###################################
425 groups of orthologs
554 in-paralogs from C.reinhardtii
488 in-paralogs from P.kodakaraensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 779 bits
Score difference with first non-orthologous sequence - C.reinhardtii:79 P.kodakaraensis:779

A8I9Z6              	100.00%		Q5JE32              	100.00%
Bootstrap support for A8I9Z6 as seed ortholog is 84%.
Bootstrap support for Q5JE32 as seed ortholog is 100%.

Group of orthologs #2. Best score 622 bits
Score difference with first non-orthologous sequence - C.reinhardtii:167 P.kodakaraensis:622

A8HW56              	100.00%		Q9V2X2              	100.00%
                    	       		Q5JE98              	48.90%
Bootstrap support for A8HW56 as seed ortholog is 99%.
Bootstrap support for Q9V2X2 as seed ortholog is 100%.

Group of orthologs #3. Best score 581 bits
Score difference with first non-orthologous sequence - C.reinhardtii:475 P.kodakaraensis:581

A8I164              	100.00%		Q5JIR3              	100.00%
Bootstrap support for A8I164 as seed ortholog is 100%.
Bootstrap support for Q5JIR3 as seed ortholog is 100%.

Group of orthologs #4. Best score 562 bits
Score difference with first non-orthologous sequence - C.reinhardtii:422 P.kodakaraensis:562

A8IA45              	100.00%		Q5JIR2              	100.00%
Bootstrap support for A8IA45 as seed ortholog is 100%.
Bootstrap support for Q5JIR2 as seed ortholog is 100%.

Group of orthologs #5. Best score 523 bits
Score difference with first non-orthologous sequence - C.reinhardtii:155 P.kodakaraensis:410

A8J9F3              	100.00%		Q5JJ31              	100.00%
Bootstrap support for A8J9F3 as seed ortholog is 98%.
Bootstrap support for Q5JJ31 as seed ortholog is 100%.

Group of orthologs #6. Best score 494 bits
Score difference with first non-orthologous sequence - C.reinhardtii:225 P.kodakaraensis:494

A8J829              	100.00%		Q5JDF4              	100.00%
Bootstrap support for A8J829 as seed ortholog is 92%.
Bootstrap support for Q5JDF4 as seed ortholog is 100%.

Group of orthologs #7. Best score 458 bits
Score difference with first non-orthologous sequence - C.reinhardtii:458 P.kodakaraensis:458

A8JC00              	100.00%		Q5JCZ1              	100.00%
Bootstrap support for A8JC00 as seed ortholog is 100%.
Bootstrap support for Q5JCZ1 as seed ortholog is 100%.

Group of orthologs #8. Best score 456 bits
Score difference with first non-orthologous sequence - C.reinhardtii:456 P.kodakaraensis:334

A8JH98              	100.00%		Q5JEV6              	100.00%
Bootstrap support for A8JH98 as seed ortholog is 100%.
Bootstrap support for Q5JEV6 as seed ortholog is 100%.

Group of orthologs #9. Best score 453 bits
Score difference with first non-orthologous sequence - C.reinhardtii:453 P.kodakaraensis:314

A8IFZ9              	100.00%		Q9YGB0              	100.00%
Bootstrap support for A8IFZ9 as seed ortholog is 100%.
Bootstrap support for Q9YGB0 as seed ortholog is 100%.

Group of orthologs #10. Best score 401 bits
Score difference with first non-orthologous sequence - C.reinhardtii:17 P.kodakaraensis:401

A8II42              	100.00%		Q52500              	100.00%
                    	       		P61111              	71.81%
Bootstrap support for A8II42 as seed ortholog is 64%.
Alternative seed ortholog is A8J7J2 (17 bits away from this cluster)
Bootstrap support for Q52500 as seed ortholog is 100%.

Group of orthologs #11. Best score 400 bits
Score difference with first non-orthologous sequence - C.reinhardtii:27 P.kodakaraensis:400

A8II71              	100.00%		Q5JGE5              	100.00%
Bootstrap support for A8II71 as seed ortholog is 75%.
Bootstrap support for Q5JGE5 as seed ortholog is 100%.

Group of orthologs #12. Best score 396 bits
Score difference with first non-orthologous sequence - C.reinhardtii:396 P.kodakaraensis:396

A8JG58              	100.00%		Q5JID8              	100.00%
Bootstrap support for A8JG58 as seed ortholog is 100%.
Bootstrap support for Q5JID8 as seed ortholog is 100%.

Group of orthologs #13. Best score 391 bits
Score difference with first non-orthologous sequence - C.reinhardtii:391 P.kodakaraensis:391

A8IZE7              	100.00%		Q5JH71              	100.00%
Bootstrap support for A8IZE7 as seed ortholog is 100%.
Bootstrap support for Q5JH71 as seed ortholog is 100%.

Group of orthologs #14. Best score 390 bits
Score difference with first non-orthologous sequence - C.reinhardtii:219 P.kodakaraensis:390

A8I8V5              	100.00%		Q5JDZ7              	100.00%
Bootstrap support for A8I8V5 as seed ortholog is 99%.
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.

Group of orthologs #15. Best score 387 bits
Score difference with first non-orthologous sequence - C.reinhardtii:82 P.kodakaraensis:387

A8JHX9              	100.00%		Q5JFZ3              	100.00%
A8JCA8              	13.37%		
Bootstrap support for A8JHX9 as seed ortholog is 99%.
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.

Group of orthologs #16. Best score 376 bits
Score difference with first non-orthologous sequence - C.reinhardtii:253 P.kodakaraensis:376

A8IT31              	100.00%		O93623              	100.00%
Bootstrap support for A8IT31 as seed ortholog is 100%.
Bootstrap support for O93623 as seed ortholog is 100%.

Group of orthologs #17. Best score 371 bits
Score difference with first non-orthologous sequence - C.reinhardtii:234 P.kodakaraensis:321

A8J4L1              	100.00%		Q5JDX6              	100.00%
Bootstrap support for A8J4L1 as seed ortholog is 100%.
Bootstrap support for Q5JDX6 as seed ortholog is 100%.

Group of orthologs #18. Best score 370 bits
Score difference with first non-orthologous sequence - C.reinhardtii:19 P.kodakaraensis:370

A8IR41              	100.00%		Q5JHS5              	100.00%
Bootstrap support for A8IR41 as seed ortholog is 74%.
Alternative seed ortholog is A8IHB3 (19 bits away from this cluster)
Bootstrap support for Q5JHS5 as seed ortholog is 100%.

Group of orthologs #19. Best score 366 bits
Score difference with first non-orthologous sequence - C.reinhardtii:18 P.kodakaraensis:366

A8I8N8              	100.00%		Q5JJA2              	100.00%
Bootstrap support for A8I8N8 as seed ortholog is 99%.
Bootstrap support for Q5JJA2 as seed ortholog is 100%.

Group of orthologs #20. Best score 366 bits
Score difference with first non-orthologous sequence - C.reinhardtii:112 P.kodakaraensis:253

A8IU68              	100.00%		Q5JGN7              	100.00%
Bootstrap support for A8IU68 as seed ortholog is 98%.
Bootstrap support for Q5JGN7 as seed ortholog is 99%.

Group of orthologs #21. Best score 358 bits
Score difference with first non-orthologous sequence - C.reinhardtii:222 P.kodakaraensis:358

A8I232              	100.00%		Q5JDL3              	100.00%
Bootstrap support for A8I232 as seed ortholog is 100%.
Bootstrap support for Q5JDL3 as seed ortholog is 100%.

Group of orthologs #22. Best score 356 bits
Score difference with first non-orthologous sequence - C.reinhardtii:86 P.kodakaraensis:159

A8HS79              	100.00%		Q5JJC8              	100.00%
Bootstrap support for A8HS79 as seed ortholog is 98%.
Bootstrap support for Q5JJC8 as seed ortholog is 100%.

Group of orthologs #23. Best score 344 bits
Score difference with first non-orthologous sequence - C.reinhardtii:344 P.kodakaraensis:344

A8JGD1              	100.00%		O59650              	100.00%
Q7XXT3              	12.68%		
Bootstrap support for A8JGD1 as seed ortholog is 100%.
Bootstrap support for O59650 as seed ortholog is 100%.

Group of orthologs #24. Best score 332 bits
Score difference with first non-orthologous sequence - C.reinhardtii:4 P.kodakaraensis:332

A8JCV0              	100.00%		Q5JD45              	100.00%
Bootstrap support for A8JCV0 as seed ortholog is 79%.
Bootstrap support for Q5JD45 as seed ortholog is 100%.

Group of orthologs #25. Best score 321 bits
Score difference with first non-orthologous sequence - C.reinhardtii:321 P.kodakaraensis:321

A8IRT6              	100.00%		Q5JE75              	100.00%
Bootstrap support for A8IRT6 as seed ortholog is 100%.
Bootstrap support for Q5JE75 as seed ortholog is 100%.

Group of orthologs #26. Best score 315 bits
Score difference with first non-orthologous sequence - C.reinhardtii:315 P.kodakaraensis:315

A8J841              	100.00%		Q5JD26              	100.00%
Bootstrap support for A8J841 as seed ortholog is 100%.
Bootstrap support for Q5JD26 as seed ortholog is 100%.

Group of orthologs #27. Best score 315 bits
Score difference with first non-orthologous sequence - C.reinhardtii:33 P.kodakaraensis:315

A8JCF0              	100.00%		Q5JIT1              	100.00%
Bootstrap support for A8JCF0 as seed ortholog is 98%.
Bootstrap support for Q5JIT1 as seed ortholog is 100%.

Group of orthologs #28. Best score 314 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:314

A8II74              	100.00%		Q5JFK3              	100.00%
Bootstrap support for A8II74 as seed ortholog is 96%.
Bootstrap support for Q5JFK3 as seed ortholog is 100%.

Group of orthologs #29. Best score 313 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:313

A8HX38              	100.00%		Q5JFZ4              	100.00%
Bootstrap support for A8HX38 as seed ortholog is 84%.
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.

Group of orthologs #30. Best score 304 bits
Score difference with first non-orthologous sequence - C.reinhardtii:304 P.kodakaraensis:304

A8ICJ1              	100.00%		Q5JIQ2              	100.00%
Bootstrap support for A8ICJ1 as seed ortholog is 100%.
Bootstrap support for Q5JIQ2 as seed ortholog is 100%.

Group of orthologs #31. Best score 296 bits
Score difference with first non-orthologous sequence - C.reinhardtii:296 P.kodakaraensis:296

A8ILJ9              	100.00%		Q5JI16              	100.00%
Bootstrap support for A8ILJ9 as seed ortholog is 100%.
Bootstrap support for Q5JI16 as seed ortholog is 100%.

Group of orthologs #32. Best score 288 bits
Score difference with first non-orthologous sequence - C.reinhardtii:288 P.kodakaraensis:288

A8IXE0              	100.00%		Q5JED2              	100.00%
Bootstrap support for A8IXE0 as seed ortholog is 100%.
Bootstrap support for Q5JED2 as seed ortholog is 100%.

Group of orthologs #33. Best score 286 bits
Score difference with first non-orthologous sequence - C.reinhardtii:286 P.kodakaraensis:286

A8J5U1              	100.00%		Q5JEP3              	100.00%
Bootstrap support for A8J5U1 as seed ortholog is 100%.
Bootstrap support for Q5JEP3 as seed ortholog is 100%.

Group of orthologs #34. Best score 284 bits
Score difference with first non-orthologous sequence - C.reinhardtii:284 P.kodakaraensis:241

A8J6T0              	100.00%		Q5JD73              	100.00%
A8JHP2              	6.54%		
Bootstrap support for A8J6T0 as seed ortholog is 100%.
Bootstrap support for Q5JD73 as seed ortholog is 100%.

Group of orthologs #35. Best score 280 bits
Score difference with first non-orthologous sequence - C.reinhardtii:280 P.kodakaraensis:280

A8JGS6              	100.00%		Q5JH31              	100.00%
A8JDK4              	14.75%		Q9HHC9              	7.19%
Bootstrap support for A8JGS6 as seed ortholog is 100%.
Bootstrap support for Q5JH31 as seed ortholog is 100%.

Group of orthologs #36. Best score 278 bits
Score difference with first non-orthologous sequence - C.reinhardtii:278 P.kodakaraensis:278

A8IEL6              	100.00%		Q5JJH1              	100.00%
Bootstrap support for A8IEL6 as seed ortholog is 100%.
Bootstrap support for Q5JJH1 as seed ortholog is 100%.

Group of orthologs #37. Best score 270 bits
Score difference with first non-orthologous sequence - C.reinhardtii:270 P.kodakaraensis:270

A8IBN3              	100.00%		Q5JF49              	100.00%
Bootstrap support for A8IBN3 as seed ortholog is 100%.
Bootstrap support for Q5JF49 as seed ortholog is 100%.

Group of orthologs #38. Best score 270 bits
Score difference with first non-orthologous sequence - C.reinhardtii:270 P.kodakaraensis:270

A8J825              	100.00%		Q5JGF1              	100.00%
Bootstrap support for A8J825 as seed ortholog is 100%.
Bootstrap support for Q5JGF1 as seed ortholog is 100%.

Group of orthologs #39. Best score 269 bits
Score difference with first non-orthologous sequence - C.reinhardtii:269 P.kodakaraensis:269

Q84UB2              	100.00%		Q5JFM1              	100.00%
Bootstrap support for Q84UB2 as seed ortholog is 100%.
Bootstrap support for Q5JFM1 as seed ortholog is 100%.

Group of orthologs #40. Best score 267 bits
Score difference with first non-orthologous sequence - C.reinhardtii:267 P.kodakaraensis:94

A8J0U0              	100.00%		Q5JHX4              	100.00%
A8J0U2              	100.00%		
A8J0U1              	96.64%		
A8J0U4              	95.75%		
A8J993              	66.16%		
A8ILT7              	27.53%		
A8J399              	26.21%		
Q8LP67              	20.14%		
A8JH07              	19.84%		
A8ILI7              	8.77%		
Bootstrap support for A8J0U0 as seed ortholog is 100%.
Bootstrap support for A8J0U2 as seed ortholog is 100%.
Bootstrap support for Q5JHX4 as seed ortholog is 99%.

Group of orthologs #41. Best score 267 bits
Score difference with first non-orthologous sequence - C.reinhardtii:267 P.kodakaraensis:267

A8IVR6              	100.00%		Q76I93              	100.00%
A8J104              	13.43%		
A8J214              	8.45%		
Bootstrap support for A8IVR6 as seed ortholog is 100%.
Bootstrap support for Q76I93 as seed ortholog is 100%.

Group of orthologs #42. Best score 267 bits
Score difference with first non-orthologous sequence - C.reinhardtii:267 P.kodakaraensis:267

A8IAK9              	100.00%		Q5JHM9              	100.00%
Bootstrap support for A8IAK9 as seed ortholog is 100%.
Bootstrap support for Q5JHM9 as seed ortholog is 100%.

Group of orthologs #43. Best score 265 bits
Score difference with first non-orthologous sequence - C.reinhardtii:183 P.kodakaraensis:174

A8JDI7              	100.00%		Q5JET4              	100.00%
Q6Q242              	22.58%		
Bootstrap support for A8JDI7 as seed ortholog is 100%.
Bootstrap support for Q5JET4 as seed ortholog is 100%.

Group of orthologs #44. Best score 265 bits
Score difference with first non-orthologous sequence - C.reinhardtii:210 P.kodakaraensis:265

A8IED9              	100.00%		Q5JJE8              	100.00%
Bootstrap support for A8IED9 as seed ortholog is 100%.
Bootstrap support for Q5JJE8 as seed ortholog is 100%.

Group of orthologs #45. Best score 265 bits
Score difference with first non-orthologous sequence - C.reinhardtii:265 P.kodakaraensis:265

A8JAP7              	100.00%		Q5JFM0              	100.00%
Bootstrap support for A8JAP7 as seed ortholog is 100%.
Bootstrap support for Q5JFM0 as seed ortholog is 100%.

Group of orthologs #46. Best score 263 bits
Score difference with first non-orthologous sequence - C.reinhardtii:263 P.kodakaraensis:263

A8J484              	100.00%		Q5JEY0              	100.00%
A8HPR5              	53.01%		
Bootstrap support for A8J484 as seed ortholog is 100%.
Bootstrap support for Q5JEY0 as seed ortholog is 100%.

Group of orthologs #47. Best score 262 bits
Score difference with first non-orthologous sequence - C.reinhardtii:187 P.kodakaraensis:262

A8JH25              	100.00%		Q9HHC4              	100.00%
A8J921              	6.75%		
Bootstrap support for A8JH25 as seed ortholog is 99%.
Bootstrap support for Q9HHC4 as seed ortholog is 100%.

Group of orthologs #48. Best score 262 bits
Score difference with first non-orthologous sequence - C.reinhardtii:262 P.kodakaraensis:262

A8IWF9              	100.00%		Q5JHC6              	100.00%
Bootstrap support for A8IWF9 as seed ortholog is 100%.
Bootstrap support for Q5JHC6 as seed ortholog is 100%.

Group of orthologs #49. Best score 262 bits
Score difference with first non-orthologous sequence - C.reinhardtii:262 P.kodakaraensis:262

P00877              	100.00%		O93627              	100.00%
Bootstrap support for P00877 as seed ortholog is 100%.
Bootstrap support for O93627 as seed ortholog is 100%.

Group of orthologs #50. Best score 260 bits
Score difference with first non-orthologous sequence - C.reinhardtii:260 P.kodakaraensis:260

A8J462              	100.00%		Q5JIL7              	100.00%
A8J0R6              	11.53%		
Bootstrap support for A8J462 as seed ortholog is 100%.
Bootstrap support for Q5JIL7 as seed ortholog is 100%.

Group of orthologs #51. Best score 257 bits
Score difference with first non-orthologous sequence - C.reinhardtii:104 P.kodakaraensis:200

A8J2R6              	100.00%		Q5JHX1              	100.00%
Bootstrap support for A8J2R6 as seed ortholog is 99%.
Bootstrap support for Q5JHX1 as seed ortholog is 100%.

Group of orthologs #52. Best score 254 bits
Score difference with first non-orthologous sequence - C.reinhardtii:43 P.kodakaraensis:193

A8J1X8              	100.00%		Q52428              	100.00%
Bootstrap support for A8J1X8 as seed ortholog is 83%.
Bootstrap support for Q52428 as seed ortholog is 99%.

Group of orthologs #53. Best score 252 bits
Score difference with first non-orthologous sequence - C.reinhardtii:1 P.kodakaraensis:252

A8IJV1              	100.00%		Q5JFZ6              	100.00%
A8IS61              	16.24%		
Bootstrap support for A8IJV1 as seed ortholog is 50%.
Alternative seed ortholog is A8IV98 (1 bits away from this cluster)
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.

Group of orthologs #54. Best score 252 bits
Score difference with first non-orthologous sequence - C.reinhardtii:131 P.kodakaraensis:252

A8J5J3              	100.00%		Q5JIJ0              	100.00%
Bootstrap support for A8J5J3 as seed ortholog is 99%.
Bootstrap support for Q5JIJ0 as seed ortholog is 100%.

