholog is 99%.

Group of orthologs #8. Best score 522 bits
Score difference with first non-orthologous sequence - C.trachomatis:522 D.pseudoobscura:363

O84304              	100.00%		Q28Z57              	100.00%
                    	       		Q29DZ5              	8.15%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for Q28Z57 as seed ortholog is 100%.

Group of orthologs #9. Best score 522 bits
Score difference with first non-orthologous sequence - C.trachomatis:522 D.pseudoobscura:379

O84067              	100.00%		B5DKL9              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for B5DKL9 as seed ortholog is 100%.

Group of orthologs #10. Best score 507 bits
Score difference with first non-orthologous sequence - C.trachomatis:507 D.pseudoobscura:507

O84057              	100.00%		Q29DU3              	100.00%
                    	       		Q29E02              	41.69%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for Q29DU3 as seed ortholog is 100%.

Group of orthologs #11. Best score 484 bits
Score difference with first non-orthologous sequence - C.trachomatis:484 D.pseudoobscura:484

O84585              	100.00%		Q29N74              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for Q29N74 as seed ortholog is 100%.

Group of orthologs #12. Best score 473 bits
Score difference with first non-orthologous sequence - C.trachomatis:473 D.pseudoobscura:473

O84066              	100.00%		Q29FS9              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for Q29FS9 as seed ortholog is 100%.

Group of orthologs #13. Best score 472 bits
Score difference with first non-orthologous sequence - C.trachomatis:472 D.pseudoobscura:472

P0CD73              	100.00%		Q290F7              	100.00%
Bootstrap support for P0CD73 as seed ortholog is 100%.
Bootstrap support for Q290F7 as seed ortholog is 100%.

Group of orthologs #14. Best score 471 bits
Score difference with first non-orthologous sequence - C.trachomatis:471 D.pseudoobscura:471

O84863              	100.00%		B5DKG3              	100.00%
                    	       		Q29JI7              	51.48%
                    	       		B5DPI9              	46.55%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for B5DKG3 as seed ortholog is 100%.

Group of orthologs #15. Best score 452 bits
Score difference with first non-orthologous sequence - C.trachomatis:452 D.pseudoobscura:70

P0CD71              	100.00%		Q28ZS9              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for Q28ZS9 as seed ortholog is 97%.

Group of orthologs #16. Best score 451 bits
Score difference with first non-orthologous sequence - C.trachomatis:451 D.pseudoobscura:451

O84754              	100.00%		Q29NZ1              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for Q29NZ1 as seed ortholog is 100%.

Group of orthologs #17. Best score 438 bits
Score difference with first non-orthologous sequence - C.trachomatis:438 D.pseudoobscura:28

O84848              	100.00%		Q2LYL2              	100.00%
                    	       		Q29I07              	5.82%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for Q2LYL2 as seed ortholog is 75%.

Group of orthologs #18. Best score 433 bits
Score difference with first non-orthologous sequence - C.trachomatis:433 D.pseudoobscura:433

Q59321              	100.00%		Q2M197              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for Q2M197 as seed ortholog is 100%.

Group of orthologs #19. Best score 398 bits
Score difference with first non-orthologous sequence - C.trachomatis:398 D.pseudoobscura:398

O84849              	100.00%		Q29BB6              	100.00%
Bootstrap support for O84849 as seed ortholog is 100%.
Bootstrap support for Q29BB6 as seed ortholog is 100%.

Group of orthologs #20. Best score 376 bits
Score difference with first non-orthologous sequence - C.trachomatis:376 D.pseudoobscura:276

O84211              	100.00%		Q29E99              	100.00%
Bootstrap support for O84211 as seed ortholog is 100%.
Bootstrap support for Q29E99 as seed ortholog is 100%.

Group of orthologs #21. Best score 373 bits
Score difference with first non-orthologous sequence - C.trachomatis:373 D.pseudoobscura:373

O84310              	100.00%		B5DJE5              	100.00%
                    	       		Q29L63              	89.65%
                    	       		Q29L65              	64.59%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for B5DJE5 as seed ortholog is 100%.

Group of orthologs #22. Best score 358 bits
Score difference with first non-orthologous sequence - C.trachomatis:358 D.pseudoobscura:358

P0CE13              	100.00%		O44104              	100.00%
                    	       		Q290J6              	26.67%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for O44104 as seed ortholog is 100%.

Group of orthologs #23. Best score 350 bits
Score difference with first non-orthologous sequence - C.trachomatis:350 D.pseudoobscura:350

O84591              	100.00%		Q29LQ4              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for Q29LQ4 as seed ortholog is 100%.

Group of orthologs #24. Best score 348 bits
Score difference with first non-orthologous sequence - C.trachomatis:348 D.pseudoobscura:348

O84831              	100.00%		Q293H1              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for Q293H1 as seed ortholog is 100%.

Group of orthologs #25. Best score 342 bits
Score difference with first non-orthologous sequence - C.trachomatis:342 D.pseudoobscura:342

O84126              	100.00%		Q298Q8              	100.00%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for Q298Q8 as seed ortholog is 100%.

Group of orthologs #26. Best score 341 bits
Score difference with first non-orthologous sequence - C.trachomatis:341 D.pseudoobscura:234

O84546              	100.00%		Q29MV1              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for Q29MV1 as seed ortholog is 100%.

Group of orthologs #27. Best score 337 bits
Score difference with first non-orthologous sequence - C.trachomatis:337 D.pseudoobscura:337

O84098              	100.00%		B5DXK5              	100.00%
                    	       		B5DU58              	99.32%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for B5DXK5 as seed ortholog is 100%.

Group of orthologs #28. Best score 325 bits
Score difference with first non-orthologous sequence - C.trachomatis:325 D.pseudoobscura:325

O84829              	100.00%		B5DPQ3              	100.00%
                    	       		B5DL62              	32.93%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for B5DPQ3 as seed ortholog is 100%.

Group of orthologs #29. Best score 318 bits
Score difference with first non-orthologous sequence - C.trachomatis:318 D.pseudoobscura:318

O84823              	100.00%		Q29AH0              	100.00%
                    	       		I5APL2              	76.62%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for Q29AH0 as seed ortholog is 100%.

Group of orthologs #30. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 D.pseudoobscura:244

O84786              	100.00%		Q29G05              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for Q29G05 as seed ortholog is 100%.

