<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="1681" inparalogs="4703"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Latimeria chalumnae PE=4 SV=1" NCBITaxId="7897">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="3" protId="H2ZZW7" geneId="DNAH5"/>
        <gene id="4" protId="H2ZXC8" geneId="DNAH8"/>
        <gene id="6" protId="H3BFH9" geneId="uncharacterized_H3BFH9"/>
        <gene id="8" protId="H3BBD5" geneId="DNAH17"/>
        <gene id="9" protId="H2ZZM9" geneId="DNAH11"/>
        <gene id="10" protId="H3ASB2" geneId="uncharacterized_H3ASB2"/>
        <gene id="11" protId="H3A2B2" geneId="uncharacterized_H3A2B2"/>
        <gene id="13" protId="H3A7W8" geneId="DNAH2"/>
        <gene id="15" protId="H3AQI5" geneId="PRPF8"/>
        <gene id="17" protId="H3B1H3" geneId="DYNC1H1"/>
        <gene id="19" protId="H3B9U9" geneId="MTR"/>
        <gene id="21" protId="H3BCH2" geneId="POLE"/>
        <gene id="23" protId="H3AU29" geneId="CAD"/>
        <gene id="25" protId="H2ZS81" geneId="SNRNP200"/>
        <gene id="27" protId="H3AU80" geneId="ACACB"/>
        <gene id="28" protId="H3BFJ1" geneId="ACACA"/>
        <gene id="30" protId="H3AN14" geneId="CLTC"/>
        <gene id="31" protId="H3AKV2" geneId="CLTCL1"/>
        <gene id="33" protId="H2ZUU5" geneId="uncharacterized_H2ZUU5"/>
        <gene id="35" protId="H3BI03" geneId="IARS"/>
        <gene id="37" protId="H2ZX41" geneId="DNAJC13"/>
        <gene id="39" protId="H3BBW8" geneId="POLR3B"/>
        <gene id="41" protId="H3A6N0" geneId="uncharacterized_H3A6N0"/>
        <gene id="42" protId="H3ASK6" geneId="uncharacterized_H3ASK6"/>
        <gene id="44" protId="H3A0Y3" geneId="POLR2B"/>
        <gene id="46" protId="H3BGV0" geneId="POLR3A"/>
        <gene id="48" protId="H3A5L4" geneId="TOP2B"/>
        <gene id="49" protId="H3ALH9" geneId="TOP2A"/>
        <gene id="51" protId="H3B666" geneId="POLD1"/>
        <gene id="53" protId="H3AB35" geneId="uncharacterized_H3AB35"/>
        <gene id="54" protId="H2ZV91" geneId="uncharacterized_H2ZV91"/>
        <gene id="55" protId="H2ZV15" geneId="HSPA8"/>
        <gene id="56" protId="H3AWU4" geneId="uncharacterized_H3AWU4"/>
        <gene id="57" protId="H3B4D4" geneId="uncharacterized_H3B4D4"/>
        <gene id="58" protId="H3B597" geneId="uncharacterized_H3B597"/>
        <gene id="62" protId="H3AVP5" geneId="POLR2A"/>
        <gene id="64" protId="H3AQ38" geneId="HSP90AB1"/>
        <gene id="65" protId="H2ZTU7" geneId="uncharacterized_H2ZTU7"/>
        <gene id="66" protId="H3B357" geneId="HSP90AA1"/>
        <gene id="69" protId="H3AKC9" geneId="GLDC"/>
        <gene id="71" protId="H3AI30" geneId="RRM1"/>
        <gene id="73" protId="H3B0N9" geneId="WDR35"/>
        <gene id="75" protId="H3AL63" geneId="MUT"/>
        <gene id="77" protId="H3BDY4" geneId="ATP2A3"/>
        <gene id="78" protId="H3ANB8" geneId="uncharacterized_H3ANB8"/>
        <gene id="79" protId="M3XI19" geneId="ATP2A2"/>
        <gene id="80" protId="H2ZU49" geneId="uncharacterized_H2ZU49"/>
        <gene id="82" protId="H3AWB6" geneId="VCP"/>
        <gene id="83" protId="H3B882" geneId="uncharacterized_H3B882"/>
        <gene id="85" protId="H3AKY2" geneId="SKIV2L2"/>
        <gene id="87" protId="H3ALQ7" geneId="LARS"/>
        <gene id="89" protId="H3B4P9" geneId="TUBB"/>
        <gene id="90" protId="H3A7C7" geneId="uncharacterized_H3A7C7"/>
        <gene id="91" protId="H3A954" geneId="uncharacterized_H3A954"/>