Group of orthologs #55. Best score 251 bits
Score difference with first non-orthologous sequence - C.reinhardtii:251 P.kodakaraensis:251

A8I2Y4              	100.00%		Q5JIM2              	100.00%
Bootstrap support for A8I2Y4 as seed ortholog is 100%.
Bootstrap support for Q5JIM2 as seed ortholog is 100%.

Group of orthologs #56. Best score 251 bits
Score difference with first non-orthologous sequence - C.reinhardtii:251 P.kodakaraensis:251

A8J2Z6              	100.00%		Q5JFT4              	100.00%
Bootstrap support for A8J2Z6 as seed ortholog is 100%.
Bootstrap support for Q5JFT4 as seed ortholog is 100%.

Group of orthologs #57. Best score 250 bits
Score difference with first non-orthologous sequence - C.reinhardtii:159 P.kodakaraensis:250

A8J2Z9              	100.00%		Q5JGN0              	100.00%
Bootstrap support for A8J2Z9 as seed ortholog is 99%.
Bootstrap support for Q5JGN0 as seed ortholog is 100%.

Group of orthologs #58. Best score 246 bits
Score difference with first non-orthologous sequence - C.reinhardtii:246 P.kodakaraensis:129

A8IJJ8              	100.00%		Q5JDF6              	100.00%
Bootstrap support for A8IJJ8 as seed ortholog is 100%.
Bootstrap support for Q5JDF6 as seed ortholog is 99%.

Group of orthologs #59. Best score 244 bits
Score difference with first non-orthologous sequence - C.reinhardtii:244 P.kodakaraensis:244

A8JH46              	100.00%		Q5JIS8              	100.00%
Bootstrap support for A8JH46 as seed ortholog is 100%.
Bootstrap support for Q5JIS8 as seed ortholog is 100%.

Group of orthologs #60. Best score 243 bits
Score difference with first non-orthologous sequence - C.reinhardtii:58 P.kodakaraensis:243

A8IYT1              	100.00%		Q5JG59              	100.00%
Bootstrap support for A8IYT1 as seed ortholog is 92%.
Bootstrap support for Q5JG59 as seed ortholog is 100%.

Group of orthologs #61. Best score 243 bits
Score difference with first non-orthologous sequence - C.reinhardtii:243 P.kodakaraensis:243

Q8VZZ5              	100.00%		Q5JGK6              	100.00%
Bootstrap support for Q8VZZ5 as seed ortholog is 100%.
Bootstrap support for Q5JGK6 as seed ortholog is 100%.

Group of orthologs #62. Best score 241 bits
Score difference with first non-orthologous sequence - C.reinhardtii:36 P.kodakaraensis:241

A8J933              	100.00%		Q5JFW3              	100.00%
Bootstrap support for A8J933 as seed ortholog is 79%.
Bootstrap support for Q5JFW3 as seed ortholog is 100%.

Group of orthologs #63. Best score 237 bits
Score difference with first non-orthologous sequence - C.reinhardtii:124 P.kodakaraensis:74

Q6QJE1              	100.00%		Q5JFJ1              	100.00%
                    	       		Q5JF59              	21.58%
                    	       		Q5JJ54              	6.47%
Bootstrap support for Q6QJE1 as seed ortholog is 99%.
Bootstrap support for Q5JFJ1 as seed ortholog is 99%.

Group of orthologs #64. Best score 237 bits
Score difference with first non-orthologous sequence - C.reinhardtii:237 P.kodakaraensis:237

A8ID84              	100.00%		Q5JDJ0              	100.00%
Bootstrap support for A8ID84 as seed ortholog is 100%.
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.

Group of orthologs #65. Best score 237 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:237

A8J4W1              	100.00%		Q5JEW1              	100.00%
Bootstrap support for A8J4W1 as seed ortholog is 88%.
Bootstrap support for Q5JEW1 as seed ortholog is 100%.

Group of orthologs #66. Best score 237 bits
Score difference with first non-orthologous sequence - C.reinhardtii:174 P.kodakaraensis:237

A8JDZ0              	100.00%		Q5JIA4              	100.00%
Bootstrap support for A8JDZ0 as seed ortholog is 100%.
Bootstrap support for Q5JIA4 as seed ortholog is 100%.

Group of orthologs #67. Best score 232 bits
Score difference with first non-orthologous sequence - C.reinhardtii:74 P.kodakaraensis:232

A8IMY5              	100.00%		Q9YGB3              	100.00%
Bootstrap support for A8IMY5 as seed ortholog is 97%.
Bootstrap support for Q9YGB3 as seed ortholog is 100%.

Group of orthologs #68. Best score 231 bits
Score difference with first non-orthologous sequence - C.reinhardtii:231 P.kodakaraensis:231

A8J168              	100.00%		Q76KA8              	100.00%
Bootstrap support for A8J168 as seed ortholog is 100%.
Bootstrap support for Q76KA8 as seed ortholog is 100%.

Group of orthologs #69. Best score 227 bits
Score difference with first non-orthologous sequence - C.reinhardtii:227 P.kodakaraensis:227

A8HPJ0              	100.00%		P77933              	100.00%
Bootstrap support for A8HPJ0 as seed ortholog is 100%.
Bootstrap support for P77933 as seed ortholog is 100%.

Group of orthologs #70. Best score 227 bits
Score difference with first non-orthologous sequence - C.reinhardtii:227 P.kodakaraensis:227

A8JFT1              	100.00%		Q5JIP3              	100.00%
Bootstrap support for A8JFT1 as seed ortholog is 100%.
Bootstrap support for Q5JIP3 as seed ortholog is 100%.

Group of orthologs #71. Best score 225 bits
Score difference with first non-orthologous sequence - C.reinhardtii:225 P.kodakaraensis:225

A8IKB7              	100.00%		Q5JCY6              	100.00%
Bootstrap support for A8IKB7 as seed ortholog is 100%.
Bootstrap support for Q5JCY6 as seed ortholog is 100%.

Group of orthologs #72. Best score 225 bits
Score difference with first non-orthologous sequence - C.reinhardtii:104 P.kodakaraensis:225

A8IVK1              	100.00%		Q5JDH2              	100.00%
Bootstrap support for A8IVK1 as seed ortholog is 99%.
Bootstrap support for Q5JDH2 as seed ortholog is 100%.

Group of orthologs #73. Best score 223 bits
Score difference with first non-orthologous sequence - C.reinhardtii:223 P.kodakaraensis:223

A8IC95              	100.00%		Q5JGQ1              	100.00%
A8IW49              	51.04%		
Bootstrap support for A8IC95 as seed ortholog is 100%.
Bootstrap support for Q5JGQ1 as seed ortholog is 100%.

Group of orthologs #74. Best score 223 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:223

A8ITU7              	100.00%		Q5JGC4              	100.00%
Bootstrap support for A8ITU7 as seed ortholog is 93%.
Bootstrap support for Q5JGC4 as seed ortholog is 100%.

Group of orthologs #75. Best score 219 bits
Score difference with first non-orthologous sequence - C.reinhardtii:219 P.kodakaraensis:219

A8JC04              	100.00%		Q5JIG7              	100.00%
A8JFT4              	14.54%		
Bootstrap support for A8JC04 as seed ortholog is 100%.
Bootstrap support for Q5JIG7 as seed ortholog is 100%.

Group of orthologs #76. Best score 219 bits
Score difference with first non-orthologous sequence - C.reinhardtii:219 P.kodakaraensis:219

A8J355              	100.00%		Q5JH48              	100.00%
Bootstrap support for A8J355 as seed ortholog is 100%.
Bootstrap support for Q5JH48 as seed ortholog is 100%.

Group of orthologs #77. Best score 217 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:217

A8JH72              	100.00%		Q5JGG6              	100.00%
Bootstrap support for A8JH72 as seed ortholog is 81%.
Bootstrap support for Q5JGG6 as seed ortholog is 100%.

Group of orthologs #78. Best score 216 bits
Score difference with first non-orthologous sequence - C.reinhardtii:216 P.kodakaraensis:216

A8HXH6              	100.00%		Q5JFJ2              	100.00%
Bootstrap support for A8HXH6 as seed ortholog is 100%.
Bootstrap support for Q5JFJ2 as seed ortholog is 100%.

Group of orthologs #79. Best score 216 bits
Score difference with first non-orthologous sequence - C.reinhardtii:216 P.kodakaraensis:216

A8IA86              	100.00%		Q5JFN1              	100.00%
Bootstrap support for A8IA86 as seed ortholog is 100%.
Bootstrap support for Q5JFN1 as seed ortholog is 100%.

Group of orthologs #80. Best score 215 bits
Score difference with first non-orthologous sequence - C.reinhardtii:215 P.kodakaraensis:215

A8IUI9              	100.00%		Q5JIY0              	100.00%
Bootstrap support for A8IUI9 as seed ortholog is 100%.
Bootstrap support for Q5JIY0 as seed ortholog is 100%.

Group of orthologs #81. Best score 214 bits
Score difference with first non-orthologous sequence - C.reinhardtii:122 P.kodakaraensis:131

A8HYH7              	100.00%		Q5JGQ7              	100.00%
A8JCS4              	28.52%		
Bootstrap support for A8HYH7 as seed ortholog is 99%.
Bootstrap support for Q5JGQ7 as seed ortholog is 99%.

Group of orthologs #82. Best score 213 bits
Score difference with first non-orthologous sequence - C.reinhardtii:111 P.kodakaraensis:67

A8HVY8              	100.00%		Q5JFZ8              	100.00%
                    	       		Q5JGP4              	5.98%
Bootstrap support for A8HVY8 as seed ortholog is 99%.
Bootstrap support for Q5JFZ8 as seed ortholog is 94%.

Group of orthologs #83. Best score 213 bits
Score difference with first non-orthologous sequence - C.reinhardtii:213 P.kodakaraensis:213

A8J2X6              	100.00%		Q5JFW1              	100.00%
Bootstrap support for A8J2X6 as seed ortholog is 100%.
Bootstrap support for Q5JFW1 as seed ortholog is 100%.

Group of orthologs #84. Best score 213 bits
Score difference with first non-orthologous sequence - C.reinhardtii:213 P.kodakaraensis:213

A8J5D8              	100.00%		Q5JI21              	100.00%
Bootstrap support for A8J5D8 as seed ortholog is 100%.
Bootstrap support for Q5JI21 as seed ortholog is 100%.

Group of orthologs #85. Best score 212 bits
Score difference with first non-orthologous sequence - C.reinhardtii:212 P.kodakaraensis:212

A8IXY4              	100.00%		Q5JD37              	100.00%
A8IYW8              	80.51%		
Bootstrap support for A8IXY4 as seed ortholog is 100%.
Bootstrap support for Q5JD37 as seed ortholog is 100%.

Group of orthologs #86. Best score 212 bits
Score difference with first non-orthologous sequence - C.reinhardtii:22 P.kodakaraensis:212

A8HQI6              	100.00%		Q5JIU9              	100.00%
Bootstrap support for A8HQI6 as seed ortholog is 71%.
Alternative seed ortholog is A8J6K9 (22 bits away from this cluster)
Bootstrap support for Q5JIU9 as seed ortholog is 100%.

Group of orthologs #87. Best score 211 bits
Score difference with first non-orthologous sequence - C.reinhardtii:124 P.kodakaraensis:53

A8HVL4              	100.00%		Q5JI15              	100.00%
Bootstrap support for A8HVL4 as seed ortholog is 99%.
Bootstrap support for Q5JI15 as seed ortholog is 99%.

Group of orthologs #88. Best score 208 bits
Score difference with first non-orthologous sequence - C.reinhardtii:208 P.kodakaraensis:140

A8I6R4              	100.00%		Q5JFN7              	100.00%
Bootstrap support for A8I6R4 as seed ortholog is 100%.
Bootstrap support for Q5JFN7 as seed ortholog is 99%.

Group of orthologs #89. Best score 208 bits
Score difference with first non-orthologous sequence - C.reinhardtii:208 P.kodakaraensis:208

A8J2Z8              	100.00%		Q5JF63              	100.00%
Bootstrap support for A8J2Z8 as seed ortholog is 100%.
Bootstrap support for Q5JF63 as seed ortholog is 100%.

Group of orthologs #90. Best score 208 bits
Score difference with first non-orthologous sequence - C.reinhardtii:208 P.kodakaraensis:208

A8JF35              	100.00%		Q5JH16              	100.00%
Bootstrap support for A8JF35 as seed ortholog is 100%.
Bootstrap support for Q5JH16 as seed ortholog is 100%.

Group of orthologs #91. Best score 205 bits
Score difference with first non-orthologous sequence - C.reinhardtii:205 P.kodakaraensis:65

Q6V9A8              	100.00%		Q5JGG2              	100.00%
Bootstrap support for Q6V9A8 as seed ortholog is 100%.
Bootstrap support for Q5JGG2 as seed ortholog is 93%.

Group of orthologs #92. Best score 204 bits
Score difference with first non-orthologous sequence - C.reinhardtii:32 P.kodakaraensis:204

A8J0R7              	100.00%		Q5JFV8              	100.00%
A8J6V1              	22.62%		
Bootstrap support for A8J0R7 as seed ortholog is 80%.
Bootstrap support for Q5JFV8 as seed ortholog is 100%.

Group of orthologs #93. Best score 203 bits
Score difference with first non-orthologous sequence - C.reinhardtii:59 P.kodakaraensis:131

A8HNQ7              	100.00%		Q5JIK4              	100.00%
A8JFV6              	13.50%		
A8I208              	9.37%		
Bootstrap support for A8HNQ7 as seed ortholog is 96%.
Bootstrap support for Q5JIK4 as seed ortholog is 99%.

Group of orthologs #94. Best score 203 bits
Score difference with first non-orthologous sequence - C.reinhardtii:203 P.kodakaraensis:203

A8IA89              	100.00%		Q5JFR5              	100.00%
Bootstrap support for A8IA89 as seed ortholog is 100%.
Bootstrap support for Q5JFR5 as seed ortholog is 100%.

Group of orthologs #95. Best score 202 bits
Score difference with first non-orthologous sequence - C.reinhardtii:202 P.kodakaraensis:88

A8I718              	100.00%		Q5JDV2              	100.00%
A8IEM7              	15.05%		
Bootstrap support for A8I718 as seed ortholog is 100%.
Bootstrap support for Q5JDV2 as seed ortholog is 97%.

Group of orthologs #96. Best score 201 bits
Score difference with first non-orthologous sequence - C.reinhardtii:26 P.kodakaraensis:111

A8J0Z1              	100.00%		Q5JF51              	100.00%
                    	       		Q5JHU0              	25.35%
                    	       		Q5JE21              	8.16%
Bootstrap support for A8J0Z1 as seed ortholog is 69%.
Alternative seed ortholog is A8HQU6 (26 bits away from this cluster)
Bootstrap support for Q5JF51 as seed ortholog is 99%.

Group of orthologs #97. Best score 201 bits
Score difference with first non-orthologous sequence - C.reinhardtii:201 P.kodakaraensis:201

A8HPT2              	100.00%		Q5JH81              	100.00%
Bootstrap support for A8HPT2 as seed ortholog is 100%.
Bootstrap support for Q5JH81 as seed ortholog is 100%.

Group of orthologs #98. Best score 201 bits
Score difference with first non-orthologous sequence - C.reinhardtii:201 P.kodakaraensis:201

A8IW34              	100.00%		Q5JIE6              	100.00%
Bootstrap support for A8IW34 as seed ortholog is 100%.
Bootstrap support for Q5JIE6 as seed ortholog is 100%.

Group of orthologs #99. Best score 199 bits
Score difference with first non-orthologous sequence - C.reinhardtii:155 P.kodakaraensis:199

A8J5A6              	100.00%		Q5JFX8              	100.00%
A8HP06              	7.83%		
Bootstrap support for A8J5A6 as seed ortholog is 99%.
Bootstrap support for Q5JFX8 as seed ortholog is 100%.

Group of orthologs #100. Best score 199 bits
Score difference with first non-orthologous sequence - C.reinhardtii:122 P.kodakaraensis:199

A8J275              	100.00%		Q5JIR6              	100.00%
Bootstrap support for A8J275 as seed ortholog is 100%.
Bootstrap support for Q5JIR6 as seed ortholog is 100%.

Group of orthologs #101. Best score 198 bits
Score difference with first non-orthologous sequence - C.reinhardtii:198 P.kodakaraensis:198

A8J4R9              	100.00%		Q5JF06              	100.00%
Q8W4V3              	50.91%		
A8JFK4              	46.09%		
Bootstrap support for A8J4R9 as seed ortholog is 100%.
Bootstrap support for Q5JF06 as seed ortholog is 100%.

Group of orthologs #102. Best score 197 bits
Score difference with first non-orthologous sequence - C.reinhardtii:197 P.kodakaraensis:197

A8HXT4              	100.00%		Q5JIF8              	100.00%
A8J979              	5.11%		
Bootstrap support for A8HXT4 as seed ortholog is 100%.
Bootstrap support for Q5JIF8 as seed ortholog is 100%.

Group of orthologs #103. Best score 197 bits
Score difference with first non-orthologous sequence - C.reinhardtii:197 P.kodakaraensis:197

A8IBN0              	100.00%		Q9YGB4              	100.00%
Bootstrap support for A8IBN0 as seed ortholog is 100%.
Bootstrap support for Q9YGB4 as seed ortholog is 100%.

Group of orthologs #104. Best score 196 bits
Score difference with first non-orthologous sequence - C.reinhardtii:12 P.kodakaraensis:88

A8IC07              	100.00%		Q5JDD8              	100.00%
Bootstrap support for A8IC07 as seed ortholog is 64%.
Alternative seed ortholog is A8JDN9 (12 bits away from this cluster)
Bootstrap support for Q5JDD8 as seed ortholog is 99%.

Group of orthologs #105. Best score 195 bits
Score difference with first non-orthologous sequence - C.reinhardtii:143 P.kodakaraensis:127

A8ITJ3              	100.00%		Q5JG66              	100.00%
Bootstrap support for A8ITJ3 as seed ortholog is 100%.
Bootstrap support for Q5JG66 as seed ortholog is 99%.

Group of orthologs #106. Best score 195 bits
Score difference with first non-orthologous sequence - C.reinhardtii:195 P.kodakaraensis:195

A8JF71              	100.00%		Q5JDV8              	100.00%
Bootstrap support for A8JF71 as seed ortholog is 100%.
Bootstrap support for Q5JDV8 as seed ortholog is 100%.

Group of orthologs #107. Best score 194 bits
Score difference with first non-orthologous sequence - C.reinhardtii:42 P.kodakaraensis:194

A8ITF6              	100.00%		Q5JHP3              	100.00%
Bootstrap support for A8ITF6 as seed ortholog is 86%.
Bootstrap support for Q5JHP3 as seed ortholog is 100%.