Group of orthologs #31. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 D.pseudoobscura:164

O84561              	100.00%		Q2LZ16              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for Q2LZ16 as seed ortholog is 99%.

Group of orthologs #32. Best score 309 bits
Score difference with first non-orthologous sequence - C.trachomatis:309 D.pseudoobscura:309

P0CD78              	100.00%		Q29KW9              	100.00%
                    	       		Q29KX1              	38.58%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for Q29KW9 as seed ortholog is 100%.

Group of orthologs #33. Best score 307 bits
Score difference with first non-orthologous sequence - C.trachomatis:307 D.pseudoobscura:307

P0CE21              	100.00%		B5DYU6              	100.00%
                    	       		Q29KF0              	26.43%
                    	       		Q298S8              	26.16%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for B5DYU6 as seed ortholog is 100%.

Group of orthologs #34. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 D.pseudoobscura:304

O84248              	100.00%		Q29AC1              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for Q29AC1 as seed ortholog is 100%.

Group of orthologs #35. Best score 301 bits
Score difference with first non-orthologous sequence - C.trachomatis:301 D.pseudoobscura:301

O84315              	100.00%		B5DZ19              	100.00%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for B5DZ19 as seed ortholog is 100%.

Group of orthologs #36. Best score 298 bits
Score difference with first non-orthologous sequence - C.trachomatis:298 D.pseudoobscura:167

O84035              	100.00%		Q292H1              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for Q292H1 as seed ortholog is 99%.

Group of orthologs #37. Best score 290 bits
Score difference with first non-orthologous sequence - C.trachomatis:290 D.pseudoobscura:290

O84775              	100.00%		B5DXU6              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for B5DXU6 as seed ortholog is 100%.

Group of orthologs #38. Best score 290 bits
Score difference with first non-orthologous sequence - C.trachomatis:290 D.pseudoobscura:156

O84006              	100.00%		Q29BT3              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for Q29BT3 as seed ortholog is 99%.

Group of orthologs #39. Best score 288 bits
Score difference with first non-orthologous sequence - C.trachomatis:288 D.pseudoobscura:288

O84451              	100.00%		Q29EI4              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for Q29EI4 as seed ortholog is 100%.

Group of orthologs #40. Best score 286 bits
Score difference with first non-orthologous sequence - C.trachomatis:286 D.pseudoobscura:286

O84439              	100.00%		Q29H49              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for Q29H49 as seed ortholog is 100%.

Group of orthologs #41. Best score 282 bits
Score difference with first non-orthologous sequence - C.trachomatis:282 D.pseudoobscura:282

O84289              	100.00%		B5DNY9              	100.00%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for B5DNY9 as seed ortholog is 100%.

Group of orthologs #42. Best score 279 bits
Score difference with first non-orthologous sequence - C.trachomatis:279 D.pseudoobscura:279

O84828              	100.00%		Q2LZM5              	100.00%
                    	       		B5DYI6              	18.18%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for Q2LZM5 as seed ortholog is 100%.

Group of orthologs #43. Best score 267 bits
Score difference with first non-orthologous sequence - C.trachomatis:267 D.pseudoobscura:267

O84316              	100.00%		Q29IN2              	100.00%
                    	       		Q291D4              	8.07%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for Q29IN2 as seed ortholog is 100%.

Group of orthologs #44. Best score 260 bits
Score difference with first non-orthologous sequence - C.trachomatis:260 D.pseudoobscura:260

P0CE09              	100.00%		Q298X6              	100.00%
                    	       		Q28ZV6              	22.75%
                    	       		Q29N37              	5.01%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for Q298X6 as seed ortholog is 100%.

Group of orthologs #45. Best score 259 bits
Score difference with first non-orthologous sequence - C.trachomatis:259 D.pseudoobscura:259

P0CD72              	100.00%		Q28Y79              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for Q28Y79 as seed ortholog is 100%.

Group of orthologs #46. Best score 253 bits
Score difference with first non-orthologous sequence - C.trachomatis:253 D.pseudoobscura:186

O84309              	100.00%		Q29BS3              	100.00%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for Q29BS3 as seed ortholog is 99%.

Group of orthologs #47. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:121 D.pseudoobscura:121

O84249              	100.00%		Q29NY1              	100.00%
Bootstrap support for O84249 as seed ortholog is 99%.
Bootstrap support for Q29NY1 as seed ortholog is 99%.

Group of orthologs #48. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 D.pseudoobscura:251

O84065              	100.00%		Q28Z21              	100.00%
Bootstrap support for O84065 as seed ortholog is 100%.
Bootstrap support for Q28Z21 as seed ortholog is 100%.

Group of orthologs #49. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 D.pseudoobscura:17

O84787              	100.00%		Q291L4              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for Q291L4 as seed ortholog is 61%.
Alternative seed ortholog is Q292F2 (17 bits away from this cluster)

Group of orthologs #50. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 D.pseudoobscura:251

O84698              	100.00%		Q2LZ33              	100.00%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for Q2LZ33 as seed ortholog is 100%.

Group of orthologs #51. Best score 248 bits
Score difference with first non-orthologous sequence - C.trachomatis:248 D.pseudoobscura:248

P36431              	100.00%		Q29FB8              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for Q29FB8 as seed ortholog is 100%.

Group of orthologs #52. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 D.pseudoobscura:247

O84188              	100.00%		Q29HY8              	100.00%
                    	       		B5DRK3              	17.67%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for Q29HY8 as seed ortholog is 100%.

Group of orthologs #53. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 D.pseudoobscura:92

O84058              	100.00%		B5DX95              	100.00%
Bootstrap support for O84058 as seed ortholog is 99%.
Bootstrap support for B5DX95 as seed ortholog is 99%.

Group of orthologs #54. Best score 243 bits
Score difference with first non-orthologous sequence - C.trachomatis:243 D.pseudoobscura:136

O84352              	100.00%		Q29DF9              	100.00%
                    	       		Q29IE7              	18.29%
                    	       		Q29IA7              	14.55%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for Q29DF9 as seed ortholog is 99%.

Group of orthologs #55. Best score 241 bits
Score difference with first non-orthologous sequence - C.trachomatis:241 D.pseudoobscura:241

O84094              	100.00%		Q29FX8              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for Q29FX8 as seed ortholog is 100%.

