<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2350" inparalogs="6641"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Pyrenophora tritici-repentis " NCBITaxId="426418">
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    </database>
    <notes>
      <additionalInformation abbreviation="P.tritici-repentis" link="http://www.uniprot.org/taxonomy/426418"/>
    </notes>
  </species>
  <species name="Sarcophilus harrisii " NCBITaxId="9305">
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        <gene id="1965" protId="G3VWQ2" geneId="uncharacterized_G3VWQ2"/>
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        <gene id="1994" protId="G3WDX4" geneId="uncharacterized_G3WDX4"/>
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        <gene id="6213" protId="G3WTD9" geneId="uncharacterized_G3WTD9"/>
        <gene id="6214" protId="G3VWP4" geneId="TTC39C"/>
        <gene id="6219" protId="G3WT04" geneId="PIPOX"/>
        <gene id="6221" protId="G3VRW1" geneId="TMEM184C"/>
        <gene id="6222" protId="G3WDR7" geneId="TMEM184A"/>
        <gene id="6223" protId="G3VTQ8" geneId="TMEM184B"/>
        <gene id="6225" protId="G3WI16" geneId="PI15"/>
        <gene id="6226" protId="G3VWJ3" geneId="R3HDML"/>
        <gene id="6227" protId="G3VG09" geneId="uncharacterized_G3VG09"/>
        <gene id="6229" protId="G3X1P7" geneId="RPRD1B"/>
        <gene id="6230" protId="G3WV40" geneId="RPRD1A"/>
        <gene id="6231" protId="G3X0P3" geneId="uncharacterized_G3X0P3"/>
        <gene id="6233" protId="G3VEG3" geneId="ATP6V1G1"/>
        <gene id="6234" protId="G3WQM9" geneId="ATP6V1G3"/>
        <gene id="6237" protId="G3WXQ4" geneId="LACTB"/>
        <gene id="6239" protId="G3W1E0" geneId="DGCR14"/>
        <gene id="6241" protId="G3WHB6" geneId="CCDC47"/>
        <gene id="6243" protId="G3X0J6" geneId="TBCA"/>
        <gene id="6245" protId="G3WRT2" geneId="UTP23"/>
        <gene id="6247" protId="G3X174" geneId="TIMM9"/>
        <gene id="6290" protId="G3W4D0" geneId="SLC17A9"/>
        <gene id="6291" protId="G3WJT1" geneId="SLC17A6"/>
        <gene id="6292" protId="G3WDI0" geneId="SLC17A8"/>
        <gene id="6293" protId="G3VSB4" geneId="uncharacterized_G3VSB4"/>
        <gene id="6294" protId="G3VUV2" geneId="uncharacterized_G3VUV2"/>
        <gene id="6295" protId="G3VY44" geneId="uncharacterized_G3VY44"/>
        <gene id="6297" protId="G3WT68" geneId="SCRN3"/>
        <gene id="6298" protId="G3VMJ1" geneId="SCRN2"/>
        <gene id="6299" protId="G3VPK1" geneId="SCRN1"/>
        <gene id="6301" protId="G3VMI9" geneId="SNAP23"/>
        <gene id="6302" protId="G3VSV6" geneId="SNAP25"/>
        <gene id="6304" protId="G3WA06" geneId="ABHD4"/>
        <gene id="6305" protId="G3X1K3" geneId="ABHD5"/>
        <gene id="6307" protId="G3VLA3" geneId="uncharacterized_G3VLA3"/>
        <gene id="6309" protId="G3VVY4" geneId="POLR2K"/>
        <gene id="6311" protId="G3VUM9" geneId="SLC39A2"/>
        <gene id="6313" protId="G3VFV0" geneId="ATP5D"/>
        <gene id="6315" protId="G3W9T1" geneId="GLRX"/>
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        <gene id="6340" protId="G3VYW7" geneId="SAP18"/>
        <gene id="6343" protId="G3WZI8" geneId="MAP3K7"/>
        <gene id="6344" protId="G3W1H8" geneId="uncharacterized_G3W1H8"/>
        <gene id="6346" protId="G3VEI3" geneId="CCDC90B"/>
        <gene id="6347" protId="G3WUG4" geneId="CCDC90A"/>
        <gene id="6349" protId="G3VV16" geneId="NUTF2"/>
        <gene id="6350" protId="G3VMF0" geneId="uncharacterized_G3VMF0"/>
        <gene id="6352" protId="G3WMU0" geneId="COX6A2"/>
        <gene id="6353" protId="G3W653" geneId="uncharacterized_G3W653"/>
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        <gene id="6357" protId="G3VRK5" geneId="PTAR1"/>