Group of orthologs #108. Best score 193 bits
Score difference with first non-orthologous sequence - C.reinhardtii:193 P.kodakaraensis:193

A8I982              	100.00%		Q5JH43              	100.00%
Bootstrap support for A8I982 as seed ortholog is 100%.
Bootstrap support for Q5JH43 as seed ortholog is 100%.

Group of orthologs #109. Best score 192 bits
Score difference with first non-orthologous sequence - C.reinhardtii:192 P.kodakaraensis:192

A8HZX4              	100.00%		Q5JGM9              	100.00%
                    	       		Q5JF26              	15.27%
Bootstrap support for A8HZX4 as seed ortholog is 100%.
Bootstrap support for Q5JGM9 as seed ortholog is 100%.

Group of orthologs #110. Best score 192 bits
Score difference with first non-orthologous sequence - C.reinhardtii:83 P.kodakaraensis:192

A8J5K4              	100.00%		Q5JFN0              	100.00%
A8IID0              	22.01%		
Bootstrap support for A8J5K4 as seed ortholog is 99%.
Bootstrap support for Q5JFN0 as seed ortholog is 100%.

Group of orthologs #111. Best score 191 bits
Score difference with first non-orthologous sequence - C.reinhardtii:191 P.kodakaraensis:191

A8JF79              	100.00%		Q5JGB4              	100.00%
Bootstrap support for A8JF79 as seed ortholog is 100%.
Bootstrap support for Q5JGB4 as seed ortholog is 100%.

Group of orthologs #112. Best score 190 bits
Score difference with first non-orthologous sequence - C.reinhardtii:190 P.kodakaraensis:190

A8J1S8              	100.00%		Q5JFP1              	100.00%
Bootstrap support for A8J1S8 as seed ortholog is 100%.
Bootstrap support for Q5JFP1 as seed ortholog is 100%.

Group of orthologs #113. Best score 189 bits
Score difference with first non-orthologous sequence - C.reinhardtii:12 P.kodakaraensis:189

A8J6M3              	100.00%		Q5JE24              	100.00%
                    	       		Q6F598              	5.24%
Bootstrap support for A8J6M3 as seed ortholog is 57%.
Alternative seed ortholog is A8II62 (12 bits away from this cluster)
Bootstrap support for Q5JE24 as seed ortholog is 100%.

Group of orthologs #114. Best score 188 bits
Score difference with first non-orthologous sequence - C.reinhardtii:46 P.kodakaraensis:188

A8IPI7              	100.00%		Q5JEZ2              	100.00%
                    	       		Q5JF48              	15.01%
Bootstrap support for A8IPI7 as seed ortholog is 89%.
Bootstrap support for Q5JEZ2 as seed ortholog is 100%.

Group of orthologs #115. Best score 188 bits
Score difference with first non-orthologous sequence - C.reinhardtii:188 P.kodakaraensis:188

A8I0J4              	100.00%		Q5JID0              	100.00%
Bootstrap support for A8I0J4 as seed ortholog is 100%.
Bootstrap support for Q5JID0 as seed ortholog is 100%.

Group of orthologs #116. Best score 188 bits
Score difference with first non-orthologous sequence - C.reinhardtii:82 P.kodakaraensis:188

A8JD83              	100.00%		Q5JGG5              	100.00%
Bootstrap support for A8JD83 as seed ortholog is 99%.
Bootstrap support for Q5JGG5 as seed ortholog is 100%.

Group of orthologs #117. Best score 186 bits
Score difference with first non-orthologous sequence - C.reinhardtii:186 P.kodakaraensis:186

A8IWJ3              	100.00%		Q5JDG3              	100.00%
Bootstrap support for A8IWJ3 as seed ortholog is 100%.
Bootstrap support for Q5JDG3 as seed ortholog is 100%.

Group of orthologs #118. Best score 186 bits
Score difference with first non-orthologous sequence - C.reinhardtii:186 P.kodakaraensis:186

A8J0I0              	100.00%		Q5JDI0              	100.00%
Bootstrap support for A8J0I0 as seed ortholog is 100%.
Bootstrap support for Q5JDI0 as seed ortholog is 100%.

Group of orthologs #119. Best score 186 bits
Score difference with first non-orthologous sequence - C.reinhardtii:186 P.kodakaraensis:186

A8J463              	100.00%		Q5JFX1              	100.00%
Bootstrap support for A8J463 as seed ortholog is 100%.
Bootstrap support for Q5JFX1 as seed ortholog is 100%.

Group of orthologs #120. Best score 186 bits
Score difference with first non-orthologous sequence - C.reinhardtii:109 P.kodakaraensis:186

A8JGK6              	100.00%		Q5JH24              	100.00%
Bootstrap support for A8JGK6 as seed ortholog is 99%.
Bootstrap support for Q5JH24 as seed ortholog is 100%.

Group of orthologs #121. Best score 183 bits
Score difference with first non-orthologous sequence - C.reinhardtii:28 P.kodakaraensis:183

Q9SNV7              	100.00%		Q5JE76              	100.00%
A8HZ73              	8.10%		
A8IAJ1              	6.62%		
Bootstrap support for Q9SNV7 as seed ortholog is 80%.
Bootstrap support for Q5JE76 as seed ortholog is 100%.

Group of orthologs #122. Best score 181 bits
Score difference with first non-orthologous sequence - C.reinhardtii:131 P.kodakaraensis:85

A8J3D3              	100.00%		Q5JFU6              	100.00%
Bootstrap support for A8J3D3 as seed ortholog is 99%.
Bootstrap support for Q5JFU6 as seed ortholog is 98%.

Group of orthologs #123. Best score 180 bits
Score difference with first non-orthologous sequence - C.reinhardtii:117 P.kodakaraensis:180

A8IRQ1              	100.00%		Q5JH26              	100.00%
Bootstrap support for A8IRQ1 as seed ortholog is 99%.
Bootstrap support for Q5JH26 as seed ortholog is 100%.

Group of orthologs #124. Best score 180 bits
Score difference with first non-orthologous sequence - C.reinhardtii:118 P.kodakaraensis:180

A8J768              	100.00%		Q5JJF3              	100.00%
Bootstrap support for A8J768 as seed ortholog is 100%.
Bootstrap support for Q5JJF3 as seed ortholog is 100%.

Group of orthologs #125. Best score 179 bits
Score difference with first non-orthologous sequence - C.reinhardtii:179 P.kodakaraensis:179

A8JG03              	100.00%		Q5JFV6              	100.00%
Bootstrap support for A8JG03 as seed ortholog is 100%.
Bootstrap support for Q5JFV6 as seed ortholog is 100%.

Group of orthologs #126. Best score 178 bits
Score difference with first non-orthologous sequence - C.reinhardtii:44 P.kodakaraensis:178

A8JHU6              	100.00%		Q76CZ2              	100.00%
Bootstrap support for A8JHU6 as seed ortholog is 89%.
Bootstrap support for Q76CZ2 as seed ortholog is 100%.

Group of orthologs #127. Best score 177 bits
Score difference with first non-orthologous sequence - C.reinhardtii:95 P.kodakaraensis:54

A8J3F9              	100.00%		Q5JI97              	100.00%
Bootstrap support for A8J3F9 as seed ortholog is 99%.
Bootstrap support for Q5JI97 as seed ortholog is 90%.

Group of orthologs #128. Best score 177 bits
Score difference with first non-orthologous sequence - C.reinhardtii:177 P.kodakaraensis:177

A8J599              	100.00%		Q9YGA9              	100.00%
Bootstrap support for A8J599 as seed ortholog is 100%.
Bootstrap support for Q9YGA9 as seed ortholog is 100%.

Group of orthologs #129. Best score 176 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:176

A8J9E6              	100.00%		Q5JGD1              	100.00%
Bootstrap support for A8J9E6 as seed ortholog is 91%.
Bootstrap support for Q5JGD1 as seed ortholog is 100%.

Group of orthologs #130. Best score 176 bits
Score difference with first non-orthologous sequence - C.reinhardtii:176 P.kodakaraensis:176

A8JDR3              	100.00%		Q5JJ43              	100.00%
Bootstrap support for A8JDR3 as seed ortholog is 100%.
Bootstrap support for Q5JJ43 as seed ortholog is 100%.

Group of orthologs #131. Best score 173 bits
Score difference with first non-orthologous sequence - C.reinhardtii:173 P.kodakaraensis:173

A8I8E3              	100.00%		Q5JH82              	100.00%
Bootstrap support for A8I8E3 as seed ortholog is 100%.
Bootstrap support for Q5JH82 as seed ortholog is 100%.

Group of orthologs #132. Best score 173 bits
Score difference with first non-orthologous sequence - C.reinhardtii:96 P.kodakaraensis:173

A8J133              	100.00%		Q5JIY3              	100.00%
Bootstrap support for A8J133 as seed ortholog is 99%.
Bootstrap support for Q5JIY3 as seed ortholog is 100%.

Group of orthologs #133. Best score 166 bits
Score difference with first non-orthologous sequence - C.reinhardtii:90 P.kodakaraensis:166

A8JI52              	100.00%		Q5JGS4              	100.00%
                    	       		Q5JCX7              	6.70%
Bootstrap support for A8JI52 as seed ortholog is 99%.
Bootstrap support for Q5JGS4 as seed ortholog is 100%.

Group of orthologs #134. Best score 166 bits
Score difference with first non-orthologous sequence - C.reinhardtii:166 P.kodakaraensis:166

A8IS51              	100.00%		Q5JH57              	100.00%
Bootstrap support for A8IS51 as seed ortholog is 100%.
Bootstrap support for Q5JH57 as seed ortholog is 100%.

Group of orthologs #135. Best score 166 bits
Score difference with first non-orthologous sequence - C.reinhardtii:10 P.kodakaraensis:166

A8JCC5              	100.00%		Q5JGE1              	100.00%
Bootstrap support for A8JCC5 as seed ortholog is 64%.
Alternative seed ortholog is A8HX47 (10 bits away from this cluster)
Bootstrap support for Q5JGE1 as seed ortholog is 100%.

Group of orthologs #136. Best score 165 bits
Score difference with first non-orthologous sequence - C.reinhardtii:84 P.kodakaraensis:165

A8ICL5              	100.00%		Q5JIB3              	100.00%
Bootstrap support for A8ICL5 as seed ortholog is 97%.
Bootstrap support for Q5JIB3 as seed ortholog is 100%.

Group of orthologs #137. Best score 165 bits
Score difference with first non-orthologous sequence - C.reinhardtii:165 P.kodakaraensis:165

A8IB25              	100.00%		Q5JJD2              	100.00%
Bootstrap support for A8IB25 as seed ortholog is 100%.
Bootstrap support for Q5JJD2 as seed ortholog is 100%.

Group of orthologs #138. Best score 165 bits
Score difference with first non-orthologous sequence - C.reinhardtii:62 P.kodakaraensis:165

A8IE44              	100.00%		Q5JIR7              	100.00%
Bootstrap support for A8IE44 as seed ortholog is 98%.
Bootstrap support for Q5JIR7 as seed ortholog is 100%.

Group of orthologs #139. Best score 163 bits
Score difference with first non-orthologous sequence - C.reinhardtii:80 P.kodakaraensis:163

A8J6E9              	100.00%		Q5JIG9              	100.00%
A8HNY7              	53.67%		Q5JDD3              	16.63%
                    	       		Q5JG70              	12.58%
Bootstrap support for A8J6E9 as seed ortholog is 99%.
Bootstrap support for Q5JIG9 as seed ortholog is 100%.

Group of orthologs #140. Best score 163 bits
Score difference with first non-orthologous sequence - C.reinhardtii:163 P.kodakaraensis:163

A8JE06              	100.00%		Q5JFN4              	100.00%
Bootstrap support for A8JE06 as seed ortholog is 100%.
Bootstrap support for Q5JFN4 as seed ortholog is 100%.

Group of orthologs #141. Best score 162 bits
Score difference with first non-orthologous sequence - C.reinhardtii:162 P.kodakaraensis:162

A8J5Q4              	100.00%		Q5JDR0              	100.00%
Bootstrap support for A8J5Q4 as seed ortholog is 100%.
Bootstrap support for Q5JDR0 as seed ortholog is 100%.

Group of orthologs #142. Best score 161 bits
Score difference with first non-orthologous sequence - C.reinhardtii:79 P.kodakaraensis:161

A8HQ81              	100.00%		Q5JJG1              	100.00%
Bootstrap support for A8HQ81 as seed ortholog is 99%.
Bootstrap support for Q5JJG1 as seed ortholog is 100%.

Group of orthologs #143. Best score 160 bits
Score difference with first non-orthologous sequence - C.reinhardtii:160 P.kodakaraensis:160

A8J387              	100.00%		Q5JGH7              	100.00%
Bootstrap support for A8J387 as seed ortholog is 100%.
Bootstrap support for Q5JGH7 as seed ortholog is 100%.

Group of orthologs #144. Best score 158 bits
Score difference with first non-orthologous sequence - C.reinhardtii:33 P.kodakaraensis:158

A8JFY9              	100.00%		Q5JDI4              	100.00%
Bootstrap support for A8JFY9 as seed ortholog is 82%.
Bootstrap support for Q5JDI4 as seed ortholog is 100%.

Group of orthologs #145. Best score 157 bits
Score difference with first non-orthologous sequence - C.reinhardtii:157 P.kodakaraensis:157

A8IMP6              	100.00%		Q5JJG0              	100.00%
Bootstrap support for A8IMP6 as seed ortholog is 100%.
Bootstrap support for Q5JJG0 as seed ortholog is 100%.

Group of orthologs #146. Best score 157 bits
Score difference with first non-orthologous sequence - C.reinhardtii:157 P.kodakaraensis:157

A8J9T5              	100.00%		Q5JD25              	100.00%
Bootstrap support for A8J9T5 as seed ortholog is 100%.
Bootstrap support for Q5JD25 as seed ortholog is 100%.

Group of orthologs #147. Best score 157 bits
Score difference with first non-orthologous sequence - C.reinhardtii:157 P.kodakaraensis:157

A8JH48              	100.00%		Q5JFT3              	100.00%
Bootstrap support for A8JH48 as seed ortholog is 100%.
Bootstrap support for Q5JFT3 as seed ortholog is 100%.

Group of orthologs #148. Best score 156 bits
Score difference with first non-orthologous sequence - C.reinhardtii:156 P.kodakaraensis:156

A8HMX2              	100.00%		Q5JFY6              	100.00%
Bootstrap support for A8HMX2 as seed ortholog is 100%.
Bootstrap support for Q5JFY6 as seed ortholog is 100%.

Group of orthologs #149. Best score 156 bits
Score difference with first non-orthologous sequence - C.reinhardtii:156 P.kodakaraensis:156

A8HMQ7              	100.00%		Q5JI54              	100.00%
Bootstrap support for A8HMQ7 as seed ortholog is 100%.
Bootstrap support for Q5JI54 as seed ortholog is 100%.

Group of orthologs #150. Best score 155 bits
Score difference with first non-orthologous sequence - C.reinhardtii:25 P.kodakaraensis:155

Q75NZ3              	100.00%		Q5JHV7              	100.00%
A8IYW1              	24.90%		
A8J4Q0              	23.92%		
Bootstrap support for Q75NZ3 as seed ortholog is 75%.
Bootstrap support for Q5JHV7 as seed ortholog is 100%.

Group of orthologs #151. Best score 155 bits
Score difference with first non-orthologous sequence - C.reinhardtii:155 P.kodakaraensis:155

A8IGY1              	100.00%		Q5JGJ4              	100.00%
Bootstrap support for A8IGY1 as seed ortholog is 100%.
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.

Group of orthologs #152. Best score 154 bits
Score difference with first non-orthologous sequence - C.reinhardtii:47 P.kodakaraensis:154

A8J9K0              	100.00%		Q5JJ78              	100.00%
Bootstrap support for A8J9K0 as seed ortholog is 99%.
Bootstrap support for Q5JJ78 as seed ortholog is 100%.

Group of orthologs #153. Best score 153 bits
Score difference with first non-orthologous sequence - C.reinhardtii:67 P.kodakaraensis:153

A8I2K8              	100.00%		Q5JFI2              	100.00%
Bootstrap support for A8I2K8 as seed ortholog is 94%.
Bootstrap support for Q5JFI2 as seed ortholog is 100%.

Group of orthologs #154. Best score 153 bits
Score difference with first non-orthologous sequence - C.reinhardtii:19 P.kodakaraensis:27

A8IEW6              	100.00%		Q5JIE4              	100.00%
Bootstrap support for A8IEW6 as seed ortholog is 65%.
Alternative seed ortholog is A8J1H6 (19 bits away from this cluster)
Bootstrap support for Q5JIE4 as seed ortholog is 72%.
Alternative seed ortholog is Q5JJ05 (27 bits away from this cluster)

Group of orthologs #155. Best score 153 bits
Score difference with first non-orthologous sequence - C.reinhardtii:153 P.kodakaraensis:153

A8J339              	100.00%		Q5JIH2              	100.00%
Bootstrap support for A8J339 as seed ortholog is 100%.
Bootstrap support for Q5JIH2 as seed ortholog is 100%.

Group of orthologs #156. Best score 152 bits
Score difference with first non-orthologous sequence - C.reinhardtii:79 P.kodakaraensis:152

A8IJQ4              	100.00%		Q5JE20              	100.00%
Bootstrap support for A8IJQ4 as seed ortholog is 99%.
Bootstrap support for Q5JE20 as seed ortholog is 100%.

Group of orthologs #157. Best score 152 bits
Score difference with first non-orthologous sequence - C.reinhardtii:152 P.kodakaraensis:152

A8JB39              	100.00%		Q5JJB1              	100.00%
Bootstrap support for A8JB39 as seed ortholog is 100%.
Bootstrap support for Q5JJB1 as seed ortholog is 100%.

Group of orthologs #158. Best score 151 bits
Score difference with first non-orthologous sequence - C.reinhardtii:55 P.kodakaraensis:151

A8ITK3              	100.00%		Q5JEM6              	100.00%
Bootstrap support for A8ITK3 as seed ortholog is 92%.
Bootstrap support for Q5JEM6 as seed ortholog is 100%.

Group of orthologs #159. Best score 151 bits
Score difference with first non-orthologous sequence - C.reinhardtii:151 P.kodakaraensis:151

A8J3U8              	100.00%		Q5JHP2              	100.00%
Bootstrap support for A8J3U8 as seed ortholog is 100%.
Bootstrap support for Q5JHP2 as seed ortholog is 100%.

Group of orthologs #160. Best score 150 bits
Score difference with first non-orthologous sequence - C.reinhardtii:150 P.kodakaraensis:69

A8HP28              	100.00%		Q9YGB2              	100.00%
Bootstrap support for A8HP28 as seed ortholog is 100%.
Bootstrap support for Q9YGB2 as seed ortholog is 98%.

Group of orthologs #161. Best score 149 bits
Score difference with first non-orthologous sequence - C.reinhardtii:149 P.kodakaraensis:149

A8J2I5              	100.00%		Q5JE04              	100.00%
Bootstrap support for A8J2I5 as seed ortholog is 100%.
Bootstrap support for Q5JE04 as seed ortholog is 100%.