Group of orthologs #56. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 D.pseudoobscura:7

O84797              	100.00%		Q2M1A6              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for Q2M1A6 as seed ortholog is 52%.
Alternative seed ortholog is Q29KC0 (7 bits away from this cluster)

Group of orthologs #57. Best score 239 bits
Score difference with first non-orthologous sequence - C.trachomatis:239 D.pseudoobscura:113

O84642              	100.00%		Q29LN4              	100.00%
                    	       		B5E189              	22.40%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for Q29LN4 as seed ortholog is 99%.

Group of orthologs #58. Best score 233 bits
Score difference with first non-orthologous sequence - C.trachomatis:233 D.pseudoobscura:233

O84562              	100.00%		Q2LYK1              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for Q2LYK1 as seed ortholog is 100%.

Group of orthologs #59. Best score 228 bits
Score difference with first non-orthologous sequence - C.trachomatis:228 D.pseudoobscura:92

O84732              	100.00%		B5DLH5              	100.00%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for B5DLH5 as seed ortholog is 62%.
Alternative seed ortholog is B5DLK6 (92 bits away from this cluster)

Group of orthologs #60. Best score 228 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 D.pseudoobscura:228

O84026              	100.00%		Q29KH7              	100.00%
Bootstrap support for O84026 as seed ortholog is 94%.
Bootstrap support for Q29KH7 as seed ortholog is 100%.

Group of orthologs #61. Best score 227 bits
Score difference with first non-orthologous sequence - C.trachomatis:227 D.pseudoobscura:227

O84344              	100.00%		B5DSC2              	100.00%
Bootstrap support for O84344 as seed ortholog is 100%.
Bootstrap support for B5DSC2 as seed ortholog is 100%.

Group of orthologs #62. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:225 D.pseudoobscura:225

O84296              	100.00%		Q28WQ2              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for Q28WQ2 as seed ortholog is 100%.

Group of orthologs #63. Best score 224 bits
Score difference with first non-orthologous sequence - C.trachomatis:224 D.pseudoobscura:224

O84596              	100.00%		Q2M0Z6              	100.00%
                    	       		Q292E4              	56.78%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for Q2M0Z6 as seed ortholog is 100%.

Group of orthologs #64. Best score 221 bits
Score difference with first non-orthologous sequence - C.trachomatis:221 D.pseudoobscura:221

O84812              	100.00%		Q2LYJ1              	100.00%
                    	       		Q29IT5              	6.91%
                    	       		B5DIC0              	5.78%
                    	       		B5DL88              	5.46%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for Q2LYJ1 as seed ortholog is 100%.

Group of orthologs #65. Best score 221 bits
Score difference with first non-orthologous sequence - C.trachomatis:221 D.pseudoobscura:221

O84007              	100.00%		Q298K0              	100.00%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for Q298K0 as seed ortholog is 100%.

Group of orthologs #66. Best score 218 bits
Score difference with first non-orthologous sequence - C.trachomatis:218 D.pseudoobscura:218

O84297              	100.00%		Q291F3              	100.00%
                    	       		Q28ZB9              	42.90%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for Q291F3 as seed ortholog is 100%.

Group of orthologs #67. Best score 215 bits
Score difference with first non-orthologous sequence - C.trachomatis:215 D.pseudoobscura:215

O84360              	100.00%		Q291J6              	100.00%
Bootstrap support for O84360 as seed ortholog is 100%.
Bootstrap support for Q291J6 as seed ortholog is 100%.

Group of orthologs #68. Best score 212 bits
Score difference with first non-orthologous sequence - C.trachomatis:212 D.pseudoobscura:212

O84196              	100.00%		Q29LG2              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for Q29LG2 as seed ortholog is 100%.

Group of orthologs #69. Best score 207 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 D.pseudoobscura:207

O84712              	100.00%		Q29CJ4              	100.00%
Bootstrap support for O84712 as seed ortholog is 99%.
Bootstrap support for Q29CJ4 as seed ortholog is 100%.

Group of orthologs #70. Best score 207 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 D.pseudoobscura:109

O84028              	100.00%		Q29FC0              	100.00%
Bootstrap support for O84028 as seed ortholog is 98%.
Bootstrap support for Q29FC0 as seed ortholog is 99%.

Group of orthologs #71. Best score 200 bits
Score difference with first non-orthologous sequence - C.trachomatis:200 D.pseudoobscura:22

O84345              	100.00%		B5E1J0              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for B5E1J0 as seed ortholog is 71%.
Alternative seed ortholog is Q29A24 (22 bits away from this cluster)

Group of orthologs #72. Best score 200 bits
Score difference with first non-orthologous sequence - C.trachomatis:200 D.pseudoobscura:200

O84638              	100.00%		Q2M0R1              	100.00%
Bootstrap support for O84638 as seed ortholog is 100%.
Bootstrap support for Q2M0R1 as seed ortholog is 100%.

Group of orthologs #73. Best score 198 bits
Score difference with first non-orthologous sequence - C.trachomatis:198 D.pseudoobscura:19

O84608              	100.00%		B5DRU1              	100.00%
                    	       		Q29IR1              	22.45%
                    	       		Q2LZA5              	7.14%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for B5DRU1 as seed ortholog is 78%.

Group of orthologs #74. Best score 198 bits
Score difference with first non-orthologous sequence - C.trachomatis:198 D.pseudoobscura:198

O84859              	100.00%		Q29BZ6              	100.00%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for Q29BZ6 as seed ortholog is 100%.

Group of orthologs #75. Best score 196 bits
Score difference with first non-orthologous sequence - C.trachomatis:196 D.pseudoobscura:196

O84081              	100.00%		Q294I2              	100.00%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for Q294I2 as seed ortholog is 100%.

Group of orthologs #76. Best score 195 bits
Score difference with first non-orthologous sequence - C.trachomatis:195 D.pseudoobscura:17

O84423              	100.00%		Q29NY9              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for Q29NY9 as seed ortholog is 73%.
Alternative seed ortholog is Q29K06 (17 bits away from this cluster)

Group of orthologs #77. Best score 193 bits
Score difference with first non-orthologous sequence - C.trachomatis:193 D.pseudoobscura:193

O84266              	100.00%		Q29J72              	100.00%
                    	       		Q29HB3              	14.18%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for Q29J72 as seed ortholog is 100%.

