<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1026" inparalogs="3671"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="S.tuberosum" link="http://www.uniprot.org/taxonomy/4113"/>
    </notes>
  </species>
  <species name="Theileria parva " NCBITaxId="5875">
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    </database>
    <notes>
      <additionalInformation abbreviation="T.parva" link="http://www.uniprot.org/taxonomy/5875"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1559"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="3">
      <score id="bit" value="1374"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="4">
      <score id="bit" value="1298"/>
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      <geneRef id="8">
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1293"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.682"/>
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        <score id="inparalog" value="0.68"/>
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        <score id="inparalog" value="0.68"/>
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        <score id="inparalog" value="0.673"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1004"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="22">
        <score id="inparalog" value="0.872"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="991"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.778"/>
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      <geneRef id="26">
        <score id="inparalog" value="0.545"/>
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        <score id="inparalog" value="1"/>
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        <score id="bootstrap" value="0.55"/>
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      <geneRef id="29">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.56"/>
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      <geneRef id="30">
        <score id="inparalog" value="0.896"/>
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      <geneRef id="31">
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.784"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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