Group of orthologs #162. Best score 149 bits
Score difference with first non-orthologous sequence - C.reinhardtii:149 P.kodakaraensis:149

A8JE40              	100.00%		Q5JG67              	100.00%
Bootstrap support for A8JE40 as seed ortholog is 100%.
Bootstrap support for Q5JG67 as seed ortholog is 100%.

Group of orthologs #163. Best score 146 bits
Score difference with first non-orthologous sequence - C.reinhardtii:146 P.kodakaraensis:146

A8J9H8              	100.00%		Q5JGR7              	100.00%
A8JH12              	43.21%		
Bootstrap support for A8J9H8 as seed ortholog is 100%.
Bootstrap support for Q5JGR7 as seed ortholog is 100%.

Group of orthologs #164. Best score 146 bits
Score difference with first non-orthologous sequence - C.reinhardtii:146 P.kodakaraensis:146

A8HME4              	100.00%		Q5JJG8              	100.00%
Bootstrap support for A8HME4 as seed ortholog is 100%.
Bootstrap support for Q5JJG8 as seed ortholog is 100%.

Group of orthologs #165. Best score 146 bits
Score difference with first non-orthologous sequence - C.reinhardtii:6 P.kodakaraensis:146

A8JGX0              	100.00%		Q5JFG9              	100.00%
Bootstrap support for A8JGX0 as seed ortholog is 44%.
Alternative seed ortholog is A8HYM8 (6 bits away from this cluster)
Bootstrap support for Q5JFG9 as seed ortholog is 100%.

Group of orthologs #166. Best score 145 bits
Score difference with first non-orthologous sequence - C.reinhardtii:145 P.kodakaraensis:145

Q948T5              	100.00%		Q5JJ45              	100.00%
A8IG47              	29.22%		
A8HVX7              	15.88%		
Bootstrap support for Q948T5 as seed ortholog is 100%.
Bootstrap support for Q5JJ45 as seed ortholog is 100%.

Group of orthologs #167. Best score 145 bits
Score difference with first non-orthologous sequence - C.reinhardtii:145 P.kodakaraensis:145

A8I8Z1              	100.00%		Q5JD31              	100.00%
Bootstrap support for A8I8Z1 as seed ortholog is 100%.
Bootstrap support for Q5JD31 as seed ortholog is 100%.

Group of orthologs #168. Best score 144 bits
Score difference with first non-orthologous sequence - C.reinhardtii:18 P.kodakaraensis:28

A8JA68              	100.00%		Q5JFM9              	100.00%
Bootstrap support for A8JA68 as seed ortholog is 70%.
Alternative seed ortholog is A8JGW6 (18 bits away from this cluster)
Bootstrap support for Q5JFM9 as seed ortholog is 81%.

Group of orthologs #169. Best score 142 bits
Score difference with first non-orthologous sequence - C.reinhardtii:142 P.kodakaraensis:142

A8J149              	100.00%		Q5JIB9              	100.00%
Bootstrap support for A8J149 as seed ortholog is 100%.
Bootstrap support for Q5JIB9 as seed ortholog is 100%.

Group of orthologs #170. Best score 141 bits
Score difference with first non-orthologous sequence - C.reinhardtii:141 P.kodakaraensis:141

A8ICN7              	100.00%		Q5JGC8              	100.00%
A8HVM3              	13.53%		
Bootstrap support for A8ICN7 as seed ortholog is 100%.
Bootstrap support for Q5JGC8 as seed ortholog is 100%.

Group of orthologs #171. Best score 141 bits
Score difference with first non-orthologous sequence - C.reinhardtii:141 P.kodakaraensis:141

A8I4P5              	100.00%		Q5JDH5              	100.00%
Bootstrap support for A8I4P5 as seed ortholog is 100%.
Bootstrap support for Q5JDH5 as seed ortholog is 100%.

Group of orthologs #172. Best score 141 bits
Score difference with first non-orthologous sequence - C.reinhardtii:141 P.kodakaraensis:141

A8IZ93              	100.00%		O52958              	100.00%
Bootstrap support for A8IZ93 as seed ortholog is 100%.
Bootstrap support for O52958 as seed ortholog is 100%.

Group of orthologs #173. Best score 139 bits
Score difference with first non-orthologous sequence - C.reinhardtii:139 P.kodakaraensis:139

A8IST3              	100.00%		Q5JDS2              	100.00%
A8J1K0              	55.77%		
A8J9X3              	46.56%		
Bootstrap support for A8IST3 as seed ortholog is 100%.
Bootstrap support for Q5JDS2 as seed ortholog is 100%.

Group of orthologs #174. Best score 139 bits
Score difference with first non-orthologous sequence - C.reinhardtii:139 P.kodakaraensis:139

A8J0N3              	100.00%		Q5JFR0              	100.00%
Bootstrap support for A8J0N3 as seed ortholog is 100%.
Bootstrap support for Q5JFR0 as seed ortholog is 100%.

Group of orthologs #175. Best score 139 bits
Score difference with first non-orthologous sequence - C.reinhardtii:139 P.kodakaraensis:139

A8J3U1              	100.00%		Q5JJ64              	100.00%
Bootstrap support for A8J3U1 as seed ortholog is 100%.
Bootstrap support for Q5JJ64 as seed ortholog is 100%.

Group of orthologs #176. Best score 138 bits
Score difference with first non-orthologous sequence - C.reinhardtii:138 P.kodakaraensis:138

A8JC76              	100.00%		Q5JEL0              	100.00%
Bootstrap support for A8JC76 as seed ortholog is 100%.
Bootstrap support for Q5JEL0 as seed ortholog is 100%.

Group of orthologs #177. Best score 137 bits
Score difference with first non-orthologous sequence - C.reinhardtii:70 P.kodakaraensis:137

A8HZM0              	100.00%		Q5JFM8              	100.00%
Bootstrap support for A8HZM0 as seed ortholog is 94%.
Bootstrap support for Q5JFM8 as seed ortholog is 100%.

Group of orthologs #178. Best score 137 bits
Score difference with first non-orthologous sequence - C.reinhardtii:70 P.kodakaraensis:137

A8J493              	100.00%		Q5JDH3              	100.00%
Bootstrap support for A8J493 as seed ortholog is 99%.
Bootstrap support for Q5JDH3 as seed ortholog is 100%.

Group of orthologs #179. Best score 137 bits
Score difference with first non-orthologous sequence - C.reinhardtii:25 P.kodakaraensis:137

A8JDN2              	100.00%		Q5JH68              	100.00%
Bootstrap support for A8JDN2 as seed ortholog is 80%.
Bootstrap support for Q5JH68 as seed ortholog is 100%.

Group of orthologs #180. Best score 137 bits
Score difference with first non-orthologous sequence - C.reinhardtii:54 P.kodakaraensis:137

Q6S7R7              	100.00%		Q5JGE0              	100.00%
Bootstrap support for Q6S7R7 as seed ortholog is 98%.
Bootstrap support for Q5JGE0 as seed ortholog is 100%.

Group of orthologs #181. Best score 136 bits
Score difference with first non-orthologous sequence - C.reinhardtii:136 P.kodakaraensis:136

A8I826              	100.00%		Q5JH53              	100.00%
Bootstrap support for A8I826 as seed ortholog is 100%.
Bootstrap support for Q5JH53 as seed ortholog is 100%.

Group of orthologs #182. Best score 136 bits
Score difference with first non-orthologous sequence - C.reinhardtii:136 P.kodakaraensis:136

A8J3T4              	100.00%		Q5JER0              	100.00%
Bootstrap support for A8J3T4 as seed ortholog is 100%.
Bootstrap support for Q5JER0 as seed ortholog is 100%.

Group of orthologs #183. Best score 133 bits
Score difference with first non-orthologous sequence - C.reinhardtii:133 P.kodakaraensis:133

A8J4D3              	100.00%		Q5JER7              	100.00%
A8IYY5              	31.75%		
A8IZ00              	17.91%		
Bootstrap support for A8J4D3 as seed ortholog is 100%.
Bootstrap support for Q5JER7 as seed ortholog is 100%.

Group of orthologs #184. Best score 133 bits
Score difference with first non-orthologous sequence - C.reinhardtii:133 P.kodakaraensis:82

A8J7D9              	100.00%		Q5JHS7              	100.00%
Bootstrap support for A8J7D9 as seed ortholog is 100%.
Bootstrap support for Q5JHS7 as seed ortholog is 99%.

Group of orthologs #185. Best score 132 bits
Score difference with first non-orthologous sequence - C.reinhardtii:132 P.kodakaraensis:132

A8JAR5              	100.00%		Q5JEW3              	100.00%
Bootstrap support for A8JAR5 as seed ortholog is 100%.
Bootstrap support for Q5JEW3 as seed ortholog is 100%.

Group of orthologs #186. Best score 132 bits
Score difference with first non-orthologous sequence - C.reinhardtii:60 P.kodakaraensis:132

A8JDP4              	100.00%		Q5JJG4              	100.00%
Bootstrap support for A8JDP4 as seed ortholog is 98%.
Bootstrap support for Q5JJG4 as seed ortholog is 100%.

Group of orthologs #187. Best score 131 bits
Score difference with first non-orthologous sequence - C.reinhardtii:131 P.kodakaraensis:131

A8IJX8              	100.00%		Q52366              	100.00%
Bootstrap support for A8IJX8 as seed ortholog is 100%.
Bootstrap support for Q52366 as seed ortholog is 100%.

Group of orthologs #188. Best score 131 bits
Score difference with first non-orthologous sequence - C.reinhardtii:131 P.kodakaraensis:31

A8J2N5              	100.00%		Q5JES4              	100.00%
Bootstrap support for A8J2N5 as seed ortholog is 100%.
Bootstrap support for Q5JES4 as seed ortholog is 86%.

Group of orthologs #189. Best score 131 bits
Score difference with first non-orthologous sequence - C.reinhardtii:10 P.kodakaraensis:131

A8J5M2              	100.00%		Q5JG47              	100.00%
Bootstrap support for A8J5M2 as seed ortholog is 60%.
Alternative seed ortholog is A8I1B6 (10 bits away from this cluster)
Bootstrap support for Q5JG47 as seed ortholog is 100%.

Group of orthologs #190. Best score 131 bits
Score difference with first non-orthologous sequence - C.reinhardtii:40 P.kodakaraensis:33

A8JFD5              	100.00%		Q5JEK8              	100.00%
Bootstrap support for A8JFD5 as seed ortholog is 83%.
Bootstrap support for Q5JEK8 as seed ortholog is 84%.

Group of orthologs #191. Best score 130 bits
Score difference with first non-orthologous sequence - C.reinhardtii:130 P.kodakaraensis:130

A8I2Q6              	100.00%		Q5JFN2              	100.00%
A8I2Q4              	86.85%		
A8JJP0              	81.64%		
A8JJN9              	42.19%		
A8JKB0              	40.55%		
Bootstrap support for A8I2Q6 as seed ortholog is 100%.
Bootstrap support for Q5JFN2 as seed ortholog is 100%.

Group of orthologs #192. Best score 130 bits
Score difference with first non-orthologous sequence - C.reinhardtii:13 P.kodakaraensis:11

A8I6B9              	100.00%		Q5JHE3              	100.00%
Q84X75              	5.97%		
Bootstrap support for A8I6B9 as seed ortholog is 63%.
Alternative seed ortholog is A8JDL8 (13 bits away from this cluster)
Bootstrap support for Q5JHE3 as seed ortholog is 65%.
Alternative seed ortholog is Q5JIX4 (11 bits away from this cluster)

Group of orthologs #193. Best score 129 bits
Score difference with first non-orthologous sequence - C.reinhardtii:34 P.kodakaraensis:129

A8J9W0              	100.00%		Q5JJF8              	100.00%
Bootstrap support for A8J9W0 as seed ortholog is 93%.
Bootstrap support for Q5JJF8 as seed ortholog is 100%.

Group of orthologs #194. Best score 128 bits
Score difference with first non-orthologous sequence - C.reinhardtii:67 P.kodakaraensis:45

Q8H6H9              	100.00%		Q5JCX6              	100.00%
                    	       		Q5JIA0              	25.48%
Bootstrap support for Q8H6H9 as seed ortholog is 98%.
Bootstrap support for Q5JCX6 as seed ortholog is 90%.

Group of orthologs #195. Best score 128 bits
Score difference with first non-orthologous sequence - C.reinhardtii:128 P.kodakaraensis:128

A8HUE0              	100.00%		Q5JGT4              	100.00%
Bootstrap support for A8HUE0 as seed ortholog is 100%.
Bootstrap support for Q5JGT4 as seed ortholog is 100%.

Group of orthologs #196. Best score 128 bits
Score difference with first non-orthologous sequence - C.reinhardtii:128 P.kodakaraensis:128

A8IA18              	100.00%		Q5JJG6              	100.00%
Bootstrap support for A8IA18 as seed ortholog is 100%.
Bootstrap support for Q5JJG6 as seed ortholog is 100%.

Group of orthologs #197. Best score 128 bits
Score difference with first non-orthologous sequence - C.reinhardtii:128 P.kodakaraensis:128

A8JG07              	100.00%		Q5JIA2              	100.00%
Bootstrap support for A8JG07 as seed ortholog is 100%.
Bootstrap support for Q5JIA2 as seed ortholog is 100%.

Group of orthologs #198. Best score 127 bits
Score difference with first non-orthologous sequence - C.reinhardtii:27 P.kodakaraensis:127

A8JBH0              	100.00%		Q5JEZ9              	100.00%
A8I872              	100.00%		Q5JH45              	100.00%
A8J6S4              	7.84%		
Bootstrap support for A8JBH0 as seed ortholog is 75%.
Bootstrap support for A8I872 as seed ortholog is 65%.
Alternative seed ortholog is A8IIQ5 (27 bits away from this cluster)
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.
Bootstrap support for Q5JH45 as seed ortholog is 100%.

Group of orthologs #199. Best score 126 bits
Score difference with first non-orthologous sequence - C.reinhardtii:126 P.kodakaraensis:126

A8HYD5              	100.00%		Q5JFJ9              	100.00%
Bootstrap support for A8HYD5 as seed ortholog is 100%.
Bootstrap support for Q5JFJ9 as seed ortholog is 100%.

Group of orthologs #200. Best score 126 bits
Score difference with first non-orthologous sequence - C.reinhardtii:42 P.kodakaraensis:126

A8HTK7              	100.00%		Q5JHR7              	100.00%
Bootstrap support for A8HTK7 as seed ortholog is 85%.
Bootstrap support for Q5JHR7 as seed ortholog is 100%.

Group of orthologs #201. Best score 126 bits
Score difference with first non-orthologous sequence - C.reinhardtii:52 P.kodakaraensis:126

A8J5Z0              	100.00%		Q5JH36              	100.00%
Bootstrap support for A8J5Z0 as seed ortholog is 96%.
Bootstrap support for Q5JH36 as seed ortholog is 100%.

Group of orthologs #202. Best score 124 bits
Score difference with first non-orthologous sequence - C.reinhardtii:46 P.kodakaraensis:124

A8IM89              	100.00%		Q5JGN1              	100.00%
                    	       		P58109              	62.12%
Bootstrap support for A8IM89 as seed ortholog is 93%.
Bootstrap support for Q5JGN1 as seed ortholog is 100%.

Group of orthologs #203. Best score 124 bits
Score difference with first non-orthologous sequence - C.reinhardtii:63 P.kodakaraensis:124

A8HVP2              	100.00%		Q5JJF1              	100.00%
Bootstrap support for A8HVP2 as seed ortholog is 99%.
Bootstrap support for Q5JJF1 as seed ortholog is 100%.

Group of orthologs #204. Best score 124 bits
Score difference with first non-orthologous sequence - C.reinhardtii:83 P.kodakaraensis:124

A8JE07              	100.00%		Q5JJG3              	100.00%
Bootstrap support for A8JE07 as seed ortholog is 99%.
Bootstrap support for Q5JJG3 as seed ortholog is 100%.

Group of orthologs #205. Best score 123 bits
Score difference with first non-orthologous sequence - C.reinhardtii:28 P.kodakaraensis:123

A8HM29              	100.00%		Q5JEU9              	100.00%
A8IVK4              	51.06%		
Bootstrap support for A8HM29 as seed ortholog is 78%.
Bootstrap support for Q5JEU9 as seed ortholog is 100%.

Group of orthologs #206. Best score 123 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:123

A8HZZ1              	100.00%		Q5JHM0              	100.00%
                    	       		Q5JJC2              	9.98%
Bootstrap support for A8HZZ1 as seed ortholog is 96%.
Bootstrap support for Q5JHM0 as seed ortholog is 100%.

Group of orthologs #207. Best score 123 bits
Score difference with first non-orthologous sequence - C.reinhardtii:123 P.kodakaraensis:123

A8IZ01              	100.00%		Q5JDP7              	100.00%
Bootstrap support for A8IZ01 as seed ortholog is 100%.
Bootstrap support for Q5JDP7 as seed ortholog is 100%.

Group of orthologs #208. Best score 123 bits
Score difference with first non-orthologous sequence - C.reinhardtii:123 P.kodakaraensis:123

A8JG68              	100.00%		Q5JFE7              	100.00%
Bootstrap support for A8JG68 as seed ortholog is 100%.
Bootstrap support for Q5JFE7 as seed ortholog is 100%.

Group of orthologs #209. Best score 122 bits
Score difference with first non-orthologous sequence - C.reinhardtii:122 P.kodakaraensis:122

A8HMC7              	100.00%		Q5JI34              	100.00%
A8J1N2              	11.41%		
A8J6W6              	10.41%		
A8HSY5              	6.63%		
Bootstrap support for A8HMC7 as seed ortholog is 100%.
Bootstrap support for Q5JI34 as seed ortholog is 100%.

Group of orthologs #210. Best score 122 bits
Score difference with first non-orthologous sequence - C.reinhardtii:122 P.kodakaraensis:122

Q2VA40              	100.00%		Q5JH18              	100.00%
A8IYK1              	49.67%		
Bootstrap support for Q2VA40 as seed ortholog is 100%.
Bootstrap support for Q5JH18 as seed ortholog is 100%.

Group of orthologs #211. Best score 122 bits
Score difference with first non-orthologous sequence - C.reinhardtii:122 P.kodakaraensis:13

Q8RVC7              	100.00%		Q5JG79              	100.00%
Bootstrap support for Q8RVC7 as seed ortholog is 100%.
Bootstrap support for Q5JG79 as seed ortholog is 66%.
Alternative seed ortholog is Q5JEB3 (13 bits away from this cluster)

Group of orthologs #212. Best score 121 bits
Score difference with first non-orthologous sequence - C.reinhardtii:121 P.kodakaraensis:121

A8HT82              	100.00%		Q5JIW4              	100.00%
                    	       		Q5JI77              	12.38%
Bootstrap support for A8HT82 as seed ortholog is 100%.
Bootstrap support for Q5JIW4 as seed ortholog is 100%.