Group of orthologs #78. Best score 192 bits
Score difference with first non-orthologous sequence - C.trachomatis:192 D.pseudoobscura:192

O84332              	100.00%		Q29C17              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for Q29C17 as seed ortholog is 100%.

Group of orthologs #79. Best score 189 bits
Score difference with first non-orthologous sequence - C.trachomatis:189 D.pseudoobscura:189

O84406              	100.00%		Q29LM2              	100.00%
                    	       		Q29PH0              	14.64%
Bootstrap support for O84406 as seed ortholog is 100%.
Bootstrap support for Q29LM2 as seed ortholog is 100%.

Group of orthologs #80. Best score 186 bits
Score difference with first non-orthologous sequence - C.trachomatis:186 D.pseudoobscura:186

O84460              	100.00%		Q294L6              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for Q294L6 as seed ortholog is 100%.

Group of orthologs #81. Best score 179 bits
Score difference with first non-orthologous sequence - C.trachomatis:179 D.pseudoobscura:68

O84247              	100.00%		B5DIC8              	100.00%
                    	       		Q29IF7              	45.17%
                    	       		Q29IF6              	31.57%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for B5DIC8 as seed ortholog is 98%.

Group of orthologs #82. Best score 177 bits
Score difference with first non-orthologous sequence - C.trachomatis:177 D.pseudoobscura:24

O84734              	100.00%		Q299G0              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for Q299G0 as seed ortholog is 76%.

Group of orthologs #83. Best score 176 bits
Score difference with first non-orthologous sequence - C.trachomatis:176 D.pseudoobscura:24

O84049              	100.00%		Q29D04              	100.00%
                    	       		B5DV14              	84.35%
                    	       		B5DV15              	81.97%
                    	       		B5DV13              	73.58%
                    	       		B5DTY9              	49.95%
                    	       		B5DTX0              	39.79%
                    	       		B5DS68              	33.37%
                    	       		B5DV06              	30.36%
                    	       		Q2LZJ7              	21.55%
                    	       		B5DJX6              	21.45%
                    	       		Q291T8              	21.45%
                    	       		Q28XX2              	21.35%
                    	       		Q28XX6              	20.93%
                    	       		B5DHL1              	20.52%
                    	       		B5E1B9              	19.79%
                    	       		Q291U1              	16.17%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for Q29D04 as seed ortholog is 78%.

Group of orthologs #84. Best score 175 bits
Score difference with first non-orthologous sequence - C.trachomatis:175 D.pseudoobscura:45

O84676              	100.00%		Q29CL2              	100.00%
O84722              	10.91%		Q2M108              	66.04%
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for Q29CL2 as seed ortholog is 86%.

Group of orthologs #85. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 D.pseudoobscura:173

O84234              	100.00%		Q291U3              	100.00%
                    	       		B5DZ75              	38.82%
                    	       		Q29LA0              	24.40%
                    	       		Q29N16              	23.15%
                    	       		Q29ID8              	20.57%
                    	       		B5DZG7              	17.90%
                    	       		Q28XZ8              	17.90%
                    	       		Q28ZU2              	17.90%
                    	       		Q29F70              	16.47%
                    	       		Q29GB8              	15.94%
                    	       		B5DZP7              	15.85%
                    	       		Q29P54              	10.60%
Bootstrap support for O84234 as seed ortholog is 100%.
Bootstrap support for Q291U3 as seed ortholog is 100%.

Group of orthologs #86. Best score 168 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 D.pseudoobscura:168

O84755              	100.00%		B5DWE4              	100.00%
Bootstrap support for O84755 as seed ortholog is 94%.
Bootstrap support for B5DWE4 as seed ortholog is 100%.

Group of orthologs #87. Best score 167 bits
Score difference with first non-orthologous sequence - C.trachomatis:167 D.pseudoobscura:167

O84720              	100.00%		Q29PE0              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for Q29PE0 as seed ortholog is 100%.

Group of orthologs #88. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 D.pseudoobscura:163

O84704              	100.00%		B5DWV9              	100.00%
Bootstrap support for O84704 as seed ortholog is 100%.
Bootstrap support for B5DWV9 as seed ortholog is 100%.

Group of orthologs #89. Best score 158 bits
Score difference with first non-orthologous sequence - C.trachomatis:158 D.pseudoobscura:12

P38004              	100.00%		Q29HP4              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for Q29HP4 as seed ortholog is 64%.
Alternative seed ortholog is Q29IW6 (12 bits away from this cluster)

Group of orthologs #90. Best score 156 bits
Score difference with first non-orthologous sequence - C.trachomatis:156 D.pseudoobscura:156

O84727              	100.00%		Q295R2              	100.00%
                    	       		Q29AB2              	54.50%
                    	       		Q298T2              	11.71%
Bootstrap support for O84727 as seed ortholog is 100%.
Bootstrap support for Q295R2 as seed ortholog is 100%.

Group of orthologs #91. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 D.pseudoobscura:47

O84200              	100.00%		Q29HY2              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for Q29HY2 as seed ortholog is 90%.

Group of orthologs #92. Best score 152 bits
Score difference with first non-orthologous sequence - C.trachomatis:27 D.pseudoobscura:152

O84260              	100.00%		Q29L91              	100.00%
Bootstrap support for O84260 as seed ortholog is 75%.
Bootstrap support for Q29L91 as seed ortholog is 100%.

Group of orthologs #93. Best score 149 bits
Score difference with first non-orthologous sequence - C.trachomatis:149 D.pseudoobscura:149

P18584              	100.00%		Q297U2              	100.00%
Bootstrap support for P18584 as seed ortholog is 100%.
Bootstrap support for Q297U2 as seed ortholog is 100%.

Group of orthologs #94. Best score 148 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 D.pseudoobscura:148

O84123              	100.00%		Q28YJ4              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for Q28YJ4 as seed ortholog is 100%.

Group of orthologs #95. Best score 148 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 D.pseudoobscura:148

O84752              	100.00%		Q28Y18              	100.00%
Bootstrap support for O84752 as seed ortholog is 100%.
Bootstrap support for Q28Y18 as seed ortholog is 100%.

