<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2446" inparalogs="6640"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Loxodonta africana " NCBITaxId="9785">
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    </database>
    <notes>
      <additionalInformation abbreviation="L.africana" link="http://www.uniprot.org/taxonomy/9785"/>
    </notes>
  </species>
  <species name="Penicillium digitatum " NCBITaxId="1170229">
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        <gene id="6083" protId="K9FTL5" geneId="PDIG_79110"/>
        <gene id="6085" protId="K9G0K6" geneId="PDIG_26160"/>
        <gene id="6087" protId="K9GAN0" geneId="PDIG_10970"/>
        <gene id="6089" protId="K9FRE7" geneId="PDIG_84420"/>
        <gene id="6091" protId="K9F7T7" geneId="PDIG_83940"/>
        <gene id="6121" protId="K9G3E8" geneId="PDIG_63130"/>
        <gene id="6124" protId="K9G3M7" geneId="PDIG_26230"/>
        <gene id="6127" protId="K9FXK8" geneId="PDIG_33060"/>
        <gene id="6129" protId="K9G243" geneId="PDIG_22210"/>
        <gene id="6131" protId="K9GAX0" geneId="PDIG_05820"/>
        <gene id="6133" protId="K9G3Z0" geneId="PDIG_22150"/>
        <gene id="6135" protId="K9H250" geneId="PDIG_03960"/>
        <gene id="6143" protId="K9FB78" geneId="PDIG_77760"/>
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        <gene id="6146" protId="K9FSN3" geneId="PDIG_50000"/>
        <gene id="6147" protId="K9FMC2" geneId="PDIG_54610"/>
        <gene id="6148" protId="K9GQ78" geneId="PDIG_27140"/>
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        <gene id="6152" protId="K9GKB0" geneId="PDIG_36560"/>
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        <gene id="6159" protId="K9GAN5" geneId="PDIG_11020"/>
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        <gene id="6193" protId="K9GNN6" geneId="PDIG_30580"/>
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        <gene id="6208" protId="K9FDI2" geneId="PDIG_73590"/>
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        <gene id="6216" protId="K9G1L5" geneId="PDIG_27590"/>
        <gene id="6219" protId="K9FCS8" geneId="PDIG_80940"/>
        <gene id="6222" protId="K9GRH4" geneId="PDIG_16220"/>
        <gene id="6225" protId="K9GSX6" geneId="PDIG_21750"/>
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        <gene id="6230" protId="K9FFW5" geneId="PDIG_69050"/>
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        <gene id="6234" protId="K9GZA3" geneId="PDIG_09810"/>
        <gene id="6236" protId="K9GWJ5" geneId="PDIG_04600"/>
        <gene id="6238" protId="K9FXR6" geneId="PDIG_32340"/>
        <gene id="6240" protId="K9FR77" geneId="PDIG_49100"/>
        <gene id="6242" protId="K9GLE6" geneId="PDIG_25210"/>
        <gene id="6245" protId="K9G9V7" geneId="PDIG_07430"/>
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        <gene id="6247" protId="K9GWH4" geneId="PDIG_06380"/>
        <gene id="6248" protId="K9G678" geneId="PDIG_18150"/>
        <gene id="6249" protId="K9FUG0" geneId="PDIG_42050"/>
        <gene id="6255" protId="K9FW82" geneId="PDIG_40820"/>
        <gene id="6258" protId="K9FTR5" geneId="PDIG_89520"/>
        <gene id="6261" protId="K9FTN8" geneId="PDIG_40240"/>
        <gene id="6263" protId="K9GBI2" geneId="PDIG_08160"/>
        <gene id="6264" protId="K9FNY3" geneId="PDIG_51770"/>
        <gene id="6267" protId="K9FSM1" geneId="PDIG_42610"/>
        <gene id="6270" protId="K9GXL9" geneId="PDIG_03260"/>
        <gene id="6273" protId="K9GLM9" geneId="PDIG_25030"/>
        <gene id="6275" protId="K9FMX0" geneId="PDIG_53930"/>
        <gene id="6277" protId="K9GBN6" geneId="PDIG_46130"/>
        <gene id="6279" protId="K9GE97" geneId="PDIG_03110"/>
        <gene id="6282" protId="K9FIZ1" geneId="PDIG_69570"/>
        <gene id="6285" protId="K9FE64" geneId="PDIG_71400"/>
        <gene id="6287" protId="K9GJ37" geneId="PDIG_31760"/>
        <gene id="6289" protId="K9FY83" geneId="PDIG_81880"/>
        <gene id="6291" protId="K9FAV6" geneId="PDIG_84630"/>
        <gene id="6293" protId="K9G1Q0" geneId="PDIG_66570"/>
        <gene id="6295" protId="K9FYE0" geneId="PDIG_71330"/>
        <gene id="6307" protId="K9G3P2" geneId="PDIG_23240"/>