Group of orthologs #213. Best score 121 bits
Score difference with first non-orthologous sequence - C.reinhardtii:67 P.kodakaraensis:121

A8JGF8              	100.00%		Q5JJF2              	100.00%
Bootstrap support for A8JGF8 as seed ortholog is 99%.
Bootstrap support for Q5JJF2 as seed ortholog is 100%.

Group of orthologs #214. Best score 119 bits
Score difference with first non-orthologous sequence - C.reinhardtii:26 P.kodakaraensis:119

A8I1A7              	100.00%		Q5JDJ9              	100.00%
                    	       		Q5JHL8              	18.61%
Bootstrap support for A8I1A7 as seed ortholog is 85%.
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.

Group of orthologs #215. Best score 119 bits
Score difference with first non-orthologous sequence - C.reinhardtii:119 P.kodakaraensis:119

A8J326              	100.00%		Q5JHB4              	100.00%
Bootstrap support for A8J326 as seed ortholog is 100%.
Bootstrap support for Q5JHB4 as seed ortholog is 100%.

Group of orthologs #216. Best score 117 bits
Score difference with first non-orthologous sequence - C.reinhardtii:117 P.kodakaraensis:117

A8J018              	100.00%		Q5JH96              	100.00%
Bootstrap support for A8J018 as seed ortholog is 100%.
Bootstrap support for Q5JH96 as seed ortholog is 100%.

Group of orthologs #217. Best score 116 bits
Score difference with first non-orthologous sequence - C.reinhardtii:116 P.kodakaraensis:116

A8J434              	100.00%		Q5JIZ7              	100.00%
A8IEE5              	45.83%		
A8ISA9              	43.10%		
A8JFA4              	7.76%		
Bootstrap support for A8J434 as seed ortholog is 100%.
Bootstrap support for Q5JIZ7 as seed ortholog is 100%.

Group of orthologs #218. Best score 115 bits
Score difference with first non-orthologous sequence - C.reinhardtii:115 P.kodakaraensis:115

A8JBD9              	100.00%		Q5JD70              	100.00%
                    	       		Q5JHN7              	7.02%
                    	       		Q5JEI4              	5.18%
Bootstrap support for A8JBD9 as seed ortholog is 100%.
Bootstrap support for Q5JD70 as seed ortholog is 100%.

Group of orthologs #219. Best score 115 bits
Score difference with first non-orthologous sequence - C.reinhardtii:115 P.kodakaraensis:115

A8HTA8              	100.00%		Q5JFU7              	100.00%
Bootstrap support for A8HTA8 as seed ortholog is 100%.
Bootstrap support for Q5JFU7 as seed ortholog is 100%.

Group of orthologs #220. Best score 114 bits
Score difference with first non-orthologous sequence - C.reinhardtii:114 P.kodakaraensis:114

A8HXS9              	100.00%		Q5JFV5              	100.00%
Bootstrap support for A8HXS9 as seed ortholog is 100%.
Bootstrap support for Q5JFV5 as seed ortholog is 100%.

Group of orthologs #221. Best score 114 bits
Score difference with first non-orthologous sequence - C.reinhardtii:114 P.kodakaraensis:8

Q6V9B0              	100.00%		Q5JGG0              	100.00%
Bootstrap support for Q6V9B0 as seed ortholog is 100%.
Bootstrap support for Q5JGG0 as seed ortholog is 64%.
Alternative seed ortholog is Q5JHU7 (8 bits away from this cluster)

Group of orthologs #222. Best score 113 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:113

A8J352              	100.00%		Q68BJ6              	100.00%
                    	       		Q68BJ7              	30.71%
                    	       		Q6I7B6              	26.78%
Bootstrap support for A8J352 as seed ortholog is 74%.
Alternative seed ortholog is A8J8Z1 (41 bits away from this cluster)
Bootstrap support for Q68BJ6 as seed ortholog is 100%.

Group of orthologs #223. Best score 113 bits
Score difference with first non-orthologous sequence - C.reinhardtii:113 P.kodakaraensis:113

A8IZK3              	100.00%		Q5JDI6              	100.00%
Bootstrap support for A8IZK3 as seed ortholog is 100%.
Bootstrap support for Q5JDI6 as seed ortholog is 100%.

Group of orthologs #224. Best score 113 bits
Score difference with first non-orthologous sequence - C.reinhardtii:113 P.kodakaraensis:113

A8IXB8              	100.00%		Q5JIF4              	100.00%
Bootstrap support for A8IXB8 as seed ortholog is 100%.
Bootstrap support for Q5JIF4 as seed ortholog is 100%.

Group of orthologs #225. Best score 113 bits
Score difference with first non-orthologous sequence - C.reinhardtii:37 P.kodakaraensis:113

A8J7Y2              	100.00%		Q5JEX2              	100.00%
Bootstrap support for A8J7Y2 as seed ortholog is 95%.
Bootstrap support for Q5JEX2 as seed ortholog is 100%.

Group of orthologs #226. Best score 112 bits
Score difference with first non-orthologous sequence - C.reinhardtii:2 P.kodakaraensis:112

A8JBH9              	100.00%		Q5JI09              	100.00%
A8J0B6              	21.77%		
A8IB19              	7.03%		
Bootstrap support for A8JBH9 as seed ortholog is 52%.
Alternative seed ortholog is A8JFJ4 (2 bits away from this cluster)
Bootstrap support for Q5JI09 as seed ortholog is 100%.

Group of orthologs #227. Best score 112 bits
Score difference with first non-orthologous sequence - C.reinhardtii:112 P.kodakaraensis:112

A8I403              	100.00%		Q5JGN5              	100.00%
Bootstrap support for A8I403 as seed ortholog is 100%.
Bootstrap support for Q5JGN5 as seed ortholog is 100%.

Group of orthologs #228. Best score 112 bits
Score difference with first non-orthologous sequence - C.reinhardtii:112 P.kodakaraensis:112

A8J4Z9              	100.00%		Q5JIW5              	100.00%
Bootstrap support for A8J4Z9 as seed ortholog is 100%.
Bootstrap support for Q5JIW5 as seed ortholog is 100%.

Group of orthologs #229. Best score 112 bits
Score difference with first non-orthologous sequence - C.reinhardtii:112 P.kodakaraensis:112

A8JBT7              	100.00%		Q5JGJ8              	100.00%
Bootstrap support for A8JBT7 as seed ortholog is 100%.
Bootstrap support for Q5JGJ8 as seed ortholog is 100%.

Group of orthologs #230. Best score 111 bits
Score difference with first non-orthologous sequence - C.reinhardtii:111 P.kodakaraensis:111

A8J914              	100.00%		Q5JGI1              	100.00%
A2PZC3              	95.18%		
A8IVU2              	55.76%		
A8J9H0              	30.59%		
Bootstrap support for A8J914 as seed ortholog is 100%.
Bootstrap support for Q5JGI1 as seed ortholog is 100%.

Group of orthologs #231. Best score 111 bits
Score difference with first non-orthologous sequence - C.reinhardtii:111 P.kodakaraensis:111

A8IB90              	100.00%		Q5JEW5              	100.00%
A8I7C5              	8.77%		
Bootstrap support for A8IB90 as seed ortholog is 100%.
Bootstrap support for Q5JEW5 as seed ortholog is 100%.

Group of orthologs #232. Best score 111 bits
Score difference with first non-orthologous sequence - C.reinhardtii:111 P.kodakaraensis:111

A8HSZ0              	100.00%		Q5JGZ7              	100.00%
Bootstrap support for A8HSZ0 as seed ortholog is 100%.
Bootstrap support for Q5JGZ7 as seed ortholog is 100%.

Group of orthologs #233. Best score 110 bits
Score difference with first non-orthologous sequence - C.reinhardtii:110 P.kodakaraensis:110

A8JB38              	100.00%		Q5JIP8              	100.00%
Bootstrap support for A8JB38 as seed ortholog is 100%.
Bootstrap support for Q5JIP8 as seed ortholog is 100%.

Group of orthologs #234. Best score 109 bits
Score difference with first non-orthologous sequence - C.reinhardtii:109 P.kodakaraensis:109

A8J0X4              	100.00%		Q5JFK1              	100.00%
A8J6J6              	14.80%		
Bootstrap support for A8J0X4 as seed ortholog is 100%.
Bootstrap support for Q5JFK1 as seed ortholog is 100%.

Group of orthologs #235. Best score 109 bits
Score difference with first non-orthologous sequence - C.reinhardtii:109 P.kodakaraensis:109

A8JEL2              	100.00%		Q5JEX8              	100.00%
A8HS63              	23.79%		
Bootstrap support for A8JEL2 as seed ortholog is 100%.
Bootstrap support for Q5JEX8 as seed ortholog is 100%.

Group of orthologs #236. Best score 109 bits
Score difference with first non-orthologous sequence - C.reinhardtii:60 P.kodakaraensis:109

A8HSU7              	100.00%		Q5JJE2              	100.00%
Bootstrap support for A8HSU7 as seed ortholog is 99%.
Bootstrap support for Q5JJE2 as seed ortholog is 100%.

Group of orthologs #237. Best score 109 bits
Score difference with first non-orthologous sequence - C.reinhardtii:109 P.kodakaraensis:109

A8I4F6              	100.00%		Q5JFT0              	100.00%
Bootstrap support for A8I4F6 as seed ortholog is 100%.
Bootstrap support for Q5JFT0 as seed ortholog is 100%.

Group of orthologs #238. Best score 109 bits
Score difference with first non-orthologous sequence - C.reinhardtii:109 P.kodakaraensis:109

A8IWF2              	100.00%		Q5JHN1              	100.00%
Bootstrap support for A8IWF2 as seed ortholog is 100%.
Bootstrap support for Q5JHN1 as seed ortholog is 100%.

Group of orthologs #239. Best score 108 bits
Score difference with first non-orthologous sequence - C.reinhardtii:108 P.kodakaraensis:108

A8IUW1              	100.00%		Q5JGC7              	100.00%
A8IUZ4              	67.50%		
A8IUW2              	66.74%		
A8HWC2              	27.04%		
A8HYN3              	25.08%		
A8HPY0              	18.43%		
Bootstrap support for A8IUW1 as seed ortholog is 100%.
Bootstrap support for Q5JGC7 as seed ortholog is 100%.

Group of orthologs #240. Best score 108 bits
Score difference with first non-orthologous sequence - C.reinhardtii:108 P.kodakaraensis:108

A8J4L8              	100.00%		Q5JF27              	100.00%
                    	       		Q5JFZ0              	12.76%
Bootstrap support for A8J4L8 as seed ortholog is 100%.
Bootstrap support for Q5JF27 as seed ortholog is 100%.

Group of orthologs #241. Best score 106 bits
Score difference with first non-orthologous sequence - C.reinhardtii:106 P.kodakaraensis:106

A8IF73              	100.00%		Q5JFR2              	100.00%
Bootstrap support for A8IF73 as seed ortholog is 100%.
Bootstrap support for Q5JFR2 as seed ortholog is 100%.

Group of orthologs #242. Best score 105 bits
Score difference with first non-orthologous sequence - C.reinhardtii:105 P.kodakaraensis:105

A8IST1              	100.00%		Q5JIM5              	100.00%
A8ISE8              	20.76%		Q5JIM4              	32.62%
                    	       		Q5JI36              	18.29%
                    	       		Q5JJ83              	7.41%
Bootstrap support for A8IST1 as seed ortholog is 100%.
Bootstrap support for Q5JIM5 as seed ortholog is 100%.

Group of orthologs #243. Best score 105 bits
Score difference with first non-orthologous sequence - C.reinhardtii:105 P.kodakaraensis:105

A8I795              	100.00%		Q5JEX4              	100.00%
Bootstrap support for A8I795 as seed ortholog is 100%.
Bootstrap support for Q5JEX4 as seed ortholog is 100%.

Group of orthologs #244. Best score 104 bits
Score difference with first non-orthologous sequence - C.reinhardtii:104 P.kodakaraensis:104

A8IJ71              	100.00%		Q5JHF7              	100.00%
                    	       		Q5JE68              	37.70%
Bootstrap support for A8IJ71 as seed ortholog is 100%.
Bootstrap support for Q5JHF7 as seed ortholog is 100%.

Group of orthologs #245. Best score 104 bits
Score difference with first non-orthologous sequence - C.reinhardtii:22 P.kodakaraensis:24

A8JCY9              	100.00%		Q5JI45              	100.00%
                    	       		Q5JGT2              	40.03%
Bootstrap support for A8JCY9 as seed ortholog is 76%.
Bootstrap support for Q5JI45 as seed ortholog is 83%.

Group of orthologs #246. Best score 104 bits
Score difference with first non-orthologous sequence - C.reinhardtii:6 P.kodakaraensis:104

A8IY20              	100.00%		Q5JI69              	100.00%
Bootstrap support for A8IY20 as seed ortholog is 53%.
Alternative seed ortholog is A8IB95 (6 bits away from this cluster)
Bootstrap support for Q5JI69 as seed ortholog is 100%.

Group of orthologs #247. Best score 104 bits
Score difference with first non-orthologous sequence - C.reinhardtii:104 P.kodakaraensis:104

A8J3Y6              	100.00%		Q5JFL7              	100.00%
Bootstrap support for A8J3Y6 as seed ortholog is 100%.
Bootstrap support for Q5JFL7 as seed ortholog is 100%.

Group of orthologs #248. Best score 103 bits
Score difference with first non-orthologous sequence - C.reinhardtii:24 P.kodakaraensis:103

A8ITM4              	100.00%		Q5JIB6              	100.00%
                    	       		Q5JH42              	22.07%
Bootstrap support for A8ITM4 as seed ortholog is 74%.
Alternative seed ortholog is A8J1Z0 (24 bits away from this cluster)
Bootstrap support for Q5JIB6 as seed ortholog is 100%.

Group of orthologs #249. Best score 103 bits
Score difference with first non-orthologous sequence - C.reinhardtii:103 P.kodakaraensis:103

A8IWF5              	100.00%		Q5JGT7              	100.00%
Bootstrap support for A8IWF5 as seed ortholog is 100%.
Bootstrap support for Q5JGT7 as seed ortholog is 100%.

Group of orthologs #250. Best score 103 bits
Score difference with first non-orthologous sequence - C.reinhardtii:103 P.kodakaraensis:103

A8IWA3              	100.00%		Q5JJ91              	100.00%
Bootstrap support for A8IWA3 as seed ortholog is 100%.
Bootstrap support for Q5JJ91 as seed ortholog is 100%.

Group of orthologs #251. Best score 103 bits
Score difference with first non-orthologous sequence - C.reinhardtii:103 P.kodakaraensis:103

A8J1Q1              	100.00%		Q5JIR1              	100.00%
Bootstrap support for A8J1Q1 as seed ortholog is 100%.
Bootstrap support for Q5JIR1 as seed ortholog is 100%.

Group of orthologs #252. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:52 P.kodakaraensis:51

A8I2V3              	100.00%		Q5JF30              	100.00%
A8JIT5              	48.32%		
Q9FE86              	46.98%		
Bootstrap support for A8I2V3 as seed ortholog is 97%.
Bootstrap support for Q5JF30 as seed ortholog is 97%.

Group of orthologs #253. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:15 P.kodakaraensis:102

A8HQA9              	100.00%		Q5JIE9              	100.00%
A8HMD4              	24.61%		
Bootstrap support for A8HQA9 as seed ortholog is 68%.
Alternative seed ortholog is A8J193 (15 bits away from this cluster)
Bootstrap support for Q5JIE9 as seed ortholog is 100%.

Group of orthologs #254. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:102 P.kodakaraensis:102

A8I5B9              	100.00%		Q5JGS7              	100.00%
Bootstrap support for A8I5B9 as seed ortholog is 100%.
Bootstrap support for Q5JGS7 as seed ortholog is 100%.

Group of orthologs #255. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:102 P.kodakaraensis:102

A8IGE2              	100.00%		Q5JE78              	100.00%
Bootstrap support for A8IGE2 as seed ortholog is 100%.
Bootstrap support for Q5JE78 as seed ortholog is 100%.

Group of orthologs #256. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:102 P.kodakaraensis:102

A8ILL5              	100.00%		Q5JE49              	100.00%
Bootstrap support for A8ILL5 as seed ortholog is 100%.
Bootstrap support for Q5JE49 as seed ortholog is 100%.

Group of orthologs #257. Best score 102 bits
Score difference with first non-orthologous sequence - C.reinhardtii:102 P.kodakaraensis:102

A8JAT8              	100.00%		Q5JHN5              	100.00%
Bootstrap support for A8JAT8 as seed ortholog is 100%.
Bootstrap support for Q5JHN5 as seed ortholog is 100%.

Group of orthologs #258. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:101

A8HP30              	100.00%		Q5JD32              	100.00%
Bootstrap support for A8HP30 as seed ortholog is 100%.
Bootstrap support for Q5JD32 as seed ortholog is 100%.

Group of orthologs #259. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:101

A8HMB6              	100.00%		Q5JJ82              	100.00%
Bootstrap support for A8HMB6 as seed ortholog is 86%.
Bootstrap support for Q5JJ82 as seed ortholog is 100%.

Group of orthologs #260. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:15

A8HT57              	100.00%		Q5JG52              	100.00%
Bootstrap support for A8HT57 as seed ortholog is 100%.
Bootstrap support for Q5JG52 as seed ortholog is 60%.
Alternative seed ortholog is Q5JHE4 (15 bits away from this cluster)

Group of orthologs #261. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:101

A8HMG7              	100.00%		Q5JJF9              	100.00%
Bootstrap support for A8HMG7 as seed ortholog is 100%.
Bootstrap support for Q5JJF9 as seed ortholog is 100%.

Group of orthologs #262. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:101

A8HZK6              	100.00%		Q5JF15              	100.00%
Bootstrap support for A8HZK6 as seed ortholog is 100%.
Bootstrap support for Q5JF15 as seed ortholog is 100%.

Group of orthologs #263. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:101

A8IYG3              	100.00%		Q5JEP5              	100.00%
Bootstrap support for A8IYG3 as seed ortholog is 100%.
Bootstrap support for Q5JEP5 as seed ortholog is 100%.

Group of orthologs #264. Best score 101 bits
Score difference with first non-orthologous sequence - C.reinhardtii:101 P.kodakaraensis:101

Q6V9B3              	100.00%		Q5JIQ1              	100.00%
Bootstrap support for Q6V9B3 as seed ortholog is 100%.
Bootstrap support for Q5JIQ1 as seed ortholog is 100%.

Group of orthologs #265. Best score 100 bits
Score difference with first non-orthologous sequence - C.reinhardtii:100 P.kodakaraensis:100

A8IPC9              	100.00%		Q5JD35              	100.00%
Bootstrap support for A8IPC9 as seed ortholog is 100%.
Bootstrap support for Q5JD35 as seed ortholog is 100%.

