<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="295" inparalogs="821"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Oryzias latipes " NCBITaxId="8090">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="H2LXR4" geneId="CAD"/>
        <gene id="4" protId="H2MMU8" geneId="CPS1"/>
        <gene id="6" protId="H2LG47" geneId="Ola.22985"/>
        <gene id="7" protId="H2N0Y2" geneId="ACSS2"/>
        <gene id="9" protId="H2MCT7" geneId="VARS"/>
        <gene id="10" protId="H2M4G5" geneId="VARS2"/>
        <gene id="12" protId="H2LEL0" geneId="ATP5B"/>
        <gene id="14" protId="H2LFC7" geneId="ATP5A1 (1 of 2)"/>
        <gene id="16" protId="H2M0N8" geneId="GUF1"/>
        <gene id="18" protId="H2LRF2" geneId="uncharacterized_H2LRF2"/>
        <gene id="19" protId="A5HL62" geneId="HSP70-5"/>
        <gene id="20" protId="A5HL63" geneId="HSP70-3"/>
        <gene id="21" protId="H2LKZ3" geneId="Ola.9651"/>
        <gene id="22" protId="H2L3G7" geneId="Ola.9307"/>
        <gene id="23" protId="Q9W6Y1" geneId="hsc70"/>
        <gene id="24" protId="H2MEE9" geneId="Ola.26272"/>
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        <gene id="28" protId="H2LXN6" geneId="TKTL2"/>
        <gene id="29" protId="H2LAX5" geneId="TKT (2 of 2)"/>
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        <gene id="33" protId="H2LIC8" geneId="LARS2"/>
        <gene id="35" protId="H2L9U4" geneId="Ola.26934"/>
        <gene id="36" protId="H2L9L1" geneId="ATP1A1 (1 of 3)"/>
        <gene id="37" protId="H2MD99" geneId="Ola.7646"/>
        <gene id="38" protId="H2LRY7" geneId="uncharacterized_H2LRY7"/>
        <gene id="39" protId="H2LBL9" geneId="uncharacterized_H2LBL9"/>
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        <gene id="43" protId="H2ME04" geneId="AARS"/>
        <gene id="44" protId="H2N324" geneId="AARS2"/>
        <gene id="46" protId="H2LNX4" geneId="SDHA"/>
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        <gene id="49" protId="H2MMF7" geneId="ATP2A2 (1 of 2)"/>
        <gene id="50" protId="H2M854" geneId="ATP2A3"/>
        <gene id="52" protId="H2M7E9" geneId="TUFM"/>
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        <gene id="59" protId="H2LW86" geneId="CTPS (1 of 2)"/>
        <gene id="61" protId="H2LRN4" geneId="AFG3L2"/>
        <gene id="62" protId="H2L599" geneId="uncharacterized_H2L599"/>
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        <gene id="68" protId="H2N0L9" geneId="C22orf28"/>
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        <gene id="72" protId="H2MDQ6" geneId="DARS2"/>
        <gene id="74" protId="H2LMA4" geneId="ATP7A"/>
        <gene id="75" protId="H2L2X3" geneId="oleed"/>
        <gene id="77" protId="H2L3W7" geneId="PCCA"/>
        <gene id="78" protId="H2M830" geneId="MCCC1"/>
        <gene id="81" protId="H2LZK8" geneId="MAT2A (2 of 2)"/>
        <gene id="82" protId="H2LT37" geneId="MAT1A (1 of 2)"/>
        <gene id="83" protId="H2L8N2" geneId="Ola.14516"/>
        <gene id="85" protId="H2LKB9" geneId="GFPT2"/>
        <gene id="86" protId="H2M6R6" geneId="GFPT1"/>
        <gene id="88" protId="H2LPM0" geneId="ENO2 (1 of 2)"/>
        <gene id="89" protId="H2L918" geneId="Ola.4301"/>
        <gene id="90" protId="H2MXM8" geneId="ENO3"/>
        <gene id="91" protId="H2LLZ8" geneId="ENO1"/>
        <gene id="93" protId="H2LS29" geneId="ASS1"/>
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        <gene id="97" protId="H2M6U3" geneId="NDUFS2"/>
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        <gene id="104" protId="H2LQ09" geneId="GFM1"/>
        <gene id="106" protId="H2LUB5" geneId="PET112"/>
        <gene id="108" protId="H2M4C1" geneId="uncharacterized_H2M4C1"/>
        <gene id="109" protId="H2LJD0" geneId="ADSS"/>
        <gene id="110" protId="H2MR87" geneId="ADSSL1"/>