        <gene id="6315" protId="K9F9J2" geneId="PDIG_78880"/>
        <gene id="6317" protId="K9GH39" geneId="PDIG_34690"/>
        <gene id="6318" protId="K9F6P9" geneId="PDIG_87360"/>
        <gene id="6319" protId="K9FSU6" geneId="PDIG_91080"/>
        <gene id="6320" protId="K9FUW0" geneId="PDIG_77500"/>
        <gene id="6324" protId="K9F9G5" geneId="PDIG_78580"/>
        <gene id="6327" protId="K9GBR3" geneId="PDIG_08580"/>
        <gene id="6330" protId="K9GAP2" geneId="PDIG_56550"/>
        <gene id="6333" protId="K9G5W3" geneId="PDIG_57510"/>
        <gene id="6336" protId="K9G927" geneId="PDIG_60020"/>
        <gene id="6338" protId="K9FKP6" geneId="PDIG_66960"/>
        <gene id="6340" protId="K9F727" geneId="PDIG_84760"/>
        <gene id="6342" protId="K9FU06" geneId="PDIG_77940"/>
        <gene id="6344" protId="K9GCW0" geneId="PDIG_42740"/>
        <gene id="6346" protId="K9H0Q5" geneId="PDIG_07490"/>
        <gene id="6348" protId="K9GGZ8" geneId="PDIG_44350"/>
        <gene id="6350" protId="K9G283" geneId="PDIG_21960"/>
        <gene id="6352" protId="K9GG26" geneId="PDIG_45510"/>
        <gene id="6356" protId="K9GD94" geneId="PDIG_00670"/>
        <gene id="6359" protId="K9G6Z4" geneId="PDIG_19110"/>
        <gene id="6361" protId="K9F954" geneId="PDIG_81320"/>
        <gene id="6363" protId="K9FK76" geneId="PDIG_60780"/>
        <gene id="6365" protId="K9FBD0" geneId="PDIG_76960"/>
        <gene id="6367" protId="K9GY67" geneId="PDIG_12690"/>
        <gene id="6373" protId="K9F8H8" geneId="PDIG_83780"/>
        <gene id="6374" protId="K9G331" geneId="PDIG_24000"/>
        <gene id="6375" protId="K9GAH2" geneId="PDIG_06450"/>
        <gene id="6376" protId="K9G0R3" geneId="PDIG_76290"/>
        <gene id="6377" protId="K9FMQ6" geneId="PDIG_53530"/>
        <gene id="6378" protId="K9FQR5" geneId="PDIG_49620"/>
        <gene id="6383" protId="K9FMY3" geneId="PDIG_60300"/>
        <gene id="6387" protId="K9FD77" geneId="PDIG_74680"/>
        <gene id="6389" protId="K9FFH1" geneId="PDIG_69800"/>
        <gene id="6390" protId="K9GBA0" geneId="PDIG_45080"/>
        <gene id="6393" protId="K9GFF2" geneId="PDIG_00590"/>
        <gene id="6396" protId="K9GWS1" geneId="PDIG_14430"/>
        <gene id="6398" protId="K9G468" geneId="PDIG_19440"/>
        <gene id="6400" protId="K9GA21" geneId="PDIG_58770"/>
        <gene id="6402" protId="K9FRL5" geneId="PDIG_46350"/>
        <gene id="6406" protId="K9GHP8" geneId="PDIG_41770"/>
        <gene id="6409" protId="K9FGR0" geneId="PDIG_65590"/>
        <gene id="6411" protId="K9FUK3" geneId="PDIG_45470"/>
        <gene id="6413" protId="K9FWP4" geneId="PDIG_74170"/>
        <gene id="6415" protId="K9FQV4" geneId="PDIG_54980"/>
        <gene id="6417" protId="K9H1K1" geneId="PDIG_04930"/>
        <gene id="6419" protId="K9G5E7" geneId="PDIG_20150"/>
        <gene id="6421" protId="K9FI53" geneId="PDIG_67630"/>
        <gene id="6423" protId="K9FVH5" geneId="PDIG_38190"/>
        <gene id="6424" protId="K9GJX4" geneId="PDIG_28990"/>
        <gene id="6426" protId="K9FV48" geneId="PDIG_40580"/>
        <gene id="6428" protId="K9G1X3" geneId="PDIG_23500"/>
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        <gene id="6470" protId="K9GS80" geneId="PDIG_22760"/>
        <gene id="6473" protId="K9F5T6" geneId="PDIG_87220"/>
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        <gene id="6478" protId="K9FV35" geneId="PDIG_38570"/>
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        <gene id="6482" protId="K9GAC7" geneId="PDIG_11950"/>
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        <gene id="6486" protId="K9GFL5" geneId="PDIG_00820"/>
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        <gene id="6500" protId="K9FG20" geneId="PDIG_69440"/>
        <gene id="6502" protId="K9GFZ5" geneId="USB1"/>
        <gene id="6504" protId="K9GH20" geneId="PDIG_35360"/>
        <gene id="6511" protId="K9FAW4" geneId="PDIG_76720"/>
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        <gene id="6516" protId="K9G6T5" geneId="PDIG_67550"/>
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        <gene id="6520" protId="K9G3C6" geneId="PDIG_20530"/>
        <gene id="6522" protId="K9GBA8" geneId="PDIG_03850"/>