Group of orthologs #266. Best score 99 bits
Score difference with first non-orthologous sequence - C.reinhardtii:35 P.kodakaraensis:99

A8HNE8              	100.00%		Q5JE27              	100.00%
                    	       		Q5JEL4              	6.24%
Bootstrap support for A8HNE8 as seed ortholog is 78%.
Bootstrap support for Q5JE27 as seed ortholog is 100%.

Group of orthologs #267. Best score 99 bits
Score difference with first non-orthologous sequence - C.reinhardtii:99 P.kodakaraensis:99

A8HS48              	100.00%		Q5JGM4              	100.00%
Bootstrap support for A8HS48 as seed ortholog is 100%.
Bootstrap support for Q5JGM4 as seed ortholog is 100%.

Group of orthologs #268. Best score 99 bits
Score difference with first non-orthologous sequence - C.reinhardtii:15 P.kodakaraensis:99

A8I4T2              	100.00%		Q5JH35              	100.00%
Bootstrap support for A8I4T2 as seed ortholog is 72%.
Alternative seed ortholog is A8I8Z4 (15 bits away from this cluster)
Bootstrap support for Q5JH35 as seed ortholog is 100%.

Group of orthologs #269. Best score 99 bits
Score difference with first non-orthologous sequence - C.reinhardtii:99 P.kodakaraensis:99

A8I3J7              	100.00%		Q5JIS3              	100.00%
Bootstrap support for A8I3J7 as seed ortholog is 100%.
Bootstrap support for Q5JIS3 as seed ortholog is 100%.

Group of orthologs #270. Best score 98 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:98

A8IRT8              	100.00%		Q5JDA4              	100.00%
A8IRT7              	59.40%		
Bootstrap support for A8IRT8 as seed ortholog is 98%.
Bootstrap support for Q5JDA4 as seed ortholog is 100%.

Group of orthologs #271. Best score 97 bits
Score difference with first non-orthologous sequence - C.reinhardtii:19 P.kodakaraensis:97

A8JFB3              	100.00%		Q5JJ61              	100.00%
O64927              	18.43%		
A8HTQ6              	13.78%		
A8J6F5              	9.46%		
A8IRJ0              	8.08%		
A8J9R4              	6.20%		
Bootstrap support for A8JFB3 as seed ortholog is 60%.
Alternative seed ortholog is A8JJB6 (19 bits away from this cluster)
Bootstrap support for Q5JJ61 as seed ortholog is 100%.

Group of orthologs #272. Best score 97 bits
Score difference with first non-orthologous sequence - C.reinhardtii:97 P.kodakaraensis:97

A8HQR0              	100.00%		Q5JDA8              	100.00%
Bootstrap support for A8HQR0 as seed ortholog is 100%.
Bootstrap support for Q5JDA8 as seed ortholog is 100%.

Group of orthologs #273. Best score 97 bits
Score difference with first non-orthologous sequence - C.reinhardtii:97 P.kodakaraensis:97

A8JFE1              	100.00%		Q5JE74              	100.00%
Bootstrap support for A8JFE1 as seed ortholog is 100%.
Bootstrap support for Q5JE74 as seed ortholog is 100%.

Group of orthologs #274. Best score 96 bits
Score difference with first non-orthologous sequence - C.reinhardtii:96 P.kodakaraensis:96

A8HS59              	100.00%		Q5JDH4              	100.00%
Bootstrap support for A8HS59 as seed ortholog is 100%.
Bootstrap support for Q5JDH4 as seed ortholog is 100%.

Group of orthologs #275. Best score 96 bits
Score difference with first non-orthologous sequence - C.reinhardtii:96 P.kodakaraensis:96

A8HP55              	100.00%		Q5JJG7              	100.00%
Bootstrap support for A8HP55 as seed ortholog is 100%.
Bootstrap support for Q5JJG7 as seed ortholog is 100%.

Group of orthologs #276. Best score 96 bits
Score difference with first non-orthologous sequence - C.reinhardtii:42 P.kodakaraensis:96

A8IQD4              	100.00%		O74035              	100.00%
Bootstrap support for A8IQD4 as seed ortholog is 91%.
Bootstrap support for O74035 as seed ortholog is 100%.

Group of orthologs #277. Best score 94 bits
Score difference with first non-orthologous sequence - C.reinhardtii:94 P.kodakaraensis:94

A8J7C6              	100.00%		Q5JDW2              	100.00%
A8J7C5              	65.42%		
A8J7C7              	37.83%		
Bootstrap support for A8J7C6 as seed ortholog is 100%.
Bootstrap support for Q5JDW2 as seed ortholog is 100%.

Group of orthologs #278. Best score 94 bits
Score difference with first non-orthologous sequence - C.reinhardtii:94 P.kodakaraensis:94

A8JHX0              	100.00%		Q5JF32              	100.00%
                    	       		Q5JFD3              	45.34%
Bootstrap support for A8JHX0 as seed ortholog is 100%.
Bootstrap support for Q5JF32 as seed ortholog is 100%.

Group of orthologs #279. Best score 94 bits
Score difference with first non-orthologous sequence - C.reinhardtii:94 P.kodakaraensis:94

A8HWS3              	100.00%		Q5JEB7              	100.00%
Bootstrap support for A8HWS3 as seed ortholog is 100%.
Bootstrap support for Q5JEB7 as seed ortholog is 100%.

Group of orthologs #280. Best score 94 bits
Score difference with first non-orthologous sequence - C.reinhardtii:94 P.kodakaraensis:94

A8IVW9              	100.00%		Q5JIT0              	100.00%
Bootstrap support for A8IVW9 as seed ortholog is 100%.
Bootstrap support for Q5JIT0 as seed ortholog is 100%.

Group of orthologs #281. Best score 93 bits
Score difference with first non-orthologous sequence - C.reinhardtii:93 P.kodakaraensis:93

A8J173              	100.00%		Q5JH37              	100.00%
Bootstrap support for A8J173 as seed ortholog is 100%.
Bootstrap support for Q5JH37 as seed ortholog is 100%.

Group of orthologs #282. Best score 93 bits
Score difference with first non-orthologous sequence - C.reinhardtii:9 P.kodakaraensis:93

A8J597              	100.00%		Q5JH34              	100.00%
Bootstrap support for A8J597 as seed ortholog is 62%.
Alternative seed ortholog is A8ICE4 (9 bits away from this cluster)
Bootstrap support for Q5JH34 as seed ortholog is 100%.

Group of orthologs #283. Best score 91 bits
Score difference with first non-orthologous sequence - C.reinhardtii:35 P.kodakaraensis:91

A8I3J5              	100.00%		Q5JH93              	100.00%
A8I8K4              	39.06%		
A8J901              	7.41%		
Bootstrap support for A8I3J5 as seed ortholog is 86%.
Bootstrap support for Q5JH93 as seed ortholog is 100%.

Group of orthologs #284. Best score 91 bits
Score difference with first non-orthologous sequence - C.reinhardtii:91 P.kodakaraensis:91

A8HTR6              	100.00%		Q5JJC7              	100.00%
Bootstrap support for A8HTR6 as seed ortholog is 100%.
Bootstrap support for Q5JJC7 as seed ortholog is 100%.

Group of orthologs #285. Best score 91 bits
Score difference with first non-orthologous sequence - C.reinhardtii:91 P.kodakaraensis:91

A8ITX1              	100.00%		Q5JI47              	100.00%
Bootstrap support for A8ITX1 as seed ortholog is 100%.
Bootstrap support for Q5JI47 as seed ortholog is 100%.

Group of orthologs #286. Best score 91 bits
Score difference with first non-orthologous sequence - C.reinhardtii:91 P.kodakaraensis:91

A8J499              	100.00%		Q5JCX1              	100.00%
Bootstrap support for A8J499 as seed ortholog is 100%.
Bootstrap support for Q5JCX1 as seed ortholog is 100%.

Group of orthologs #287. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:13 P.kodakaraensis:0

A8ISJ9              	100.00%		Q5JJ96              	100.00%
                    	       		Q5JDU2              	28.84%
                    	       		Q5JJ95              	26.45%
                    	       		Q5JDU1              	18.43%
                    	       		Q5JEP9              	7.85%
Bootstrap support for A8ISJ9 as seed ortholog is 59%.
Alternative seed ortholog is A8IFM3 (13 bits away from this cluster)
Bootstrap support for Q5JJ96 as seed ortholog is 47%.
Alternative seed ortholog is Q5JG78 (0 bits away from this cluster)

Group of orthologs #288. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:38 P.kodakaraensis:90

A8J004              	100.00%		Q5JEC0              	100.00%
                    	       		Q5JHM7              	20.81%
Bootstrap support for A8J004 as seed ortholog is 93%.
Bootstrap support for Q5JEC0 as seed ortholog is 100%.

Group of orthologs #289. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:90 P.kodakaraensis:90

A8HQ78              	100.00%		Q5JJB4              	100.00%
Bootstrap support for A8HQ78 as seed ortholog is 100%.
Bootstrap support for Q5JJB4 as seed ortholog is 100%.

Group of orthologs #290. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:90 P.kodakaraensis:90

A8HWK6              	100.00%		Q5JIA1              	100.00%
Bootstrap support for A8HWK6 as seed ortholog is 100%.
Bootstrap support for Q5JIA1 as seed ortholog is 100%.

Group of orthologs #291. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:45 P.kodakaraensis:90

A8IVU0              	100.00%		Q5JJF6              	100.00%
Bootstrap support for A8IVU0 as seed ortholog is 97%.
Bootstrap support for Q5JJF6 as seed ortholog is 100%.

Group of orthologs #292. Best score 90 bits
Score difference with first non-orthologous sequence - C.reinhardtii:90 P.kodakaraensis:90

A8J0C5              	100.00%		Q5JI40              	100.00%
Bootstrap support for A8J0C5 as seed ortholog is 100%.
Bootstrap support for Q5JI40 as seed ortholog is 100%.

Group of orthologs #293. Best score 89 bits
Score difference with first non-orthologous sequence - C.reinhardtii:89 P.kodakaraensis:89

A8IW70              	100.00%		Q5JHE8              	100.00%
Bootstrap support for A8IW70 as seed ortholog is 100%.
Bootstrap support for Q5JHE8 as seed ortholog is 100%.

Group of orthologs #294. Best score 89 bits
Score difference with first non-orthologous sequence - C.reinhardtii:89 P.kodakaraensis:89

A8J4I7              	100.00%		Q5JET7              	100.00%
Bootstrap support for A8J4I7 as seed ortholog is 100%.
Bootstrap support for Q5JET7 as seed ortholog is 100%.

Group of orthologs #295. Best score 89 bits
Score difference with first non-orthologous sequence - C.reinhardtii:38 P.kodakaraensis:89

A8J8M9              	100.00%		Q5JFZ5              	100.00%
Bootstrap support for A8J8M9 as seed ortholog is 98%.
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.

Group of orthologs #296. Best score 89 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:89

A8JHC3              	100.00%		Q5JDH9              	100.00%
Bootstrap support for A8JHC3 as seed ortholog is 98%.
Bootstrap support for Q5JDH9 as seed ortholog is 100%.

Group of orthologs #297. Best score 86 bits
Score difference with first non-orthologous sequence - C.reinhardtii:17 P.kodakaraensis:86

A8J9D1              	100.00%		Q5JGC0              	100.00%
A8IUA8              	24.31%		
Bootstrap support for A8J9D1 as seed ortholog is 69%.
Alternative seed ortholog is A8J096 (17 bits away from this cluster)
Bootstrap support for Q5JGC0 as seed ortholog is 100%.

Group of orthologs #298. Best score 86 bits
Score difference with first non-orthologous sequence - C.reinhardtii:86 P.kodakaraensis:86

A8J9U4              	100.00%		Q5JEH9              	100.00%
Bootstrap support for A8J9U4 as seed ortholog is 100%.
Bootstrap support for Q5JEH9 as seed ortholog is 100%.

Group of orthologs #299. Best score 86 bits
Score difference with first non-orthologous sequence - C.reinhardtii:86 P.kodakaraensis:86

A8JDZ9              	100.00%		Q5JD58              	100.00%
Bootstrap support for A8JDZ9 as seed ortholog is 100%.
Bootstrap support for Q5JD58 as seed ortholog is 100%.

Group of orthologs #300. Best score 86 bits
Score difference with first non-orthologous sequence - C.reinhardtii:86 P.kodakaraensis:86

A8JC08              	100.00%		Q5JGQ6              	100.00%
Bootstrap support for A8JC08 as seed ortholog is 100%.
Bootstrap support for Q5JGQ6 as seed ortholog is 100%.

Group of orthologs #301. Best score 86 bits
Score difference with first non-orthologous sequence - C.reinhardtii:86 P.kodakaraensis:86

A8JI10              	100.00%		Q5JDB8              	100.00%
Bootstrap support for A8JI10 as seed ortholog is 100%.
Bootstrap support for Q5JDB8 as seed ortholog is 100%.

Group of orthologs #302. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:23 P.kodakaraensis:19

A8I333              	100.00%		Q5JIG1              	100.00%
A8J5E7              	37.29%		Q5JIN8              	17.42%
                    	       		Q5JCX0              	14.79%
                    	       		Q5JDQ2              	14.61%
                    	       		Q5JIB0              	14.42%
                    	       		Q5JDA7              	13.11%
                    	       		Q5JGV1              	9.93%
Bootstrap support for A8I333 as seed ortholog is 79%.
Bootstrap support for Q5JIG1 as seed ortholog is 74%.
Alternative seed ortholog is Q5JG78 (19 bits away from this cluster)

Group of orthologs #303. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:8 P.kodakaraensis:34

A8IM66              	100.00%		Q5JG56              	6.94%
A8ISF1              	100.00%		Q5JH77              	100.00%
                    	       		Q5JDD9              	6.48%
Bootstrap support for A8IM66 as seed ortholog is 66%.
Alternative seed ortholog is A8IFM3 (8 bits away from this cluster)
Bootstrap support for A8ISF1 as seed ortholog is 62%.
Alternative seed ortholog is A8IFM3 (8 bits away from this cluster)
Bootstrap support for Q5JH77 as seed ortholog is 87%.

Group of orthologs #304. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:85 P.kodakaraensis:85

A8HPZ2              	100.00%		Q5JHS6              	100.00%
A8IZ81              	10.73%		
Bootstrap support for A8HPZ2 as seed ortholog is 100%.
Bootstrap support for Q5JHS6 as seed ortholog is 100%.

Group of orthologs #305. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:85 P.kodakaraensis:85

A8I0V1              	100.00%		Q5JH52              	100.00%
A8J1S7              	10.19%		
Bootstrap support for A8I0V1 as seed ortholog is 100%.
Bootstrap support for Q5JH52 as seed ortholog is 100%.

Group of orthologs #306. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:22 P.kodakaraensis:85

A8IM52              	100.00%		Q5JDV0              	100.00%
Bootstrap support for A8IM52 as seed ortholog is 65%.
Alternative seed ortholog is A8IRP0 (22 bits away from this cluster)
Bootstrap support for Q5JDV0 as seed ortholog is 100%.

Group of orthologs #307. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:85 P.kodakaraensis:85

A8ICX5              	100.00%		Q5JJF4              	100.00%
Bootstrap support for A8ICX5 as seed ortholog is 100%.
Bootstrap support for Q5JJF4 as seed ortholog is 100%.

Group of orthologs #308. Best score 85 bits
Score difference with first non-orthologous sequence - C.reinhardtii:85 P.kodakaraensis:85

A8JFX7              	100.00%		Q5JE01              	100.00%
Bootstrap support for A8JFX7 as seed ortholog is 100%.
Bootstrap support for Q5JE01 as seed ortholog is 100%.

Group of orthologs #309. Best score 84 bits
Score difference with first non-orthologous sequence - C.reinhardtii:84 P.kodakaraensis:84

A8HPN6              	100.00%		Q5JIV0              	100.00%
Bootstrap support for A8HPN6 as seed ortholog is 100%.
Bootstrap support for Q5JIV0 as seed ortholog is 100%.

Group of orthologs #310. Best score 84 bits
Score difference with first non-orthologous sequence - C.reinhardtii:4 P.kodakaraensis:84

A8ICA8              	100.00%		Q5JDG9              	100.00%
Bootstrap support for A8ICA8 as seed ortholog is 39%.
Alternative seed ortholog is A8HN08 (4 bits away from this cluster)
Bootstrap support for Q5JDG9 as seed ortholog is 100%.

Group of orthologs #311. Best score 84 bits
Score difference with first non-orthologous sequence - C.reinhardtii:84 P.kodakaraensis:84

A8I7Y8              	100.00%		Q5JG26              	100.00%
Bootstrap support for A8I7Y8 as seed ortholog is 100%.
Bootstrap support for Q5JG26 as seed ortholog is 100%.

Group of orthologs #312. Best score 84 bits
Score difference with first non-orthologous sequence - C.reinhardtii:8 P.kodakaraensis:84

A8J3X9              	100.00%		Q5JHP6              	100.00%
Bootstrap support for A8J3X9 as seed ortholog is 63%.
Alternative seed ortholog is A8IUH9 (8 bits away from this cluster)
Bootstrap support for Q5JHP6 as seed ortholog is 100%.

Group of orthologs #313. Best score 83 bits
Score difference with first non-orthologous sequence - C.reinhardtii:83 P.kodakaraensis:83

A8J239              	100.00%		Q5JDH1              	100.00%
Bootstrap support for A8J239 as seed ortholog is 100%.
Bootstrap support for Q5JDH1 as seed ortholog is 100%.

Group of orthologs #314. Best score 83 bits
Score difference with first non-orthologous sequence - C.reinhardtii:4 P.kodakaraensis:83

A8JFI9              	100.00%		Q5JGM0              	100.00%
Bootstrap support for A8JFI9 as seed ortholog is 56%.
Alternative seed ortholog is A8J6Q1 (4 bits away from this cluster)
Bootstrap support for Q5JGM0 as seed ortholog is 100%.

Group of orthologs #315. Best score 82 bits
Score difference with first non-orthologous sequence - C.reinhardtii:82 P.kodakaraensis:82

A8HYJ4              	100.00%		Q5JDB7              	100.00%
Bootstrap support for A8HYJ4 as seed ortholog is 100%.
Bootstrap support for Q5JDB7 as seed ortholog is 100%.

Group of orthologs #316. Best score 82 bits
Score difference with first non-orthologous sequence - C.reinhardtii:82 P.kodakaraensis:82

A8IBS9              	100.00%		Q5JE94              	100.00%
Bootstrap support for A8IBS9 as seed ortholog is 100%.
Bootstrap support for Q5JE94 as seed ortholog is 100%.

Group of orthologs #317. Best score 81 bits
Score difference with first non-orthologous sequence - C.reinhardtii:81 P.kodakaraensis:81

A8JBC7              	100.00%		Q5JFW9              	100.00%
A8IWK9              	23.55%		
Bootstrap support for A8JBC7 as seed ortholog is 100%.
Bootstrap support for Q5JFW9 as seed ortholog is 100%.