        <gene id="6359" protId="G3VUB6" geneId="uncharacterized_G3VUB6"/>
        <gene id="6361" protId="G3VYX7" geneId="uncharacterized_G3VYX7"/>
        <gene id="6363" protId="G3WL87" geneId="MRPL43"/>
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        <gene id="6369" protId="G3WRM3" geneId="KIAA1715"/>
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        <gene id="6379" protId="G3VBG5" geneId="RHAG"/>
        <gene id="6380" protId="G3W072" geneId="uncharacterized_G3W072"/>
        <gene id="6383" protId="G3VE93" geneId="uncharacterized_G3VE93"/>
        <gene id="6385" protId="G3VQG9" geneId="MAOB"/>
        <gene id="6386" protId="G3VU43" geneId="MAOA"/>
        <gene id="6388" protId="G3VHW7" geneId="CLTB"/>
        <gene id="6390" protId="G3VNI9" geneId="ATG12"/>
        <gene id="6392" protId="G3VEL7" geneId="uncharacterized_G3VEL7"/>
        <gene id="6394" protId="G3VS21" geneId="M6PR"/>
        <gene id="6396" protId="G3W6H1" geneId="uncharacterized_G3W6H1"/>
        <gene id="6398" protId="G3VYM0" geneId="DPM3"/>
        <gene id="6400" protId="G3WSS1" geneId="KLF6"/>
        <gene id="6402" protId="G3WJ96" geneId="MRPS14"/>
        <gene id="6404" protId="G3WQH4" geneId="SPCS3"/>
        <gene id="6409" protId="G3VBY1" geneId="GIMAP7"/>
        <gene id="6410" protId="G3VCN9" geneId="uncharacterized_G3VCN9"/>
        <gene id="6411" protId="G3VCH5" geneId="uncharacterized_G3VCH5"/>
        <gene id="6412" protId="G3W4D5" geneId="uncharacterized_G3W4D5"/>
        <gene id="6413" protId="G3WA64" geneId="uncharacterized_G3WA64"/>
        <gene id="6414" protId="G3VBT6" geneId="uncharacterized_G3VBT6"/>
        <gene id="6415" protId="G3VCP0" geneId="GIMAP5"/>
        <gene id="6416" protId="G3W5V9" geneId="uncharacterized_G3W5V9"/>
        <gene id="6417" protId="G3WAA1" geneId="uncharacterized_G3WAA1"/>
        <gene id="6418" protId="G3VEZ0" geneId="uncharacterized_G3VEZ0"/>
        <gene id="6421" protId="G3VEY8" geneId="ZNRD1"/>
        <gene id="6423" protId="G3VW48" geneId="SNX33"/>
        <gene id="6424" protId="G3X3L0" geneId="SNX9"/>
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        <gene id="6433" protId="G3WJ65" geneId="ATP5F1"/>
        <gene id="6435" protId="G3W7D7" geneId="CBX5"/>
        <gene id="6436" protId="G3W212" geneId="CBX1"/>
        <gene id="6437" protId="G3X0C1" geneId="CBX3"/>
        <gene id="6438" protId="G3VE94" geneId="uncharacterized_G3VE94"/>
        <gene id="6440" protId="G3VN28" geneId="BPNT1"/>
        <gene id="6441" protId="G3X1G2" geneId="uncharacterized_G3X1G2"/>
        <gene id="6442" protId="G3W2Q4" geneId="IMPAD1"/>
        <gene id="6444" protId="G3VXA1" geneId="GOSR1"/>
        <gene id="6446" protId="G3VD71" geneId="CMC2"/>
        <gene id="6448" protId="G3WQ52" geneId="LSM12"/>
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        <gene id="6456" protId="G3WCR6" geneId="FOXG1"/>
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        <gene id="6458" protId="G3VXW1" geneId="FOXI2"/>
        <gene id="6460" protId="G3WQS0" geneId="ZIC4"/>
        <gene id="6461" protId="G3VMH1" geneId="ZIC2"/>
        <gene id="6462" protId="G3VD02" geneId="uncharacterized_G3VD02"/>
        <gene id="6463" protId="G3WJ91" geneId="uncharacterized_G3WJ91"/>
        <gene id="6464" protId="G3WJQ1" geneId="PRDM13"/>
        <gene id="6466" protId="G3VP40" geneId="ZBTB45"/>
        <gene id="6467" protId="G3VKY0" geneId="ZNF575"/>
        <gene id="6468" protId="G3WPK5" geneId="uncharacterized_G3WPK5"/>
        <gene id="6470" protId="G3WJZ2" geneId="PGPEP1L"/>
        <gene id="6471" protId="G3VKN3" geneId="PGPEP1"/>
        <gene id="6473" protId="G3W7M5" geneId="MPPE1"/>
        <gene id="6475" protId="G3VT41" geneId="PITX2"/>
        <gene id="6476" protId="G3VX50" geneId="PHOX2A"/>
