<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="317" inparalogs="885"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Nomascus leucogenys " NCBITaxId="61853">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="G1R6E9" geneId="CPS1"/>
        <gene id="4" protId="G1QSG4" geneId="LOC100604681"/>
        <gene id="6" protId="G1RCT8" geneId="HSPA9"/>
        <gene id="8" protId="G1RGL4" geneId="ACSS2"/>
        <gene id="10" protId="G1S676" geneId="GUF1"/>
        <gene id="12" protId="G1R3G6" geneId="VARS"/>
        <gene id="13" protId="G1R100" geneId="uncharacterized_G1R100"/>
        <gene id="15" protId="G1QIL1" geneId="LONP2"/>
        <gene id="17" protId="G1RK60" geneId="uncharacterized_G1RK60"/>
        <gene id="19" protId="G1S6Q0" geneId="uncharacterized_G1S6Q0"/>
        <gene id="21" protId="G1RUL6" geneId="IARS2"/>
        <gene id="23" protId="G1R5A6" geneId="HSPD1"/>
        <gene id="25" protId="G1QQK6" geneId="ATP2C1"/>
        <gene id="26" protId="G1RK62" geneId="ATP2C2"/>
        <gene id="28" protId="G1R2A5" geneId="uncharacterized_G1R2A5"/>
        <gene id="30" protId="G1R6H9" geneId="uncharacterized_G1R6H9"/>
        <gene id="31" protId="G1SB67" geneId="LOC100604176"/>
        <gene id="32" protId="G1SB96" geneId="LOC100596468"/>
        <gene id="33" protId="G1RU60" geneId="LOC100594212"/>
        <gene id="35" protId="G1RSV7" geneId="ATP1A2"/>
        <gene id="36" protId="G1QZ45" geneId="ATP1A1"/>
        <gene id="37" protId="G1RSP5" geneId="uncharacterized_G1RSP5"/>
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        <gene id="39" protId="G1RKB8" geneId="uncharacterized_G1RKB8"/>
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        <gene id="42" protId="G1QZH3" geneId="ACSM4"/>
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        <gene id="46" protId="G1QL97" geneId="uncharacterized_G1QL97"/>
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        <gene id="49" protId="G1RZJ0" geneId="uncharacterized_G1RZJ0"/>
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        <gene id="74" protId="G1RGG1" geneId="GFPT1"/>
        <gene id="76" protId="G1S1Q5" geneId="uncharacterized_G1S1Q5"/>
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        <gene id="80" protId="G1RIF3" geneId="MAT1A"/>
        <gene id="81" protId="G1QMI7" geneId="LOC100606800"/>
        <gene id="83" protId="G1QYE8" geneId="ENO2"/>
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        <gene id="85" protId="G1S6N1" geneId="ENO3"/>
        <gene id="87" protId="G1R278" geneId="LOC100590008"/>
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        <gene id="112" protId="G1S6F5" geneId="LOC100601978"/>
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        <gene id="131" protId="G1QL56" geneId="uncharacterized_G1QL56"/>
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    <notes>
      <additionalInformation abbreviation="N.leucogenys" link="http://www.uniprot.org/taxonomy/61853"/>
    </notes>
  </species>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="1">
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="780"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="0.295"/>
      </geneRef>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="764"/>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
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