        <gene id="92" protId="H3ASR3" geneId="uncharacterized_H3ASR3"/>
        <gene id="93" protId="H3AS44" geneId="uncharacterized_H3AS44"/>
        <gene id="94" protId="H3A580" geneId="TUBB6"/>
        <gene id="95" protId="H3AGW1" geneId="TUBB3"/>
        <gene id="100" protId="H3AK74" geneId="COPA"/>
        <gene id="102" protId="H3BFV4" geneId="HSPA5"/>
        <gene id="104" protId="H3BI79" geneId="uncharacterized_H3BI79"/>
        <gene id="105" protId="H3AF19" geneId="TUBA1A"/>
        <gene id="106" protId="H3BI74" geneId="uncharacterized_H3BI74"/>
        <gene id="107" protId="H3BI69" geneId="uncharacterized_H3BI69"/>
        <gene id="108" protId="H3AW62" geneId="uncharacterized_H3AW62"/>
        <gene id="109" protId="H3AGU3" geneId="TUBA4A"/>
        <gene id="110" protId="H3BF86" geneId="TUBA8"/>
        <gene id="113" protId="H3ADM6" geneId="MVP"/>
        <gene id="115" protId="H3AJG5" geneId="ATP6V1A"/>
        <gene id="117" protId="H3B1D3" geneId="uncharacterized_H3B1D3"/>
        <gene id="119" protId="H3A6E7" geneId="NAT10"/>
        <gene id="121" protId="H2ZWJ3" geneId="VARS2"/>
        <gene id="122" protId="H3B5X3" geneId="VARS"/>
        <gene id="124" protId="H3B017" geneId="ABCE1"/>
        <gene id="126" protId="H3B0D1" geneId="TOP3B"/>
        <gene id="128" protId="H3AZ66" geneId="IFT122"/>
        <gene id="130" protId="H3A782" geneId="AARS"/>
        <gene id="132" protId="H3AIP5" geneId="uncharacterized_H3AIP5"/>
        <gene id="133" protId="H3AJR4" geneId="ABCA1"/>
        <gene id="134" protId="H3B4F4" geneId="uncharacterized_H3B4F4"/>
        <gene id="135" protId="H3AJZ5" geneId="ABCA4"/>
        <gene id="136" protId="H3AAY4" geneId="ABCA2"/>
        <gene id="137" protId="H3B2R0" geneId="ABCA12"/>
        <gene id="145" protId="H3AYJ2" geneId="ATP9A"/>
        <gene id="146" protId="H3A6R4" geneId="ATP9B"/>
        <gene id="148" protId="H3AEC4" geneId="SDHA"/>
        <gene id="150" protId="H2ZV96" geneId="IREB2"/>
        <gene id="152" protId="H3B696" geneId="uncharacterized_H3B696"/>
        <gene id="153" protId="H3A0X9" geneId="EEF1A1"/>
        <gene id="154" protId="H3B6F8" geneId="uncharacterized_H3B6F8"/>
        <gene id="158" protId="H2ZY13" geneId="ABCB5"/>
        <gene id="159" protId="H3AJ76" geneId="uncharacterized_H3AJ76"/>
        <gene id="162" protId="H3AKV9" geneId="COPB2"/>
        <gene id="164" protId="H2ZX54" geneId="DHX8"/>
        <gene id="166" protId="H3AL07" geneId="HSPA9"/>
        <gene id="171" protId="H3ALQ1" geneId="TARS"/>
        <gene id="172" protId="H3BH99" geneId="TARSL2"/>
        <gene id="173" protId="H3AJS0" geneId="TARS2"/>
        <gene id="175" protId="H3B8B4" geneId="ATP13A1"/>
        <gene id="177" protId="H3AEU0" geneId="DHX15"/>
        <gene id="179" protId="H2ZYP0" geneId="CCT5"/>
        <gene id="181" protId="H3BGI7" geneId="ACSS2"/>
        <gene id="184" protId="H3AQQ2" geneId="OGDHL"/>
        <gene id="185" protId="H3BAN4" geneId="OGDH"/>
        <gene id="187" protId="H2ZU31" geneId="GPI"/>
        <gene id="189" protId="H3AEE1" geneId="SMARCA5"/>
        <gene id="190" protId="H3BAQ9" geneId="SMARCA1"/>
        <gene id="192" protId="H3AY53" geneId="PCCA"/>
        <gene id="194" protId="H3BEP4" geneId="RUVBL2"/>
        <gene id="196" protId="H3A857" geneId="CCT2"/>
        <gene id="198" protId="H3AS78" geneId="MCM2"/>
        <gene id="200" protId="M3XIT3" geneId="ABCC6"/>
        <gene id="201" protId="H2ZW74" geneId="uncharacterized_H2ZW74"/>