Group of orthologs #96. Best score 148 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 D.pseudoobscura:148

O84456              	100.00%		Q29J99              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for Q29J99 as seed ortholog is 100%.

Group of orthologs #97. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 D.pseudoobscura:141

O84835              	100.00%		Q28YK7              	100.00%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for Q28YK7 as seed ortholog is 100%.

Group of orthologs #98. Best score 140 bits
Score difference with first non-orthologous sequence - C.trachomatis:140 D.pseudoobscura:140

O84383              	100.00%		Q296H6              	100.00%
Bootstrap support for O84383 as seed ortholog is 100%.
Bootstrap support for Q296H6 as seed ortholog is 100%.

Group of orthologs #99. Best score 139 bits
Score difference with first non-orthologous sequence - C.trachomatis:139 D.pseudoobscura:139

O84864              	100.00%		Q29C81              	100.00%
                    	       		B5E0Y6              	52.27%
                    	       		Q29BI6              	23.77%
                    	       		Q29C55              	20.87%
                    	       		Q29EE1              	20.68%
                    	       		Q29CA3              	18.16%
                    	       		Q29A32              	16.71%
                    	       		Q293I4              	16.14%
Bootstrap support for O84864 as seed ortholog is 100%.
Bootstrap support for Q29C81 as seed ortholog is 100%.

Group of orthologs #100. Best score 136 bits
Score difference with first non-orthologous sequence - C.trachomatis:136 D.pseudoobscura:136

O84241              	100.00%		Q29EX9              	100.00%
Bootstrap support for O84241 as seed ortholog is 100%.
Bootstrap support for Q29EX9 as seed ortholog is 100%.

Group of orthologs #101. Best score 132 bits
Score difference with first non-orthologous sequence - C.trachomatis:132 D.pseudoobscura:132

O84492              	100.00%		Q297V9              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for Q297V9 as seed ortholog is 100%.

Group of orthologs #102. Best score 131 bits
Score difference with first non-orthologous sequence - C.trachomatis:131 D.pseudoobscura:131

O84274              	100.00%		I5APW6              	100.00%
Bootstrap support for O84274 as seed ortholog is 100%.
Bootstrap support for I5APW6 as seed ortholog is 100%.

Group of orthologs #103. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 D.pseudoobscura:37

O84130              	100.00%		Q290A8              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for Q290A8 as seed ortholog is 88%.

Group of orthologs #104. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 D.pseudoobscura:123

P55137              	100.00%		Q29DJ3              	100.00%
Bootstrap support for P55137 as seed ortholog is 100%.
Bootstrap support for Q29DJ3 as seed ortholog is 100%.

Group of orthologs #105. Best score 118 bits
Score difference with first non-orthologous sequence - C.trachomatis:118 D.pseudoobscura:49

O84033              	100.00%		Q29E07              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for Q29E07 as seed ortholog is 96%.

Group of orthologs #106. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 D.pseudoobscura:116

O84771              	100.00%		Q29A02              	100.00%
Bootstrap support for O84771 as seed ortholog is 100%.
Bootstrap support for Q29A02 as seed ortholog is 100%.

Group of orthologs #107. Best score 115 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 D.pseudoobscura:115

O84649              	100.00%		Q29K61              	100.00%
                    	       		Q29HK8              	12.65%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for Q29K61 as seed ortholog is 100%.

Group of orthologs #108. Best score 112 bits
Score difference with first non-orthologous sequence - C.trachomatis:112 D.pseudoobscura:112

O84435              	100.00%		Q29GG8              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for Q29GG8 as seed ortholog is 100%.

Group of orthologs #109. Best score 111 bits
Score difference with first non-orthologous sequence - C.trachomatis:111 D.pseudoobscura:34

O84508              	100.00%		B5DW72              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for B5DW72 as seed ortholog is 94%.

Group of orthologs #110. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 D.pseudoobscura:53

O84548              	100.00%		B5DZT7              	100.00%
Bootstrap support for O84548 as seed ortholog is 100%.
Bootstrap support for B5DZT7 as seed ortholog is 91%.

Group of orthologs #111. Best score 106 bits
Score difference with first non-orthologous sequence - C.trachomatis:106 D.pseudoobscura:106

O84535              	100.00%		B5DYL2              	100.00%
Bootstrap support for O84535 as seed ortholog is 100%.
Bootstrap support for B5DYL2 as seed ortholog is 100%.

Group of orthologs #112. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 D.pseudoobscura:105

O84599              	100.00%		Q29B03              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for Q29B03 as seed ortholog is 100%.

Group of orthologs #113. Best score 103 bits
Score difference with first non-orthologous sequence - C.trachomatis:103 D.pseudoobscura:103

O84478              	100.00%		Q29JJ7              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for Q29JJ7 as seed ortholog is 100%.

Group of orthologs #114. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 D.pseudoobscura:4

O84843              	100.00%		Q28YL8              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for Q28YL8 as seed ortholog is 54%.
Alternative seed ortholog is Q29HD7 (4 bits away from this cluster)

Group of orthologs #115. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 D.pseudoobscura:15

O84358              	100.00%		Q298Z5              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for Q298Z5 as seed ortholog is 69%.
Alternative seed ortholog is Q2LZ79 (15 bits away from this cluster)

Group of orthologs #116. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 D.pseudoobscura:12

O84530              	100.00%		Q29FA8              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for Q29FA8 as seed ortholog is 64%.
Alternative seed ortholog is Q2LZ31 (12 bits away from this cluster)

Group of orthologs #117. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 D.pseudoobscura:46

P66370              	100.00%		Q29J58              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for Q29J58 as seed ortholog is 98%.

Group of orthologs #118. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 D.pseudoobscura:96

O84687              	100.00%		Q29M94              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for Q29M94 as seed ortholog is 100%.

Group of orthologs #119. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 D.pseudoobscura:95

O84390              	100.00%		Q29KW3              	100.00%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for Q29KW3 as seed ortholog is 100%.

Group of orthologs #120. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 D.pseudoobscura:93

O84851              	100.00%		Q29AK1              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for Q29AK1 as seed ortholog is 100%.