Group of orthologs #318. Best score 80 bits
Score difference with first non-orthologous sequence - C.reinhardtii:80 P.kodakaraensis:80

A8I9K4              	100.00%		Q5JFZ7              	100.00%
Bootstrap support for A8I9K4 as seed ortholog is 100%.
Bootstrap support for Q5JFZ7 as seed ortholog is 100%.

Group of orthologs #319. Best score 79 bits
Score difference with first non-orthologous sequence - C.reinhardtii:79 P.kodakaraensis:79

A8JGX1              	100.00%		Q5JHC0              	100.00%
                    	       		Q5JHG7              	5.61%
Bootstrap support for A8JGX1 as seed ortholog is 100%.
Bootstrap support for Q5JHC0 as seed ortholog is 100%.

Group of orthologs #320. Best score 79 bits
Score difference with first non-orthologous sequence - C.reinhardtii:79 P.kodakaraensis:79

A8JDA7              	100.00%		Q5JIS6              	100.00%
Bootstrap support for A8JDA7 as seed ortholog is 100%.
Bootstrap support for Q5JIS6 as seed ortholog is 100%.

Group of orthologs #321. Best score 77 bits
Score difference with first non-orthologous sequence - C.reinhardtii:20 P.kodakaraensis:77

A8HSY0              	100.00%		Q5JIL6              	100.00%
                    	       		Q5JFD8              	21.88%
Bootstrap support for A8HSY0 as seed ortholog is 71%.
Alternative seed ortholog is A8JCW9 (20 bits away from this cluster)
Bootstrap support for Q5JIL6 as seed ortholog is 100%.

Group of orthologs #322. Best score 77 bits
Score difference with first non-orthologous sequence - C.reinhardtii:16 P.kodakaraensis:77

A8I4N7              	100.00%		Q5JF34              	100.00%
Bootstrap support for A8I4N7 as seed ortholog is 74%.
Alternative seed ortholog is A8HPP5 (16 bits away from this cluster)
Bootstrap support for Q5JF34 as seed ortholog is 100%.

Group of orthologs #323. Best score 77 bits
Score difference with first non-orthologous sequence - C.reinhardtii:77 P.kodakaraensis:77

A8J7U7              	100.00%		Q5JIQ0              	100.00%
Bootstrap support for A8J7U7 as seed ortholog is 100%.
Bootstrap support for Q5JIQ0 as seed ortholog is 100%.

Group of orthologs #324. Best score 76 bits
Score difference with first non-orthologous sequence - C.reinhardtii:3 P.kodakaraensis:76

A8IW91              	100.00%		Q5JI92              	100.00%
Bootstrap support for A8IW91 as seed ortholog is 51%.
Alternative seed ortholog is A8I8K9 (3 bits away from this cluster)
Bootstrap support for Q5JI92 as seed ortholog is 100%.

Group of orthologs #325. Best score 76 bits
Score difference with first non-orthologous sequence - C.reinhardtii:76 P.kodakaraensis:76

A8JI83              	100.00%		Q5JDJ8              	100.00%
Bootstrap support for A8JI83 as seed ortholog is 100%.
Bootstrap support for Q5JDJ8 as seed ortholog is 100%.

Group of orthologs #326. Best score 75 bits
Score difference with first non-orthologous sequence - C.reinhardtii:24 P.kodakaraensis:75

A8IWN9              	100.00%		Q5JEE1              	100.00%
A8IFX2              	10.43%		
Bootstrap support for A8IWN9 as seed ortholog is 82%.
Bootstrap support for Q5JEE1 as seed ortholog is 100%.

Group of orthologs #327. Best score 75 bits
Score difference with first non-orthologous sequence - C.reinhardtii:75 P.kodakaraensis:75

A8HSJ0              	100.00%		Q5JJC9              	100.00%
Bootstrap support for A8HSJ0 as seed ortholog is 100%.
Bootstrap support for Q5JJC9 as seed ortholog is 100%.

Group of orthologs #328. Best score 74 bits
Score difference with first non-orthologous sequence - C.reinhardtii:74 P.kodakaraensis:74

A8J928              	100.00%		Q5JI22              	100.00%
A8HWM4              	6.75%		Q5JG58              	8.45%
Bootstrap support for A8J928 as seed ortholog is 100%.
Bootstrap support for Q5JI22 as seed ortholog is 100%.

Group of orthologs #329. Best score 74 bits
Score difference with first non-orthologous sequence - C.reinhardtii:74 P.kodakaraensis:74

A8ISJ7              	100.00%		Q5JFG7              	100.00%
                    	       		Q5JFG2              	58.84%
Bootstrap support for A8ISJ7 as seed ortholog is 100%.
Bootstrap support for Q5JFG7 as seed ortholog is 100%.

Group of orthologs #330. Best score 74 bits
Score difference with first non-orthologous sequence - C.reinhardtii:22 P.kodakaraensis:74

A8J3J7              	100.00%		Q5JIT6              	100.00%
Bootstrap support for A8J3J7 as seed ortholog is 75%.
Bootstrap support for Q5JIT6 as seed ortholog is 100%.

Group of orthologs #331. Best score 74 bits
Score difference with first non-orthologous sequence - C.reinhardtii:74 P.kodakaraensis:74

A8J8T5              	100.00%		Q5JHS3              	100.00%
Bootstrap support for A8J8T5 as seed ortholog is 100%.
Bootstrap support for Q5JHS3 as seed ortholog is 100%.

Group of orthologs #332. Best score 74 bits
Score difference with first non-orthologous sequence - C.reinhardtii:74 P.kodakaraensis:74

A8JAC5              	100.00%		Q5JJ28              	100.00%
Bootstrap support for A8JAC5 as seed ortholog is 100%.
Bootstrap support for Q5JJ28 as seed ortholog is 100%.

Group of orthologs #333. Best score 73 bits
Score difference with first non-orthologous sequence - C.reinhardtii:73 P.kodakaraensis:73

A8I459              	100.00%		Q5JJ48              	100.00%
Bootstrap support for A8I459 as seed ortholog is 100%.
Bootstrap support for Q5JJ48 as seed ortholog is 100%.

Group of orthologs #334. Best score 72 bits
Score difference with first non-orthologous sequence - C.reinhardtii:72 P.kodakaraensis:72

A8IIZ1              	100.00%		Q5JIE2              	100.00%
A8IHW0              	24.72%		
A8IXA0              	22.57%		
A8HPG3              	20.43%		
A8HNF6              	17.40%		
A8IV68              	11.73%		
Bootstrap support for A8IIZ1 as seed ortholog is 100%.
Bootstrap support for Q5JIE2 as seed ortholog is 100%.

Group of orthologs #335. Best score 72 bits
Score difference with first non-orthologous sequence - C.reinhardtii:72 P.kodakaraensis:72

A8I2D8              	100.00%		Q5JJC3              	100.00%
Bootstrap support for A8I2D8 as seed ortholog is 100%.
Bootstrap support for Q5JJC3 as seed ortholog is 100%.

Group of orthologs #336. Best score 72 bits
Score difference with first non-orthologous sequence - C.reinhardtii:72 P.kodakaraensis:72

A8JF94              	100.00%		Q5JH94              	100.00%
Bootstrap support for A8JF94 as seed ortholog is 100%.
Bootstrap support for Q5JH94 as seed ortholog is 100%.

Group of orthologs #337. Best score 72 bits
Score difference with first non-orthologous sequence - C.reinhardtii:72 P.kodakaraensis:72

Q6V9B1              	100.00%		Q5JGG3              	100.00%
Bootstrap support for Q6V9B1 as seed ortholog is 100%.
Bootstrap support for Q5JGG3 as seed ortholog is 100%.

Group of orthologs #338. Best score 71 bits
Score difference with first non-orthologous sequence - C.reinhardtii:71 P.kodakaraensis:71

A8J9G8              	100.00%		Q5JJ32              	100.00%
Bootstrap support for A8J9G8 as seed ortholog is 100%.
Bootstrap support for Q5JJ32 as seed ortholog is 100%.

Group of orthologs #339. Best score 70 bits
Score difference with first non-orthologous sequence - C.reinhardtii:70 P.kodakaraensis:70

A8I297              	100.00%		Q5JI42              	100.00%
Bootstrap support for A8I297 as seed ortholog is 100%.
Bootstrap support for Q5JI42 as seed ortholog is 100%.

Group of orthologs #340. Best score 70 bits
Score difference with first non-orthologous sequence - C.reinhardtii:70 P.kodakaraensis:70

A8IS18              	100.00%		Q5JF42              	100.00%
Bootstrap support for A8IS18 as seed ortholog is 100%.
Bootstrap support for Q5JF42 as seed ortholog is 100%.

Group of orthologs #341. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8JDR4              	100.00%		Q5JER1              	100.00%
A8JCH3              	61.09%		
A8J8K1              	19.46%		
Bootstrap support for A8JDR4 as seed ortholog is 100%.
Bootstrap support for Q5JER1 as seed ortholog is 100%.

Group of orthologs #342. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8HNE6              	100.00%		Q5JJ22              	100.00%
A8J3S2              	9.07%		
Bootstrap support for A8HNE6 as seed ortholog is 100%.
Bootstrap support for Q5JJ22 as seed ortholog is 100%.

Group of orthologs #343. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8JD26              	100.00%		Q5JGQ4              	100.00%
                    	       		Q5JGQ5              	56.16%
Bootstrap support for A8JD26 as seed ortholog is 100%.
Bootstrap support for Q5JGQ4 as seed ortholog is 100%.

Group of orthologs #344. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:20 P.kodakaraensis:69

A8HM72              	100.00%		Q5JIX8              	100.00%
Bootstrap support for A8HM72 as seed ortholog is 61%.
Alternative seed ortholog is A8I4R2 (20 bits away from this cluster)
Bootstrap support for Q5JIX8 as seed ortholog is 100%.

Group of orthologs #345. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8HYG8              	100.00%		Q5JFV7              	100.00%
Bootstrap support for A8HYG8 as seed ortholog is 100%.
Bootstrap support for Q5JFV7 as seed ortholog is 100%.

Group of orthologs #346. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:10 P.kodakaraensis:20

A8ICK6              	100.00%		Q5JDZ1              	100.00%
Bootstrap support for A8ICK6 as seed ortholog is 66%.
Alternative seed ortholog is A8JG35 (10 bits away from this cluster)
Bootstrap support for Q5JDZ1 as seed ortholog is 77%.

Group of orthologs #347. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8IKP1              	100.00%		Q5JGR4              	100.00%
Bootstrap support for A8IKP1 as seed ortholog is 100%.
Bootstrap support for Q5JGR4 as seed ortholog is 100%.

Group of orthologs #348. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8J236              	100.00%		Q5JF23              	100.00%
Bootstrap support for A8J236 as seed ortholog is 100%.
Bootstrap support for Q5JF23 as seed ortholog is 100%.

Group of orthologs #349. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8J2G4              	100.00%		Q5JJG5              	100.00%
Bootstrap support for A8J2G4 as seed ortholog is 100%.
Bootstrap support for Q5JJG5 as seed ortholog is 100%.

Group of orthologs #350. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:20 P.kodakaraensis:69

A8JB67              	100.00%		Q5JGR3              	100.00%
Bootstrap support for A8JB67 as seed ortholog is 89%.
Bootstrap support for Q5JGR3 as seed ortholog is 100%.

Group of orthologs #351. Best score 69 bits
Score difference with first non-orthologous sequence - C.reinhardtii:69 P.kodakaraensis:69

A8JBY3              	100.00%		Q5JGN8              	100.00%
Bootstrap support for A8JBY3 as seed ortholog is 100%.
Bootstrap support for Q5JGN8 as seed ortholog is 100%.

Group of orthologs #352. Best score 68 bits
Score difference with first non-orthologous sequence - C.reinhardtii:68 P.kodakaraensis:68

A8HY08              	100.00%		Q5JDM6              	100.00%
Bootstrap support for A8HY08 as seed ortholog is 100%.
Bootstrap support for Q5JDM6 as seed ortholog is 100%.

Group of orthologs #353. Best score 68 bits
Score difference with first non-orthologous sequence - C.reinhardtii:68 P.kodakaraensis:68

A8JCZ5              	100.00%		Q5JI44              	100.00%
Bootstrap support for A8JCZ5 as seed ortholog is 100%.
Bootstrap support for Q5JI44 as seed ortholog is 100%.

Group of orthologs #354. Best score 66 bits
Score difference with first non-orthologous sequence - C.reinhardtii:66 P.kodakaraensis:66

A8ICT1              	100.00%		Q5JE35              	100.00%
Bootstrap support for A8ICT1 as seed ortholog is 100%.
Bootstrap support for Q5JE35 as seed ortholog is 100%.

Group of orthologs #355. Best score 66 bits
Score difference with first non-orthologous sequence - C.reinhardtii:18 P.kodakaraensis:66

A8JGN6              	100.00%		Q5JIR5              	100.00%
Bootstrap support for A8JGN6 as seed ortholog is 69%.
Alternative seed ortholog is A8I6W9 (18 bits away from this cluster)
Bootstrap support for Q5JIR5 as seed ortholog is 100%.

Group of orthologs #356. Best score 66 bits
Score difference with first non-orthologous sequence - C.reinhardtii:66 P.kodakaraensis:66

Q6VPQ2              	100.00%		Q5JG60              	100.00%
Bootstrap support for Q6VPQ2 as seed ortholog is 100%.
Bootstrap support for Q5JG60 as seed ortholog is 100%.

Group of orthologs #357. Best score 65 bits
Score difference with first non-orthologous sequence - C.reinhardtii:65 P.kodakaraensis:65

A8IK88              	100.00%		Q5JJ34              	100.00%
Bootstrap support for A8IK88 as seed ortholog is 100%.
Bootstrap support for Q5JJ34 as seed ortholog is 100%.

Group of orthologs #358. Best score 64 bits
Score difference with first non-orthologous sequence - C.reinhardtii:64 P.kodakaraensis:64

A8I3U7              	100.00%		Q5JIB2              	100.00%
A8I501              	61.75%		
Bootstrap support for A8I3U7 as seed ortholog is 100%.
Bootstrap support for Q5JIB2 as seed ortholog is 100%.

Group of orthologs #359. Best score 64 bits
Score difference with first non-orthologous sequence - C.reinhardtii:64 P.kodakaraensis:64

A8IQT7              	100.00%		Q5JI19              	100.00%
Bootstrap support for A8IQT7 as seed ortholog is 100%.
Bootstrap support for Q5JI19 as seed ortholog is 100%.

Group of orthologs #360. Best score 63 bits
Score difference with first non-orthologous sequence - C.reinhardtii:63 P.kodakaraensis:63

A8IRW9              	100.00%		Q5JH21              	100.00%
A8IRW7              	34.17%		
Bootstrap support for A8IRW9 as seed ortholog is 100%.
Bootstrap support for Q5JH21 as seed ortholog is 100%.

Group of orthologs #361. Best score 62 bits
Score difference with first non-orthologous sequence - C.reinhardtii:62 P.kodakaraensis:62

A8IEU2              	100.00%		Q5JG15              	100.00%
A8I8J2              	9.36%		
A8IBL2              	5.83%		
Bootstrap support for A8IEU2 as seed ortholog is 100%.
Bootstrap support for Q5JG15 as seed ortholog is 100%.

Group of orthologs #362. Best score 62 bits
Score difference with first non-orthologous sequence - C.reinhardtii:62 P.kodakaraensis:62

A8HPI1              	100.00%		Q5JFW2              	100.00%
Bootstrap support for A8HPI1 as seed ortholog is 100%.
Bootstrap support for Q5JFW2 as seed ortholog is 100%.

Group of orthologs #363. Best score 62 bits
Score difference with first non-orthologous sequence - C.reinhardtii:62 P.kodakaraensis:62

A8IVE2              	100.00%		Q5JJG9              	100.00%
Bootstrap support for A8IVE2 as seed ortholog is 100%.
Bootstrap support for Q5JJG9 as seed ortholog is 100%.

Group of orthologs #364. Best score 62 bits
Score difference with first non-orthologous sequence - C.reinhardtii:62 P.kodakaraensis:62

Q8LRU1              	100.00%		Q5JII2              	100.00%
Bootstrap support for Q8LRU1 as seed ortholog is 100%.
Bootstrap support for Q5JII2 as seed ortholog is 100%.

Group of orthologs #365. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:2 P.kodakaraensis:61

A8J740              	100.00%		Q5JEN3              	100.00%
A8J741              	39.42%		
A8J746              	37.50%		
A8JAS8              	18.27%		
A8HUK0              	17.79%		
A8J3L3              	14.90%		
Bootstrap support for A8J740 as seed ortholog is 57%.
Alternative seed ortholog is A8J3C1 (2 bits away from this cluster)
Bootstrap support for Q5JEN3 as seed ortholog is 100%.

Group of orthologs #366. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:61

A8IH85              	100.00%		Q5JH70              	100.00%
A8J119              	18.21%		
Bootstrap support for A8IH85 as seed ortholog is 100%.
Bootstrap support for Q5JH70 as seed ortholog is 100%.

Group of orthologs #367. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:61

A8IV41              	100.00%		Q5JFK6              	100.00%
                    	       		Q5JES6              	26.27%
Bootstrap support for A8IV41 as seed ortholog is 100%.
Bootstrap support for Q5JFK6 as seed ortholog is 100%.

Group of orthologs #368. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:61

A8J261              	100.00%		Q5JGT1              	100.00%
A8J4W7              	12.78%		
Bootstrap support for A8J261 as seed ortholog is 100%.
Bootstrap support for Q5JGT1 as seed ortholog is 100%.

Group of orthologs #369. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:61

A8I4H4              	100.00%		Q5JH78              	100.00%
Bootstrap support for A8I4H4 as seed ortholog is 100%.
Bootstrap support for Q5JH78 as seed ortholog is 100%.

Group of orthologs #370. Best score 61 bits
Score difference with first non-orthologous sequence - C.reinhardtii:61 P.kodakaraensis:61

A8JBE3              	100.00%		Q5JDI9              	100.00%
Bootstrap support for A8JBE3 as seed ortholog is 100%.
Bootstrap support for Q5JDI9 as seed ortholog is 100%.

Group of orthologs #371. Best score 60 bits
Score difference with first non-orthologous sequence - C.reinhardtii:60 P.kodakaraensis:10

A8J820              	100.00%		Q5JF41              	100.00%
                    	       		Q5JDX1              	7.24%
Bootstrap support for A8J820 as seed ortholog is 100%.
Bootstrap support for Q5JF41 as seed ortholog is 68%.
Alternative seed ortholog is Q5JIM6 (10 bits away from this cluster)

Group of orthologs #372. Best score 60 bits
Score difference with first non-orthologous sequence - C.reinhardtii:60 P.kodakaraensis:60

A8I2T0              	100.00%		Q5JJH0              	100.00%
Bootstrap support for A8I2T0 as seed ortholog is 100%.
Bootstrap support for Q5JJH0 as seed ortholog is 100%.

