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  <notes>
    <stats ortholog_groups="2564" inparalogs="7105"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Loxodonta africana " NCBITaxId="9785">
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    <notes>
      <additionalInformation abbreviation="L.africana" link="http://www.uniprot.org/taxonomy/9785"/>
    </notes>
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        <gene id="6790" protId="Q4WJZ5" geneId="AFUA_1G04280"/>
        <gene id="6792" protId="Q4WK74" geneId="AFUA_1G03460"/>
        <gene id="6794" protId="Q4WHG6" geneId="AFUA_2G05480"/>
        <gene id="6798" protId="Q4WZF1" geneId="mvp1"/>
        <gene id="6800" protId="A4D9I3" geneId="AFUA_5G08965"/>
        <gene id="6802" protId="Q4WQB1" geneId="AFUA_4G12200"/>
        <gene id="6804" protId="Q4WLQ6" geneId="AFUA_6G12680"/>
        <gene id="6806" protId="Q4WSV1" geneId="AFUA_1G11535"/>
        <gene id="6808" protId="Q4WLL4" geneId="AFUA_6G13110"/>
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        <gene id="6815" protId="Q4WCZ0" geneId="AFUA_6G02900"/>
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        <gene id="6829" protId="Q4WCH1" geneId="AFUA_8G04440"/>
        <gene id="6831" protId="E9QXL9" geneId="AFUA_1G11800"/>
        <gene id="6833" protId="Q4WKM9" geneId="AFUA_1G01910"/>
        <gene id="6835" protId="A4D9H9" geneId="AFUA_5G11985"/>
        <gene id="6837" protId="Q4WK68" geneId="AFUA_1G03520"/>
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        <gene id="6841" protId="Q4WXB1" geneId="AFUA_3G08860"/>
        <gene id="6843" protId="Q4WUW6" geneId="AFUA_5G09920"/>
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        <gene id="6899" protId="Q4WMQ7" geneId="AFUA_6G09070"/>
        <gene id="6902" protId="A4D9P5" geneId="AFUA_6G08155"/>
        <gene id="6904" protId="Q4WTW2" geneId="AFUA_5G06310"/>
        <gene id="6906" protId="Q4X1Z9" geneId="AFUA_2G08190"/>
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        <gene id="6912" protId="Q4WL24" geneId="AFUA_1G00440"/>
        <gene id="6913" protId="Q4WBW5" geneId="AFUA_8G06560"/>
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        <gene id="6918" protId="Q4X164" geneId="AFUA_2G11060"/>
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        <gene id="6923" protId="Q4WD80" geneId="AFUA_6G03810"/>
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        <gene id="6929" protId="Q4WJM4" geneId="AFUA_1G05470"/>
        <gene id="6936" protId="Q4X0Z3" geneId="creA"/>
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        <gene id="6942" protId="Q4WPX9" geneId="AFUA_4G10840"/>
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        <gene id="6952" protId="Q4WAI3" geneId="AFUA_7G01410"/>
        <gene id="6954" protId="Q4WQF2" geneId="AFUA_4G12610"/>
        <gene id="6956" protId="E9QTH1" geneId="AFUA_1G12140"/>
        <gene id="6958" protId="Q4WV32" geneId="AFUA_5G10620"/>
        <gene id="6960" protId="Q4WV95" geneId="AFUA_5G11300"/>
        <gene id="6962" protId="Q4WGD6" geneId="AFUA_7G04670"/>
        <gene id="6964" protId="Q4WA10" geneId="AFUA_4G03050"/>
        <gene id="6966" protId="Q4WHH8" geneId="AFUA_2G05350"/>
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        <gene id="6976" protId="Q4WD04" geneId="AFUA_6G03040"/>
        <gene id="6977" protId="Q4WS70" geneId="AFUA_1G13800"/>
        <gene id="6978" protId="Q4WZ53" geneId="AFUA_3G15380"/>