Group of orthologs #121. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 D.pseudoobscura:91

O84782              	100.00%		Q29DY2              	100.00%
                    	       		Q290C4              	15.01%
                    	       		Q29KV1              	12.67%
                    	       		Q28Z52              	8.13%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for Q29DY2 as seed ortholog is 100%.

Group of orthologs #122. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 D.pseudoobscura:90

O84027              	100.00%		Q29PE1              	100.00%
Bootstrap support for O84027 as seed ortholog is 100%.
Bootstrap support for Q29PE1 as seed ortholog is 100%.

Group of orthologs #123. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 D.pseudoobscura:89

O84595              	100.00%		Q292X9              	100.00%
                    	       		Q29GD5              	56.74%
Bootstrap support for O84595 as seed ortholog is 100%.
Bootstrap support for Q292X9 as seed ortholog is 100%.

Group of orthologs #124. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 D.pseudoobscura:89

O84578              	100.00%		Q29B31              	100.00%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for Q29B31 as seed ortholog is 100%.

Group of orthologs #125. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 D.pseudoobscura:89

O84463              	100.00%		Q29CW4              	100.00%
Bootstrap support for O84463 as seed ortholog is 100%.
Bootstrap support for Q29CW4 as seed ortholog is 100%.

Group of orthologs #126. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 D.pseudoobscura:86

O84353              	100.00%		B5DK84              	100.00%
Bootstrap support for O84353 as seed ortholog is 100%.
Bootstrap support for B5DK84 as seed ortholog is 100%.

Group of orthologs #127. Best score 85 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 D.pseudoobscura:85

O84781              	100.00%		Q298J5              	100.00%
                    	       		Q29IR9              	20.26%
                    	       		B5DY67              	11.45%
                    	       		Q295R9              	11.35%
                    	       		B5DY66              	11.14%
                    	       		B5DXW6              	10.94%
                    	       		Q28ZR1              	10.74%
                    	       		B5DY64              	10.44%
                    	       		Q293L5              	10.44%
                    	       		B5DXQ0              	10.13%
                    	       		Q290C5              	9.83%
                    	       		B5DXP9              	9.63%
                    	       		Q28ZR0              	9.63%
                    	       		B5E0S2              	9.52%
                    	       		Q28WV7              	8.21%
                    	       		Q293L4              	7.40%
                    	       		B5DHR7              	6.59%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for Q298J5 as seed ortholog is 100%.

Group of orthologs #128. Best score 85 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 D.pseudoobscura:85

O84865              	100.00%		Q29MA2              	100.00%
                    	       		Q29MA3              	32.35%
                    	       		B5DJW3              	30.32%
Bootstrap support for O84865 as seed ortholog is 100%.
Bootstrap support for Q29MA2 as seed ortholog is 100%.

Group of orthologs #129. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 D.pseudoobscura:84

O84357              	100.00%		Q293Q5              	100.00%
                    	       		Q293Q6              	37.88%
Bootstrap support for O84357 as seed ortholog is 100%.
Bootstrap support for Q293Q5 as seed ortholog is 100%.

Group of orthologs #130. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 D.pseudoobscura:82

O84307              	100.00%		Q29MX4              	100.00%
                    	       		Q299L9              	65.30%
                    	       		Q299M5              	55.08%
                    	       		I5ANG6              	53.25%
                    	       		Q290V5              	28.08%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for Q29MX4 as seed ortholog is 100%.

Group of orthologs #131. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 D.pseudoobscura:82

O84215              	100.00%		B5DZH8              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for B5DZH8 as seed ortholog is 100%.

Group of orthologs #132. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 D.pseudoobscura:81

O84650              	100.00%		B5DHQ5              	100.00%
                    	       		Q29PI6              	7.57%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for B5DHQ5 as seed ortholog is 100%.

Group of orthologs #133. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 D.pseudoobscura:81

O84321              	100.00%		Q29AH6              	100.00%
Bootstrap support for O84321 as seed ortholog is 100%.
Bootstrap support for Q29AH6 as seed ortholog is 100%.

Group of orthologs #134. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 D.pseudoobscura:8

O84544              	100.00%		Q2LYS4              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for Q2LYS4 as seed ortholog is 65%.
Alternative seed ortholog is Q29J34 (8 bits away from this cluster)

Group of orthologs #135. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 D.pseudoobscura:79

O84212              	100.00%		B5DN06              	100.00%
                    	       		Q29F13              	22.66%
Bootstrap support for O84212 as seed ortholog is 100%.
Bootstrap support for B5DN06 as seed ortholog is 100%.

Group of orthologs #136. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 D.pseudoobscura:79

O84719              	100.00%		Q27928              	100.00%
                    	       		Q291Z0              	49.07%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for Q27928 as seed ortholog is 100%.

Group of orthologs #137. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 D.pseudoobscura:77

O84108              	100.00%		Q29CL8              	100.00%
O84665              	6.92%		
Bootstrap support for O84108 as seed ortholog is 100%.
Bootstrap support for Q29CL8 as seed ortholog is 100%.

Group of orthologs #138. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 D.pseudoobscura:76

O84139              	100.00%		Q28ZP6              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for Q28ZP6 as seed ortholog is 100%.

Group of orthologs #139. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 D.pseudoobscura:74

P36424              	100.00%		Q28ZS1              	100.00%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for Q28ZS1 as seed ortholog is 100%.

Group of orthologs #140. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 D.pseudoobscura:73

O84338              	100.00%		B5DHM4              	100.00%
                    	       		Q29G67              	23.04%
                    	       		Q29D84              	17.41%
                    	       		Q29M36              	5.97%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for B5DHM4 as seed ortholog is 100%.

Group of orthologs #141. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 D.pseudoobscura:73

O84499              	100.00%		Q293K8              	100.00%
Bootstrap support for O84499 as seed ortholog is 100%.
Bootstrap support for Q293K8 as seed ortholog is 100%.

Group of orthologs #142. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 D.pseudoobscura:73

O84294              	100.00%		Q29M52              	100.00%
Bootstrap support for O84294 as seed ortholog is 100%.
Bootstrap support for Q29M52 as seed ortholog is 100%.

Group of orthologs #143. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 D.pseudoobscura:72

O84689              	100.00%		Q28WS1              	100.00%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for Q28WS1 as seed ortholog is 100%.