        <gene id="202" protId="H3AES0" geneId="ABCC3"/>
        <gene id="210" protId="H3AD90" geneId="NDUFV1"/>
        <gene id="212" protId="H3BA48" geneId="MTHFD1"/>
        <gene id="214" protId="H3BIH2" geneId="AHCY"/>
        <gene id="216" protId="H3AQW1" geneId="SMC3"/>
        <gene id="218" protId="H3BCM2" geneId="GANAB"/>
        <gene id="219" protId="H3A4H8" geneId="GANC"/>
        <gene id="221" protId="H3BI64" geneId="ATP2B2"/>
        <gene id="222" protId="H3ADK4" geneId="ATP2B3"/>
        <gene id="223" protId="H3A9B9" geneId="ATP2B1"/>
        <gene id="224" protId="H3AUN5" geneId="ATP2B4"/>
        <gene id="226" protId="H3ARK4" geneId="DIS3"/>
        <gene id="228" protId="H3BB48" geneId="ATP6V1B2"/>
        <gene id="229" protId="H3A405" geneId="uncharacterized_H3A405"/>
        <gene id="231" protId="H2ZW51" geneId="GTPBP4"/>
        <gene id="233" protId="H3B8T1" geneId="EFTUD1"/>
        <gene id="235" protId="H2ZXQ2" geneId="UBA1"/>
        <gene id="236" protId="H3ARY3" geneId="UBA7"/>
        <gene id="237" protId="H3B1G5" geneId="UBA6"/>
        <gene id="239" protId="H3AKC7" geneId="uncharacterized_H3AKC7"/>
        <gene id="241" protId="H3AT05" geneId="SPAG6"/>
        <gene id="243" protId="H3B4J0" geneId="TCP1"/>
        <gene id="245" protId="H2ZWI9" geneId="IFT88"/>
        <gene id="247" protId="H3AFT5" geneId="GMPS"/>
        <gene id="249" protId="H3A6P4" geneId="uncharacterized_H3A6P4"/>
        <gene id="250" protId="H3B556" geneId="ATP8B4"/>
        <gene id="251" protId="H3B1E3" geneId="ATP8B2"/>
        <gene id="252" protId="H2ZWK6" geneId="ATP8B1"/>
        <gene id="253" protId="M3XHC6" geneId="ATP8B3"/>
        <gene id="254" protId="H3AEG9" geneId="ATP10B"/>
        <gene id="255" protId="H3A4T4" geneId="ATP10D"/>
        <gene id="258" protId="H3APY1" geneId="CCT7"/>
        <gene id="260" protId="H3A0U9" geneId="KIAA0196"/>
        <gene id="262" protId="H3B286" geneId="PSMC1"/>
        <gene id="264" protId="H3AXQ9" geneId="COPB1"/>
        <gene id="266" protId="H3BHY3" geneId="uncharacterized_H3BHY3"/>
        <gene id="268" protId="H3AAN7" geneId="uncharacterized_H3AAN7"/>
        <gene id="269" protId="H3AP83" geneId="MYO1F"/>
        <gene id="270" protId="H2ZSM1" geneId="MYO1E"/>
        <gene id="272" protId="H3AUF4" geneId="EIF5B"/>
        <gene id="274" protId="H3AWE2" geneId="GFM1"/>
        <gene id="276" protId="H3A6J3" geneId="uncharacterized_H3A6J3"/>
        <gene id="277" protId="H3A2M7" geneId="PREP"/>
        <gene id="279" protId="H3A440" geneId="uncharacterized_H3A440"/>
        <gene id="280" protId="H3AUT1" geneId="ACTC1"/>
        <gene id="281" protId="H3AVL6" geneId="ACTA1"/>
        <gene id="282" protId="H3A626" geneId="uncharacterized_H3A626"/>
        <gene id="283" protId="H3BBJ9" geneId="uncharacterized_H3BBJ9"/>
        <gene id="284" protId="H3A754" geneId="uncharacterized_H3A754"/>
        <gene id="285" protId="H2ZUX4" geneId="uncharacterized_H2ZUX4"/>
        <gene id="286" protId="H3A4B1" geneId="ACTG2"/>
        <gene id="287" protId="H3A7F0" geneId="uncharacterized_H3A7F0"/>
        <gene id="288" protId="H3BGS4" geneId="ACTBL2"/>
        <gene id="290" protId="H2ZZK0" geneId="PSMC2"/>
        <gene id="292" protId="H3AQX3" geneId="PSMC5"/>
        <gene id="294" protId="H2ZTV8" geneId="uncharacterized_H2ZTV8"/>
        <gene id="296" protId="H2ZVT3" geneId="DHX57"/>
        <gene id="298" protId="H3BFD1" geneId="CCT4"/>