        <gene id="6525" protId="K9FT52" geneId="PDIG_40800"/>
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        <gene id="6528" protId="K9FR43" geneId="PDIG_53250"/>
        <gene id="6530" protId="K9FF72" geneId="PDIG_69960"/>
        <gene id="6532" protId="K9FVY6" geneId="PDIG_39160"/>
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        <gene id="6536" protId="K9FXN4" geneId="PDIG_73040"/>
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        <gene id="6541" protId="K9FEH3" geneId="PDIG_72220"/>
        <gene id="6543" protId="K9FRM7" geneId="PDIG_48280"/>
        <gene id="6545" protId="K9F6H0" geneId="PDIG_87060"/>
        <gene id="6547" protId="K9H2H7" geneId="PDIG_03460"/>
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        <gene id="6557" protId="K9F8N0" geneId="PDIG_83310"/>
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        <gene id="6561" protId="K9GBN2" geneId="PDIG_08130"/>
        <gene id="6563" protId="K9G7X9" geneId="PDIG_62760"/>
        <gene id="6565" protId="K9GSP4" geneId="PDIG_21820"/>
        <gene id="6568" protId="K9F9I5" geneId="PDIG_87190"/>
        <gene id="6570" protId="K9F6K5" geneId="PDIG_87890"/>
        <gene id="6572" protId="K9FD28" geneId="PDIG_74280"/>
        <gene id="6574" protId="K9GLY8" geneId="PDIG_33720"/>
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        <gene id="6582" protId="K9F5C4" geneId="PDIG_90930"/>
        <gene id="6583" protId="K9GWA9" geneId="PDIG_07260"/>
        <gene id="6586" protId="K9GXQ5" geneId="PDIG_13520"/>
        <gene id="6588" protId="K9FE30" geneId="PDIG_72800"/>
        <gene id="6590" protId="K9FEN8" geneId="PDIG_71140"/>
        <gene id="6592" protId="K9FAP0" geneId="PDIG_78150"/>
        <gene id="6594" protId="K9H1R2" geneId="PDIG_05830"/>
        <gene id="6596" protId="K9FTB4" geneId="PDIG_47760"/>
        <gene id="6598" protId="K9FQN2" geneId="PDIG_85140"/>
        <gene id="6600" protId="K9GMJ4" geneId="PDIG_22630"/>
        <gene id="6602" protId="K9GW98" geneId="PDIG_07160"/>
        <gene id="6606" protId="K9G0U2" geneId="PDIG_29180"/>
        <gene id="6610" protId="K9GR55" geneId="PDIG_24910"/>
        <gene id="6613" protId="K9FQR2" geneId="PDIG_85390"/>
        <gene id="6616" protId="K9GX70" geneId="PDIG_03680"/>
        <gene id="6618" protId="K9G202" geneId="PDIG_67370"/>
        <gene id="6620" protId="K9FUI7" geneId="PDIG_45270"/>
        <gene id="6622" protId="K9FVG1" geneId="PDIG_38040"/>
        <gene id="6624" protId="K9FYH3" geneId="PDIG_38010"/>
        <gene id="6628" protId="K9FDI0" geneId="PDIG_77980"/>
        <gene id="6630" protId="K9F975" geneId="PDIG_88090"/>
        <gene id="6634" protId="K9FFD6" geneId="PDIG_69450"/>
        <gene id="6636" protId="K9G9N7" geneId="PDIG_59180"/>
        <gene id="6638" protId="K9GIK3" geneId="PDIG_32270"/>
        <gene id="6640" protId="K9GEN1" geneId="PDIG_03010"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="P.digitatum" link="http://www.uniprot.org/taxonomy/1170229"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3575"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2082"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="2079"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="2044"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1980"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1896"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="14">
        <score id="inparalog" value="0.523"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="1863"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="1799"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="10">
      <score id="bit" value="1669"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1361"/>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="1329"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="25">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="13">
      <score id="bit" value="1270"/>
      <geneRef id="26">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="27">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="1261"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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