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        <gene id="122" protId="H2MU45" geneId="QRSL1"/>
        <gene id="124" protId="H2MC29" geneId="AHCY"/>
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        <gene id="126" protId="H2M594" geneId="AHCYL2 (1 of 2)"/>
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        <gene id="144" protId="H2N223" geneId="POLR2B"/>
        <gene id="145" protId="H2M5Z0" geneId="POLR3B"/>
        <gene id="147" protId="H2MS61" geneId="WRNIP1"/>
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        <gene id="151" protId="H2M9V7" geneId="GAPDH"/>
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        <gene id="166" protId="H2MT58" geneId="ABCB8"/>
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        <gene id="174" protId="H2M605" geneId="MSH6"/>
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        <gene id="178" protId="H2MF62" geneId="ALAD"/>
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        <gene id="182" protId="H2M454" geneId="GCAT"/>
        <gene id="184" protId="H2LVU1" geneId="ABCA3"/>
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        <gene id="188" protId="H2LLX9" geneId="ABCA4 (1 of 2)"/>
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        <gene id="190" protId="H2MDM8" geneId="ABCA5"/>
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        <gene id="196" protId="H2LDC1" geneId="STOML3 (2 of 2)"/>
        <gene id="197" protId="H2MAC9" geneId="STOM"/>
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        <gene id="236" protId="H2MSS6" geneId="GALE"/>
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        <gene id="490" protId="H2MER8" geneId="uncharacterized_H2MER8"/>
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        <gene id="521" protId="H2MAF8" geneId="MFSD3"/>
        <gene id="523" protId="H2MV55" geneId="C2orf56"/>
        <gene id="525" protId="H2N253" geneId="HARS2"/>
        <gene id="527" protId="H2L9D2" geneId="MRPL11"/>
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        <gene id="559" protId="H2MD18" geneId="PUS7L"/>
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        <gene id="562" protId="H2N1V2" geneId="GMPPA"/>
        <gene id="564" protId="H2M7V2" geneId="ISOC2"/>
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        <gene id="568" protId="H2MQ93" geneId="ISPD"/>
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        <gene id="571" protId="H2LJ68" geneId="ME2"/>
        <gene id="573" protId="H2LR58" geneId="ADHFE1"/>
        <gene id="575" protId="H2MUE6" geneId="TRMT61A"/>
        <gene id="577" protId="H2N2S3" geneId="NUDT5"/>
        <gene id="579" protId="H2MXR0" geneId="DPYSL3"/>
        <gene id="580" protId="H2M9M6" geneId="DPYSL2 (2 of 2)"/>
        <gene id="581" protId="H2N2H7" geneId="DPYSL4"/>
        <gene id="582" protId="H2LAZ6" geneId="DPYS"/>
        <gene id="583" protId="H2MTK4" geneId="DPYSL5"/>
        <gene id="585" protId="H2LF07" geneId="MRPS2"/>
        <gene id="587" protId="H2M264" geneId="MRRF"/>
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        <gene id="591" protId="H2LC16" geneId="SLC24A5"/>
        <gene id="592" protId="H2LAY1" geneId="SLC24A3 (2 of 2)"/>
        <gene id="593" protId="H2LCB7" geneId="uncharacterized_H2LCB7"/>
        <gene id="594" protId="H2M7Z7" geneId="SLC24A4"/>
        <gene id="595" protId="H2LT67" geneId="uncharacterized_H2LT67"/>
        <gene id="596" protId="H2LRX6" geneId="SLC24A1"/>
        <gene id="598" protId="H2MNF3" geneId="C14orf101"/>
        <gene id="600" protId="H2L3I7" geneId="Ola.5461"/>
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        <gene id="607" protId="H2MLF3" geneId="TXN2"/>
        <gene id="609" protId="H2L7C3" geneId="RUVBL1"/>
        <gene id="610" protId="H2M9D6" geneId="RUVBL2"/>
        <gene id="612" protId="H2LP76" geneId="PAPSS2"/>