        <gene id="300" protId="H2ZU93" geneId="SMC1A"/>
        <gene id="301" protId="H3B892" geneId="SMC1B"/>
        <gene id="303" protId="H3BC85" geneId="DDX6"/>
        <gene id="304" protId="H3B5V2" geneId="uncharacterized_H3B5V2"/>
        <gene id="306" protId="H3B646" geneId="HSPD1"/>
        <gene id="310" protId="H3AA40" geneId="WDR69"/>
        <gene id="312" protId="H3BHP5" geneId="NFS1"/>
        <gene id="314" protId="H3AM02" geneId="CCT3"/>
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        <gene id="317" protId="H3BG06" geneId="GFPT1"/>
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        <gene id="320" protId="H3B3T4" geneId="IDH1"/>
        <gene id="322" protId="H3AG44" geneId="SEC23A"/>
        <gene id="323" protId="H3AIC7" geneId="SEC23B"/>
        <gene id="325" protId="H3AKR8" geneId="XRN1"/>
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        <gene id="331" protId="H2ZUS7" geneId="uncharacterized_H2ZUS7"/>
        <gene id="332" protId="H3AQY8" geneId="PGM5"/>
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        <gene id="338" protId="H3B9Q4" geneId="uncharacterized_H3B9Q4"/>
        <gene id="339" protId="H3ACZ9" geneId="KARS"/>
        <gene id="341" protId="H3AIE0" geneId="IMPDH1"/>
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        <gene id="384" protId="H3A776" geneId="uncharacterized_H3A776"/>
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        <gene id="408" protId="H3B8J9" geneId="ATP6V0A4"/>
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        <gene id="417" protId="H3A9P8" geneId="ATP7B"/>
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        <gene id="427" protId="H3AUS8" geneId="uncharacterized_H3AUS8"/>
        <gene id="429" protId="H3BI66" geneId="CS"/>
        <gene id="432" protId="H3AKB8" geneId="TOP3A"/>
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        <gene id="442" protId="H3AK78" geneId="uncharacterized_H3AK78"/>
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        <gene id="446" protId="M3XI24" geneId="ABCF3"/>
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        <gene id="458" protId="H3A988" geneId="UGGT2"/>
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        <gene id="463" protId="H2ZSL2" geneId="IFT140"/>
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        <gene id="468" protId="H3A6E9" geneId="uncharacterized_H3A6E9"/>
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        <gene id="506" protId="H3AKC6" geneId="PIK3CD"/>
        <gene id="507" protId="H3B6T5" geneId="PIK3CA"/>
        <gene id="508" protId="H3AV31" geneId="uncharacterized_H3AV31"/>
        <gene id="510" protId="H3ARS4" geneId="CNOT1"/>
        <gene id="512" protId="H3A9R5" geneId="QARS"/>
        <gene id="514" protId="H3AR45" geneId="uncharacterized_H3AR45"/>
        <gene id="516" protId="H3AGK3" geneId="uncharacterized_H3AGK3"/>
        <gene id="518" protId="H3AWV3" geneId="PITRM1"/>
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        <gene id="1995" protId="H3A0E8" geneId="uncharacterized_H3A0E8"/>
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        <gene id="2083" protId="M3XHU7" geneId="TKT"/>
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    <notes>
      <additionalInformation abbreviation="L.chalumnae" link="http://www.uniprot.org/taxonomy/7897"/>
    </notes>
  </species>
  <species name="Leishmania infantum " NCBITaxId="5671">
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