Group of orthologs #373. Best score 59 bits
Score difference with first non-orthologous sequence - C.reinhardtii:8 P.kodakaraensis:6

A8IR23              	100.00%		Q5JD61              	100.00%
A8J8D4              	6.74%		Q5JEG7              	9.33%
                    	       		Q5JG46              	8.29%
Bootstrap support for A8IR23 as seed ortholog is 63%.
Alternative seed ortholog is A8J5M0 (8 bits away from this cluster)
Bootstrap support for Q5JD61 as seed ortholog is 59%.
Alternative seed ortholog is Q5JED4 (6 bits away from this cluster)

Group of orthologs #374. Best score 59 bits
Score difference with first non-orthologous sequence - C.reinhardtii:59 P.kodakaraensis:59

A8J9E9              	100.00%		Q5JHG4              	100.00%
A8J3K3              	15.41%		
A8J7T2              	14.59%		
Bootstrap support for A8J9E9 as seed ortholog is 100%.
Bootstrap support for Q5JHG4 as seed ortholog is 100%.

Group of orthologs #375. Best score 59 bits
Score difference with first non-orthologous sequence - C.reinhardtii:59 P.kodakaraensis:59

A8HMZ3              	100.00%		Q5JFS1              	100.00%
A8J3Y2              	35.63%		
Bootstrap support for A8HMZ3 as seed ortholog is 100%.
Bootstrap support for Q5JFS1 as seed ortholog is 100%.

Group of orthologs #376. Best score 59 bits
Score difference with first non-orthologous sequence - C.reinhardtii:11 P.kodakaraensis:59

A8IVC2              	100.00%		Q5JIY4              	100.00%
Bootstrap support for A8IVC2 as seed ortholog is 70%.
Alternative seed ortholog is A8ISK2 (11 bits away from this cluster)
Bootstrap support for Q5JIY4 as seed ortholog is 100%.

Group of orthologs #377. Best score 59 bits
Score difference with first non-orthologous sequence - C.reinhardtii:59 P.kodakaraensis:59

A8J5R2              	100.00%		Q5JIE3              	100.00%
Bootstrap support for A8J5R2 as seed ortholog is 100%.
Bootstrap support for Q5JIE3 as seed ortholog is 100%.

Group of orthologs #378. Best score 58 bits
Score difference with first non-orthologous sequence - C.reinhardtii:58 P.kodakaraensis:58

A8I0Z1              	100.00%		P58502              	100.00%
                    	       		Q5JIZ5              	10.41%
Bootstrap support for A8I0Z1 as seed ortholog is 100%.
Bootstrap support for P58502 as seed ortholog is 100%.

Group of orthologs #379. Best score 58 bits
Score difference with first non-orthologous sequence - C.reinhardtii:58 P.kodakaraensis:58

A8HPT8              	100.00%		Q5JF38              	100.00%
Bootstrap support for A8HPT8 as seed ortholog is 100%.
Bootstrap support for Q5JF38 as seed ortholog is 100%.

Group of orthologs #380. Best score 57 bits
Score difference with first non-orthologous sequence - C.reinhardtii:57 P.kodakaraensis:57

A8IJ00              	100.00%		Q5JDC4              	100.00%
Bootstrap support for A8IJ00 as seed ortholog is 100%.
Bootstrap support for Q5JDC4 as seed ortholog is 100%.

Group of orthologs #381. Best score 57 bits
Score difference with first non-orthologous sequence - C.reinhardtii:57 P.kodakaraensis:57

A8IM74              	100.00%		Q5JE51              	100.00%
Bootstrap support for A8IM74 as seed ortholog is 100%.
Bootstrap support for Q5JE51 as seed ortholog is 100%.

Group of orthologs #382. Best score 57 bits
Score difference with first non-orthologous sequence - C.reinhardtii:57 P.kodakaraensis:57

A8J5C3              	100.00%		Q5JI46              	100.00%
Bootstrap support for A8J5C3 as seed ortholog is 100%.
Bootstrap support for Q5JI46 as seed ortholog is 100%.

Group of orthologs #383. Best score 57 bits
Score difference with first non-orthologous sequence - C.reinhardtii:57 P.kodakaraensis:57

A8JEM3              	100.00%		Q5JEE0              	100.00%
Bootstrap support for A8JEM3 as seed ortholog is 100%.
Bootstrap support for Q5JEE0 as seed ortholog is 100%.

Group of orthologs #384. Best score 57 bits
Score difference with first non-orthologous sequence - C.reinhardtii:57 P.kodakaraensis:57

A8JJB2              	100.00%		Q5JEX1              	100.00%
Bootstrap support for A8JJB2 as seed ortholog is 100%.
Bootstrap support for Q5JEX1 as seed ortholog is 100%.

Group of orthologs #385. Best score 56 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:56

A8IVV9              	100.00%		Q5JHZ0              	100.00%
A8JBG5              	16.76%		
Bootstrap support for A8IVV9 as seed ortholog is 100%.
Bootstrap support for Q5JHZ0 as seed ortholog is 100%.

Group of orthologs #386. Best score 56 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:56

A8J625              	100.00%		Q5JDM9              	100.00%
A8J5L3              	41.41%		
Bootstrap support for A8J625 as seed ortholog is 100%.
Bootstrap support for Q5JDM9 as seed ortholog is 100%.

Group of orthologs #387. Best score 56 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:56

A8I5Y2              	100.00%		Q5JE86              	100.00%
Bootstrap support for A8I5Y2 as seed ortholog is 100%.
Bootstrap support for Q5JE86 as seed ortholog is 100%.

Group of orthologs #388. Best score 56 bits
Score difference with first non-orthologous sequence - C.reinhardtii:56 P.kodakaraensis:56

A8I0I1              	100.00%		Q5JIY8              	100.00%
Bootstrap support for A8I0I1 as seed ortholog is 100%.
Bootstrap support for Q5JIY8 as seed ortholog is 100%.

Group of orthologs #389. Best score 55 bits
Score difference with first non-orthologous sequence - C.reinhardtii:4 P.kodakaraensis:55

A8J277              	100.00%		Q8X270              	100.00%
A8J868              	100.00%		
A8I6I3              	8.02%		
Bootstrap support for A8J277 as seed ortholog is 55%.
Alternative seed ortholog is A8JIF9 (4 bits away from this cluster)
Bootstrap support for A8J868 as seed ortholog is 54%.
Alternative seed ortholog is A8JIF9 (4 bits away from this cluster)
Bootstrap support for Q8X270 as seed ortholog is 100%.

Group of orthologs #390. Best score 55 bits
Score difference with first non-orthologous sequence - C.reinhardtii:7 P.kodakaraensis:55

A8HSF6              	100.00%		Q5JF96              	100.00%
Bootstrap support for A8HSF6 as seed ortholog is 60%.
Alternative seed ortholog is A8J3T1 (7 bits away from this cluster)
Bootstrap support for Q5JF96 as seed ortholog is 100%.

Group of orthologs #391. Best score 54 bits
Score difference with first non-orthologous sequence - C.reinhardtii:54 P.kodakaraensis:54

A8I0M3              	100.00%		Q5JCX9              	100.00%
Bootstrap support for A8I0M3 as seed ortholog is 100%.
Bootstrap support for Q5JCX9 as seed ortholog is 100%.

Group of orthologs #392. Best score 54 bits
Score difference with first non-orthologous sequence - C.reinhardtii:54 P.kodakaraensis:54

A8IF01              	100.00%		Q5JHT3              	100.00%
Bootstrap support for A8IF01 as seed ortholog is 100%.
Bootstrap support for Q5JHT3 as seed ortholog is 100%.

Group of orthologs #393. Best score 53 bits
Score difference with first non-orthologous sequence - C.reinhardtii:53 P.kodakaraensis:53

A8IWJ8              	100.00%		Q5JEY6              	100.00%
                    	       		Q5JEN7              	37.96%
                    	       		Q5JIA8              	37.15%
                    	       		Q5JFH7              	36.00%
                    	       		Q5JEW2              	32.29%
Bootstrap support for A8IWJ8 as seed ortholog is 100%.
Bootstrap support for Q5JEY6 as seed ortholog is 100%.

Group of orthologs #394. Best score 53 bits
Score difference with first non-orthologous sequence - C.reinhardtii:53 P.kodakaraensis:53

A8IBG1              	100.00%		Q5JIE1              	100.00%
Bootstrap support for A8IBG1 as seed ortholog is 100%.
Bootstrap support for Q5JIE1 as seed ortholog is 100%.

Group of orthologs #395. Best score 53 bits
Score difference with first non-orthologous sequence - C.reinhardtii:53 P.kodakaraensis:53

A8JGY0              	100.00%		Q5JGN3              	100.00%
Bootstrap support for A8JGY0 as seed ortholog is 100%.
Bootstrap support for Q5JGN3 as seed ortholog is 100%.

Group of orthologs #396. Best score 52 bits
Score difference with first non-orthologous sequence - C.reinhardtii:52 P.kodakaraensis:52

A8JBQ5              	100.00%		Q5JFN5              	100.00%
                    	       		Q5JD27              	14.56%
Bootstrap support for A8JBQ5 as seed ortholog is 100%.
Bootstrap support for Q5JFN5 as seed ortholog is 100%.

Group of orthologs #397. Best score 52 bits
Score difference with first non-orthologous sequence - C.reinhardtii:52 P.kodakaraensis:52

A8JD59              	100.00%		Q5JJD0              	100.00%
Bootstrap support for A8JD59 as seed ortholog is 100%.
Bootstrap support for Q5JJD0 as seed ortholog is 100%.

Group of orthologs #398. Best score 52 bits
Score difference with first non-orthologous sequence - C.reinhardtii:52 P.kodakaraensis:52

A8JIE5              	100.00%		Q5JJG2              	100.00%
Bootstrap support for A8JIE5 as seed ortholog is 100%.
Bootstrap support for Q5JJG2 as seed ortholog is 100%.

Group of orthologs #399. Best score 51 bits
Score difference with first non-orthologous sequence - C.reinhardtii:51 P.kodakaraensis:51

A8IYG7              	100.00%		Q5JH80              	100.00%
Bootstrap support for A8IYG7 as seed ortholog is 100%.
Bootstrap support for Q5JH80 as seed ortholog is 100%.

Group of orthologs #400. Best score 51 bits
Score difference with first non-orthologous sequence - C.reinhardtii:51 P.kodakaraensis:51

A8JJ58              	100.00%		Q5JGR5              	100.00%
Bootstrap support for A8JJ58 as seed ortholog is 100%.
Bootstrap support for Q5JGR5 as seed ortholog is 100%.

Group of orthologs #401. Best score 50 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:50

A8J0V6              	100.00%		Q5JE50              	100.00%
A8J576              	63.16%		
Bootstrap support for A8J0V6 as seed ortholog is 100%.
Bootstrap support for Q5JE50 as seed ortholog is 100%.

Group of orthologs #402. Best score 50 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:50

A8J650              	100.00%		Q9YGB1              	100.00%
Bootstrap support for A8J650 as seed ortholog is 100%.
Bootstrap support for Q9YGB1 as seed ortholog is 100%.

Group of orthologs #403. Best score 50 bits
Score difference with first non-orthologous sequence - C.reinhardtii:3 P.kodakaraensis:50

A8J8R7              	100.00%		Q5JIE0              	100.00%
Bootstrap support for A8J8R7 as seed ortholog is 45%.
Alternative seed ortholog is A8J2L7 (3 bits away from this cluster)
Bootstrap support for Q5JIE0 as seed ortholog is 100%.

Group of orthologs #404. Best score 50 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:50

A8J951              	100.00%		Q5JI51              	100.00%
Bootstrap support for A8J951 as seed ortholog is 100%.
Bootstrap support for Q5JI51 as seed ortholog is 100%.

Group of orthologs #405. Best score 50 bits
Score difference with first non-orthologous sequence - C.reinhardtii:50 P.kodakaraensis:50

Q00469              	100.00%		Q5JHT6              	100.00%
Bootstrap support for Q00469 as seed ortholog is 100%.
Bootstrap support for Q5JHT6 as seed ortholog is 100%.

Group of orthologs #406. Best score 49 bits
Score difference with first non-orthologous sequence - C.reinhardtii:49 P.kodakaraensis:49

A8JI31              	100.00%		Q5JIM7              	100.00%
Bootstrap support for A8JI31 as seed ortholog is 100%.
Bootstrap support for Q5JIM7 as seed ortholog is 100%.

Group of orthologs #407. Best score 48 bits
Score difference with first non-orthologous sequence - C.reinhardtii:48 P.kodakaraensis:48

A8IKZ2              	100.00%		Q5JJF5              	100.00%
Bootstrap support for A8IKZ2 as seed ortholog is 100%.
Bootstrap support for Q5JJF5 as seed ortholog is 100%.

Group of orthologs #408. Best score 48 bits
Score difference with first non-orthologous sequence - C.reinhardtii:48 P.kodakaraensis:48

A8J054              	100.00%		Q5JHQ2              	100.00%
Bootstrap support for A8J054 as seed ortholog is 100%.
Bootstrap support for Q5JHQ2 as seed ortholog is 100%.

Group of orthologs #409. Best score 47 bits
Score difference with first non-orthologous sequence - C.reinhardtii:47 P.kodakaraensis:47

A8HNP9              	100.00%		Q5JES5              	100.00%
Bootstrap support for A8HNP9 as seed ortholog is 100%.
Bootstrap support for Q5JES5 as seed ortholog is 100%.

Group of orthologs #410. Best score 47 bits
Score difference with first non-orthologous sequence - C.reinhardtii:47 P.kodakaraensis:47

A8HZ87              	100.00%		Q5JIR4              	100.00%
Bootstrap support for A8HZ87 as seed ortholog is 100%.
Bootstrap support for Q5JIR4 as seed ortholog is 100%.

Group of orthologs #411. Best score 47 bits
Score difference with first non-orthologous sequence - C.reinhardtii:47 P.kodakaraensis:47

A8IYX0              	100.00%		Q5JDG7              	100.00%
Bootstrap support for A8IYX0 as seed ortholog is 100%.
Bootstrap support for Q5JDG7 as seed ortholog is 100%.

Group of orthologs #412. Best score 47 bits
Score difference with first non-orthologous sequence - C.reinhardtii:47 P.kodakaraensis:47

A8IQE3              	100.00%		Q5JJE4              	100.00%
Bootstrap support for A8IQE3 as seed ortholog is 100%.
Bootstrap support for Q5JJE4 as seed ortholog is 100%.

Group of orthologs #413. Best score 46 bits
Score difference with first non-orthologous sequence - C.reinhardtii:46 P.kodakaraensis:46

A8HRP7              	100.00%		Q5JE88              	100.00%
Bootstrap support for A8HRP7 as seed ortholog is 100%.
Bootstrap support for Q5JE88 as seed ortholog is 100%.

Group of orthologs #414. Best score 45 bits
Score difference with first non-orthologous sequence - C.reinhardtii:3 P.kodakaraensis:45

A8J7D5              	100.00%		Q5JH23              	100.00%
A8JBT8              	100.00%		
Bootstrap support for A8J7D5 as seed ortholog is 53%.
Alternative seed ortholog is A8ICH8 (3 bits away from this cluster)
Bootstrap support for A8JBT8 as seed ortholog is 50%.
Alternative seed ortholog is A8ICH8 (3 bits away from this cluster)
Bootstrap support for Q5JH23 as seed ortholog is 100%.

Group of orthologs #415. Best score 45 bits
Score difference with first non-orthologous sequence - C.reinhardtii:45 P.kodakaraensis:45

A8JEX6              	100.00%		Q5JEA3              	100.00%
Bootstrap support for A8JEX6 as seed ortholog is 100%.
Bootstrap support for Q5JEA3 as seed ortholog is 100%.

Group of orthologs #416. Best score 45 bits
Score difference with first non-orthologous sequence - C.reinhardtii:45 P.kodakaraensis:45

A8JEE2              	100.00%		Q5JIU7              	100.00%
Bootstrap support for A8JEE2 as seed ortholog is 100%.
Bootstrap support for Q5JIU7 as seed ortholog is 100%.

Group of orthologs #417. Best score 44 bits
Score difference with first non-orthologous sequence - C.reinhardtii:44 P.kodakaraensis:44

A8IMZ5              	100.00%		Q5JEK3              	100.00%
A8IKQ6              	50.98%		
Bootstrap support for A8IMZ5 as seed ortholog is 100%.
Bootstrap support for Q5JEK3 as seed ortholog is 100%.

Group of orthologs #418. Best score 43 bits
Score difference with first non-orthologous sequence - C.reinhardtii:43 P.kodakaraensis:43

A8J308              	100.00%		Q8NKS4              	100.00%
                    	       		Q5JJ90              	13.66%
Bootstrap support for A8J308 as seed ortholog is 100%.
Bootstrap support for Q8NKS4 as seed ortholog is 100%.

Group of orthologs #419. Best score 43 bits
Score difference with first non-orthologous sequence - C.reinhardtii:43 P.kodakaraensis:43

A8JEN9              	100.00%		Q5JJ42              	100.00%
                    	       		Q5JEY7              	9.26%
Bootstrap support for A8JEN9 as seed ortholog is 100%.
Bootstrap support for Q5JJ42 as seed ortholog is 100%.

Group of orthologs #420. Best score 42 bits
Score difference with first non-orthologous sequence - C.reinhardtii:42 P.kodakaraensis:42

A8HWD0              	100.00%		Q5JIN0              	100.00%
Bootstrap support for A8HWD0 as seed ortholog is 100%.
Bootstrap support for Q5JIN0 as seed ortholog is 100%.

Group of orthologs #421. Best score 41 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:41

Q84XR9              	100.00%		Q5JDF3              	100.00%
A8HP58              	20.87%		
Q84XS2              	14.57%		
A8IZR5              	9.45%		
Bootstrap support for Q84XR9 as seed ortholog is 100%.
Bootstrap support for Q5JDF3 as seed ortholog is 100%.

Group of orthologs #422. Best score 41 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:41

A8IPI3              	100.00%		Q5JHX2              	100.00%
Bootstrap support for A8IPI3 as seed ortholog is 100%.
Bootstrap support for Q5JHX2 as seed ortholog is 100%.

Group of orthologs #423. Best score 41 bits
Score difference with first non-orthologous sequence - C.reinhardtii:41 P.kodakaraensis:41

A8J3T9              	100.00%		Q5JDL4              	100.00%
Bootstrap support for A8J3T9 as seed ortholog is 100%.
Bootstrap support for Q5JDL4 as seed ortholog is 100%.

Group of orthologs #424. Best score 40 bits
Score difference with first non-orthologous sequence - C.reinhardtii:40 P.kodakaraensis:40

A8ISK5              	100.00%		Q5JH10              	100.00%
Bootstrap support for A8ISK5 as seed ortholog is 100%.
Bootstrap support for Q5JH10 as seed ortholog is 100%.

Group of orthologs #425. Best score 40 bits
Score difference with first non-orthologous sequence - C.reinhardtii:40 P.kodakaraensis:40

A8J2V3              	100.00%		Q5JFK7              	100.00%
Bootstrap support for A8J2V3 as seed ortholog is 100%.
Bootstrap support for Q5JFK7 as seed ortholog is 100%.