<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2463" inparalogs="10327"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="N.gruberi" link="http://www.uniprot.org/taxonomy/5762"/>
    </notes>
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        <gene id="10220" protId="K4CN40" geneId="Solyc08g076800.2"/>
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        <gene id="10241" protId="K4CW93" geneId="Solyc09g090670.2"/>
        <gene id="10243" protId="K4B9R4" geneId="Solyc02g080430.2"/>
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        <gene id="10247" protId="K4DGG4" geneId="Solyc12g077420.1"/>
        <gene id="10249" protId="Q2MIB8" geneId="rps16"/>
        <gene id="10251" protId="K4AQR8" geneId="Solyc00g028540.1"/>
        <gene id="10257" protId="K4DH70" geneId="Solyc12g095970.1"/>
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        <gene id="10294" protId="K4C6T9" geneId="Solyc06g061090.2"/>
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        <gene id="10298" protId="K4CHG3" geneId="Solyc07g064840.1"/>
        <gene id="10300" protId="Q6TFM2" geneId="LOC544263"/>
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        <gene id="10303" protId="K4B8S9" geneId="Solyc02g077020.2"/>
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        <gene id="10310" protId="K4B8T8" geneId="Solyc02g077110.2"/>
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        <gene id="10312" protId="K4DEA6" geneId="Solyc12g036490.1"/>
        <gene id="10313" protId="K4D9G3" geneId="Solyc11g065530.1"/>
        <gene id="10314" protId="K4DCH7" geneId="Solyc12g010910.1"/>
        <gene id="10315" protId="K4CG55" geneId="Solyc07g055160.2"/>
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        <gene id="10317" protId="K4CJP3" geneId="Solyc08g022240.1"/>
        <gene id="10318" protId="K4CNG8" geneId="Solyc08g078090.1"/>
        <gene id="10319" protId="K4AR28" geneId="Solyc00g056680.1"/>
        <gene id="10320" protId="K4C6R7" geneId="Solyc06g060870.1"/>
        <gene id="10321" protId="K4C270" geneId="Solyc05g053910.1"/>
        <gene id="10322" protId="K4C271" geneId="Solyc05g053920.1"/>
        <gene id="10323" protId="K4CX16" geneId="Solyc09g098460.1"/>
        <gene id="10324" protId="K4DHP6" geneId="Solyc12g098730.1"/>
        <gene id="10325" protId="K4CZE0" geneId="Solyc10g038170.1"/>
        <gene id="10327" protId="K4CSN3" geneId="Solyc09g031770.2"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.lycopersicum" link="http://www.uniprot.org/taxonomy/4081"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="3300"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="2068"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1934"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="1918"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="0.112"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="1825"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
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