        <gene id="6477" protId="G3WK78" geneId="PITX1"/>
        <gene id="6478" protId="G3WR91" geneId="PHOX2B"/>
        <gene id="6479" protId="G3X3R4" geneId="PITX3"/>
        <gene id="6480" protId="G3WD18" geneId="OTX1"/>
        <gene id="6481" protId="G3VIW0" geneId="uncharacterized_G3VIW0"/>
        <gene id="6482" protId="G3X3I9" geneId="DRGX"/>
        <gene id="6483" protId="G3VXZ8" geneId="ALX3"/>
        <gene id="6484" protId="G3WCT5" geneId="PRRX2"/>
        <gene id="6485" protId="G3X0Z0" geneId="OTP"/>
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        <gene id="6487" protId="G3WH46" geneId="RAX"/>
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        <gene id="6489" protId="G3WHC1" geneId="SEBOX"/>
        <gene id="6491" protId="G3VJ89" geneId="uncharacterized_G3VJ89"/>
        <gene id="6492" protId="G3WZT8" geneId="uncharacterized_G3WZT8"/>
        <gene id="6494" protId="G3WWB9" geneId="UCK2"/>
        <gene id="6495" protId="G3WZM0" geneId="UCK1"/>
        <gene id="6497" protId="G3VDE1" geneId="WRB"/>
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        <gene id="6513" protId="G3VAU0" geneId="uncharacterized_G3VAU0"/>
        <gene id="6515" protId="G3W8H0" geneId="uncharacterized_G3W8H0"/>
        <gene id="6516" protId="G3VQH3" geneId="ZNF18"/>
        <gene id="6518" protId="G3VN79" geneId="TMEM50B"/>
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        <gene id="6543" protId="G3WLZ2" geneId="uncharacterized_G3WLZ2"/>
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        <gene id="6587" protId="G3WZG2" geneId="uncharacterized_G3WZG2"/>
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        <gene id="6602" protId="G3VKU1" geneId="BOLA1"/>
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        <gene id="6606" protId="G3WP36" geneId="HYPK"/>
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        <gene id="6611" protId="G3W8X2" geneId="CHCHD7"/>
        <gene id="6613" protId="G3X3W3" geneId="COX16"/>
        <gene id="6617" protId="G3VYP1" geneId="uncharacterized_G3VYP1"/>
        <gene id="6620" protId="G3WQ40" geneId="TMEM14A"/>
        <gene id="6621" protId="G3WD95" geneId="uncharacterized_G3WD95"/>
        <gene id="6623" protId="G3WQW2" geneId="uncharacterized_G3WQW2"/>
        <gene id="6624" protId="G3W492" geneId="uncharacterized_G3W492"/>
        <gene id="6627" protId="G3WN21" geneId="BPHL"/>
        <gene id="6629" protId="G3VIV6" geneId="DYNLRB2"/>
        <gene id="6631" protId="G3WK19" geneId="NDUFA12"/>
        <gene id="6633" protId="G3WH04" geneId="TTC36"/>
        <gene id="6635" protId="G3VDU5" geneId="uncharacterized_G3VDU5"/>
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        <gene id="6637" protId="G3VFZ0" geneId="NUDT3"/>
        <gene id="6640" protId="G3VYR1" geneId="GFOD1"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.harrisii" link="http://www.uniprot.org/taxonomy/9305"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3559"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2007"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="1945"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="1938"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1872"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1802"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="1671"/>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="17">
        <score id="inparalog" value="0.534"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="1650"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="1336"/>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1310"/>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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        <score id="inparalog" value="0.467"/>
      </geneRef>
    </orthologGroup>
  </groups>
</orthoXML>
