<?xml version="1.0" encoding="utf-8"?>
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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="P.alecto" link="http://www.uniprot.org/taxonomy/9402"/>
    </notes>
  </species>
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    <notes>
      <additionalInformation abbreviation="P.jiroveci" link="http://www.uniprot.org/taxonomy/1209962"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="3">
      <score id="bit" value="2148"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="4">
      <score id="bit" value="1981"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="8">
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="5">
      <score id="bit" value="1942"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1832"/>
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="7">
      <score id="bit" value="1814"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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