<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="771" inparalogs="3023"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="S.tuberosum" link="http://www.uniprot.org/taxonomy/4113"/>
    </notes>
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    </database>
    <notes>
      <additionalInformation abbreviation="Synechocystis.sp." link="http://www.uniprot.org/taxonomy/1111708"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1440"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="4">
      <score id="bit" value="1307"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="5">
      <score id="bit" value="1285"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1255"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="12">
        <score id="inparalog" value="0.809"/>
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      <geneRef id="13">
        <score id="inparalog" value="0.79"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1145"/>
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        <score id="inparalog" value="1"/>
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