Group of orthologs #144. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 D.pseudoobscura:2

P0CE03              	100.00%		Q297H7              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for Q297H7 as seed ortholog is 65%.
Alternative seed ortholog is B5DJ85 (2 bits away from this cluster)

Group of orthologs #145. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 D.pseudoobscura:17

O84469              	100.00%		Q29EU3              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for Q29EU3 as seed ortholog is 65%.
Alternative seed ortholog is Q28WM9 (17 bits away from this cluster)

Group of orthologs #146. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 D.pseudoobscura:72

O84284              	100.00%		Q2LYP9              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for Q2LYP9 as seed ortholog is 100%.

Group of orthologs #147. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 D.pseudoobscura:70

O84590              	100.00%		B5DQ82              	100.00%
                    	       		Q29P74              	11.79%
                    	       		Q299A2              	11.79%
                    	       		Q29MP0              	11.79%
                    	       		B5DWF0              	11.51%
                    	       		B5DQY0              	10.70%
                    	       		Q292K7              	10.52%
                    	       		Q297X4              	9.79%
                    	       		I7LAZ0              	9.25%
                    	       		Q29PM0              	8.88%
                    	       		Q2LZX7              	8.70%
                    	       		Q29ER5              	8.25%
                    	       		Q29NS3              	8.07%
                    	       		Q298G7              	7.71%
                    	       		B5DW65              	6.80%
                    	       		Q29DT5              	6.07%
                    	       		Q29NU1              	6.07%
                    	       		Q298Q2              	5.89%
                    	       		Q28ZC3              	5.17%
Bootstrap support for O84590 as seed ortholog is 100%.
Bootstrap support for B5DQ82 as seed ortholog is 100%.

Group of orthologs #148. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 D.pseudoobscura:69

O84189              	100.00%		Q29J44              	100.00%
Bootstrap support for O84189 as seed ortholog is 100%.
Bootstrap support for Q29J44 as seed ortholog is 100%.

Group of orthologs #149. Best score 68 bits
Score difference with first non-orthologous sequence - C.trachomatis:68 D.pseudoobscura:68

O84792              	100.00%		B5DL77              	100.00%
Bootstrap support for O84792 as seed ortholog is 100%.
Bootstrap support for B5DL77 as seed ortholog is 100%.

Group of orthologs #150. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 D.pseudoobscura:23

P0CD81              	100.00%		Q28X51              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for Q28X51 as seed ortholog is 83%.

Group of orthologs #151. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 D.pseudoobscura:66

O84391              	100.00%		Q294H3              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for Q294H3 as seed ortholog is 100%.

Group of orthologs #152. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 D.pseudoobscura:66

O84547              	100.00%		Q29G09              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for Q29G09 as seed ortholog is 100%.

Group of orthologs #153. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 D.pseudoobscura:66

O84686              	100.00%		Q29LB7              	100.00%
Bootstrap support for O84686 as seed ortholog is 100%.
Bootstrap support for Q29LB7 as seed ortholog is 100%.

Group of orthologs #154. Best score 65 bits
Score difference with first non-orthologous sequence - C.trachomatis:65 D.pseudoobscura:65

O84611              	100.00%		Q29L15              	100.00%
Bootstrap support for O84611 as seed ortholog is 100%.
Bootstrap support for Q29L15 as seed ortholog is 100%.

Group of orthologs #155. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 D.pseudoobscura:64

O84244              	100.00%		Q290Z0              	100.00%
Bootstrap support for O84244 as seed ortholog is 100%.
Bootstrap support for Q290Z0 as seed ortholog is 100%.

Group of orthologs #156. Best score 64 bits
Score difference with first non-orthologous sequence - C.trachomatis:64 D.pseudoobscura:64

O84684              	100.00%		Q29F88              	100.00%
Bootstrap support for O84684 as seed ortholog is 100%.
Bootstrap support for Q29F88 as seed ortholog is 100%.

Group of orthologs #157. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 D.pseudoobscura:63

P0CE04              	100.00%		Q28ZI6              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for Q28ZI6 as seed ortholog is 100%.

Group of orthologs #158. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 D.pseudoobscura:62

O84442              	100.00%		Q295W6              	100.00%
                    	       		Q29JN6              	9.07%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for Q295W6 as seed ortholog is 100%.

Group of orthologs #159. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 D.pseudoobscura:62

P0C0Z8              	100.00%		Q298W9              	100.00%
                    	       		Q2M0C3              	51.80%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for Q298W9 as seed ortholog is 100%.

Group of orthologs #160. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 D.pseudoobscura:61

O84128              	100.00%		Q290H8              	100.00%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for Q290H8 as seed ortholog is 100%.

Group of orthologs #161. Best score 60 bits
Score difference with first non-orthologous sequence - C.trachomatis:60 D.pseudoobscura:60

O84682              	100.00%		Q296Q2              	100.00%
                    	       		Q29F59              	32.05%
                    	       		Q29F58              	31.35%
Bootstrap support for O84682 as seed ortholog is 100%.
Bootstrap support for Q296Q2 as seed ortholog is 100%.

Group of orthologs #162. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 D.pseudoobscura:59

O84778              	100.00%		Q298M7              	100.00%
                    	       		B5DPT4              	39.70%
                    	       		Q29A69              	38.58%
Bootstrap support for O84778 as seed ortholog is 100%.
Bootstrap support for Q298M7 as seed ortholog is 100%.

Group of orthologs #163. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 D.pseudoobscura:58

P0A4C8              	100.00%		B5DKQ5              	100.00%
                    	       		Q29ND6              	100.00%
                    	       		B5DKQ3              	90.29%
                    	       		B5DSM5              	70.66%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for B5DKQ5 as seed ortholog is 100%.
Bootstrap support for Q29ND6 as seed ortholog is 100%.

Group of orthologs #164. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 D.pseudoobscura:58

O84842              	100.00%		Q2M0C2              	100.00%
Bootstrap support for O84842 as seed ortholog is 100%.
Bootstrap support for Q2M0C2 as seed ortholog is 100%.

Group of orthologs #165. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 D.pseudoobscura:57

O84527              	100.00%		Q29C13              	100.00%
                    	       		B5DTW2              	80.89%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for Q29C13 as seed ortholog is 100%.