        <gene id="613" protId="H2LR89" geneId="PAPSS1"/>
        <gene id="615" protId="H2M8W6" geneId="GALT"/>
        <gene id="618" protId="H2MDG9" geneId="SOD2"/>
        <gene id="620" protId="H2MK55" geneId="ETHE1"/>
        <gene id="622" protId="H2L8Q0" geneId="OMA1"/>
        <gene id="624" protId="H2MEK0" geneId="MRPL17"/>
        <gene id="626" protId="H2M771" geneId="RARS2"/>
        <gene id="628" protId="H2MMA6" geneId="NDUFA9"/>
        <gene id="630" protId="H2MY25" geneId="RPL23"/>
        <gene id="632" protId="H2M4L8" geneId="GRPEL1"/>
        <gene id="634" protId="H2MD35" geneId="ATPBD4"/>
        <gene id="636" protId="H2MHD6" geneId="YRDC"/>
        <gene id="638" protId="H2LS42" geneId="MRPL12"/>
        <gene id="640" protId="H2MN74" geneId="uncharacterized_H2MN74"/>
        <gene id="641" protId="H2LNY3" geneId="Ola.21579"/>
        <gene id="642" protId="H2M1E3" geneId="uncharacterized_H2M1E3"/>
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        <gene id="645" protId="H2L9G2" geneId="Ola.15148"/>
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        <gene id="728" protId="H2MCJ6" geneId="Ola.21317"/>
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        <gene id="730" protId="H2LBY1" geneId="uncharacterized_H2LBY1"/>
        <gene id="732" protId="H2MI89" geneId="C15orf40"/>
        <gene id="734" protId="H2LZ63" geneId="NAA50"/>
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        <gene id="738" protId="H2LTS9" geneId="RPL11"/>
        <gene id="740" protId="H2MZR7" geneId="MRPS16"/>
        <gene id="742" protId="H2LTC1" geneId="PPP2R1B"/>
        <gene id="743" protId="H2LR53" geneId="PPP4R1L"/>
        <gene id="745" protId="H2L9K3" geneId="DTYMK"/>
        <gene id="747" protId="H2LJ28" geneId="ELAC1"/>
        <gene id="749" protId="Q9W6X3" geneId="hspe1"/>
        <gene id="751" protId="H2L4Q1" geneId="RPS3"/>
        <gene id="753" protId="H2M3T3" geneId="AMMECR1"/>
        <gene id="755" protId="H2L7Y3" geneId="BCAT2"/>
        <gene id="757" protId="H2MEF9" geneId="NUDT4"/>
        <gene id="759" protId="H2LGF8" geneId="RNASEH2A"/>
        <gene id="761" protId="H2LYL5" geneId="CALB2 (2 of 2)"/>
        <gene id="762" protId="H2LJB2" geneId="SCGN"/>
        <gene id="764" protId="H2MDS9" geneId="RPS15A"/>
        <gene id="766" protId="H2N0S3" geneId="ADAT2"/>
        <gene id="768" protId="H2LCC8" geneId="PYGB"/>
        <gene id="769" protId="H2LYL1" geneId="PYGL"/>
        <gene id="770" protId="H2M8T3" geneId="PYGM (1 of 2)"/>
        <gene id="772" protId="H2LCC1" geneId="Ola.27079"/>
        <gene id="773" protId="H2MU40" geneId="RAD51"/>
        <gene id="774" protId="H2N0C6" geneId="RAD51C"/>
        <gene id="776" protId="H2MD33" geneId="PTS"/>
        <gene id="778" protId="H2M6W7" geneId="B3GNTL1"/>
        <gene id="780" protId="H2MAX8" geneId="TTC32"/>
        <gene id="782" protId="H2MPG3" geneId="ACYP1"/>
        <gene id="784" protId="H2LLW5" geneId="RPS15"/>
        <gene id="786" protId="H2LF30" geneId="Ola.18369"/>
        <gene id="807" protId="H2MQE2" geneId="SSBP1"/>
        <gene id="809" protId="H2MS20" geneId="Ola.8711"/>
        <gene id="811" protId="H2LJU9" geneId="IDI2"/>
        <gene id="813" protId="H2LLW3" geneId="RPL9"/>
        <gene id="815" protId="H2N1W8" geneId="PDXK"/>
        <gene id="817" protId="H2MSK2" geneId="QPCT"/>
        <gene id="818" protId="H2LQX6" geneId="QPCTL"/>
        <gene id="820" protId="H2L5W1" geneId="APIP"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="O.latipes" link="http://www.uniprot.org/taxonomy/8090"/>
    </notes>
  </species>
  <species name="Thermodesulfovibrio yellowstonii " NCBITaxId="289376">
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    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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