Group of orthologs #166. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 D.pseudoobscura:56

O84221              	100.00%		Q298G6              	100.00%
Bootstrap support for O84221 as seed ortholog is 100%.
Bootstrap support for Q298G6 as seed ortholog is 100%.

Group of orthologs #167. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 D.pseudoobscura:56

O84822              	100.00%		Q29EN2              	100.00%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for Q29EN2 as seed ortholog is 100%.

Group of orthologs #168. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 D.pseudoobscura:55

O84381              	100.00%		Q293U0              	100.00%
                    	       		B5E0L9              	52.35%
                    	       		Q2M0C5              	50.00%
                    	       		B5DLR8              	49.83%
                    	       		Q2M0C6              	48.83%
                    	       		B5DLR9              	48.49%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for Q293U0 as seed ortholog is 100%.

Group of orthologs #169. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 D.pseudoobscura:55

O84470              	100.00%		Q29LK4              	100.00%
                    	       		B5DUY5              	24.42%
                    	       		Q29LF3              	24.42%
                    	       		B5DIZ9              	23.17%
                    	       		Q29LF2              	22.82%
                    	       		B5DIZ6              	12.30%
Bootstrap support for O84470 as seed ortholog is 100%.
Bootstrap support for Q29LK4 as seed ortholog is 100%.

Group of orthologs #170. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 D.pseudoobscura:54

O84218              	100.00%		Q29AD1              	100.00%
                    	       		Q29NJ9              	100.00%
                    	       		B5DQR8              	48.76%
                    	       		B5DYS6              	43.64%
                    	       		Q29H89              	35.61%
Bootstrap support for O84218 as seed ortholog is 100%.
Bootstrap support for Q29AD1 as seed ortholog is 100%.
Bootstrap support for Q29NJ9 as seed ortholog is 100%.

Group of orthologs #171. Best score 53 bits
Score difference with first non-orthologous sequence - C.trachomatis:53 D.pseudoobscura:53

O84779              	100.00%		Q29D90              	100.00%
                    	       		Q29D88              	74.30%
                    	       		Q29D89              	40.78%
                    	       		B5DRX0              	34.45%
                    	       		B5DQB3              	25.33%
Bootstrap support for O84779 as seed ortholog is 100%.
Bootstrap support for Q29D90 as seed ortholog is 100%.

Group of orthologs #172. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 D.pseudoobscura:7

P0CE02              	100.00%		Q299D5              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for Q299D5 as seed ortholog is 65%.
Alternative seed ortholog is Q294C3 (7 bits away from this cluster)

Group of orthologs #173. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 D.pseudoobscura:51

P66480              	100.00%		Q291U5              	100.00%
Bootstrap support for P66480 as seed ortholog is 100%.
Bootstrap support for Q291U5 as seed ortholog is 100%.

Group of orthologs #174. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 D.pseudoobscura:51

P0CE05              	100.00%		Q292D0              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for Q292D0 as seed ortholog is 100%.

Group of orthologs #175. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 D.pseudoobscura:51

O84589              	100.00%		Q29CF1              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for Q29CF1 as seed ortholog is 100%.

Group of orthologs #176. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 D.pseudoobscura:51

O84408              	100.00%		Q29DF8              	100.00%
Bootstrap support for O84408 as seed ortholog is 100%.
Bootstrap support for Q29DF8 as seed ortholog is 100%.

Group of orthologs #177. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 D.pseudoobscura:49

O84496              	100.00%		Q295Y7              	100.00%
                    	       		Q28WK1              	16.64%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for Q295Y7 as seed ortholog is 100%.

Group of orthologs #178. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 D.pseudoobscura:49

O84481              	100.00%		Q298I1              	100.00%
Bootstrap support for O84481 as seed ortholog is 100%.
Bootstrap support for Q298I1 as seed ortholog is 100%.

Group of orthologs #179. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 D.pseudoobscura:49

O84658              	100.00%		Q29MC1              	100.00%
Bootstrap support for O84658 as seed ortholog is 100%.
Bootstrap support for Q29MC1 as seed ortholog is 100%.

Group of orthologs #180. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 D.pseudoobscura:48

O84618              	100.00%		Q296C6              	100.00%
Bootstrap support for O84618 as seed ortholog is 100%.
Bootstrap support for Q296C6 as seed ortholog is 100%.

Group of orthologs #181. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 D.pseudoobscura:47

O84127              	100.00%		Q29MY6              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for Q29MY6 as seed ortholog is 100%.

Group of orthologs #182. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 D.pseudoobscura:46

O84219              	100.00%		Q28ZC1              	100.00%
Bootstrap support for O84219 as seed ortholog is 100%.
Bootstrap support for Q28ZC1 as seed ortholog is 100%.

Group of orthologs #183. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 D.pseudoobscura:4

O84395              	100.00%		B5DLB2              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for B5DLB2 as seed ortholog is 54%.
Alternative seed ortholog is Q2LZZ0 (4 bits away from this cluster)

Group of orthologs #184. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 D.pseudoobscura:45

P26623              	100.00%		B5DYB6              	100.00%
Bootstrap support for P26623 as seed ortholog is 100%.
Bootstrap support for B5DYB6 as seed ortholog is 100%.

Group of orthologs #185. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 D.pseudoobscura:45

O84032              	100.00%		Q29N40              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for Q29N40 as seed ortholog is 100%.

Group of orthologs #186. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 D.pseudoobscura:44

O84695              	100.00%		B5DPG3              	100.00%
O84205              	19.84%		
O84204              	19.64%		
O84696              	19.44%		
O84132              	13.23%		
O84071              	6.61%		
O84421              	5.61%		
Bootstrap support for O84695 as seed ortholog is 100%.
Bootstrap support for B5DPG3 as seed ortholog is 100%.

Group of orthologs #187. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 D.pseudoobscura:44

O84459              	100.00%		Q29H37              	100.00%
                    	       		Q29PF8              	18.25%
Bootstrap support for O84459 as seed ortholog is 100%.
Bootstrap support for Q29H37 as seed ortholog is 100%.

Group of orthologs #188. Best score 41 bits
Score difference with first non-orthologous sequence - C.trachomatis:41 D.pseudoobscura:41

O84655              	100.00%		Q291E5              	100.00%
Bootstrap support for O84655 as seed ortholog is 100%.
Bootstrap support for Q291E5 as seed ortholog is 100%.