        <gene id="6979" protId="Q4WQS4" geneId="AFUA_4G13830"/>
        <gene id="6980" protId="Q4WZI0" geneId="AFUA_2G16860"/>
        <gene id="6981" protId="Q4WWU7" geneId="AFUA_3G07120"/>
        <gene id="6982" protId="Q4X113" geneId="AFUA_2G11580"/>
        <gene id="6983" protId="Q4WGF9" geneId="AFUA_7G04900"/>
        <gene id="6984" protId="Q4WUV2" geneId="AFUA_5G09780"/>
        <gene id="6985" protId="Q4WLD8" geneId="AFUA_6G13880"/>
        <gene id="6986" protId="Q4WFK6" geneId="AFUA_3G01890"/>
        <gene id="6987" protId="Q4X1S8" geneId="AFUA_2G08910"/>
        <gene id="6988" protId="Q4WTY9" geneId="AFUA_5G06580"/>
        <gene id="6989" protId="Q4WZN5" geneId="AFUA_2G16320"/>
        <gene id="6990" protId="Q4WDX2" geneId="AFUA_5G00980"/>
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        <gene id="7003" protId="Q4WYX0" geneId="tfb5"/>
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        <gene id="7011" protId="Q4WSA2" geneId="AFUA_1G13480"/>
        <gene id="7013" protId="Q4WAQ5" geneId="AFUA_7G02130"/>
        <gene id="7018" protId="Q4WIL9" geneId="AFUA_2G01380"/>
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        <gene id="7024" protId="Q4WV86" geneId="AFUA_5G11200"/>
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        <gene id="7034" protId="Q4WU46" geneId="AFUA_5G07160"/>
        <gene id="7036" protId="A4DA67" geneId="AFUA_4G03580"/>
        <gene id="7037" protId="Q4WGQ1" geneId="AFUA_7G05820"/>
        <gene id="7039" protId="Q4WI30" geneId="AFUA_2G03280"/>
        <gene id="7041" protId="Q4WTB8" geneId="AFUA_1G09850"/>
        <gene id="7043" protId="Q4WAC7" geneId="AFUA_7G00830"/>
        <gene id="7045" protId="Q4WBA1" geneId="AFUA_8G01570"/>
        <gene id="7047" protId="Q4WSH7" geneId="AFUA_1G12730"/>
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        <gene id="7050" protId="Q4WA63" geneId="AFUA_7G00180"/>
        <gene id="7053" protId="Q4WTE8" geneId="AFUA_1G09550"/>
        <gene id="7055" protId="Q4WI95" geneId="AFUA_2G02630"/>
        <gene id="7056" protId="A4DA06" geneId="AFUA_5G02650"/>
        <gene id="7058" protId="A4D9F3" geneId="AFUA_3G07970"/>
        <gene id="7060" protId="Q4WTU0" geneId="AFUA_5G06080"/>
        <gene id="7063" protId="Q4WFV4" geneId="AFUA_3G00900"/>
        <gene id="7064" protId="Q4WI35" geneId="AFUA_2G03230"/>
        <gene id="7065" protId="Q4X0H4" geneId="AFUA_2G13460"/>
        <gene id="7066" protId="Q4WIT5" geneId="AFUA_2G00710"/>
        <gene id="7067" protId="Q4WPQ9" geneId="AFUA_4G10130"/>
        <gene id="7070" protId="Q4WQC4" geneId="AFUA_4G12330"/>
        <gene id="7071" protId="Q4WFR7" geneId="AFUA_3G01270"/>
        <gene id="7075" protId="Q4WT13" geneId="AFUA_1G10920"/>
        <gene id="7078" protId="Q4WGQ5" geneId="AFUA_7G05860"/>
        <gene id="7080" protId="Q4WAP4" geneId="AFUA_7G02030"/>
        <gene id="7082" protId="Q4X101" geneId="AFUA_2G11700"/>
        <gene id="7086" protId="Q4WWF4" geneId="AFUA_3G05640"/>
        <gene id="7088" protId="Q4WUB7" geneId="AFUA_5G07890"/>
        <gene id="7100" protId="Q4WPF5" geneId="AFUA_4G09080"/>
        <gene id="7102" protId="A4D9B3" geneId="AFUA_2G13610"/>
        <gene id="7103" protId="Q4WD72" geneId="AFUA_6G03730"/>
        <gene id="7105" protId="A4D9N8" geneId="AFUA_4G05855"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="N.fumigata" link="http://www.uniprot.org/taxonomy/330879"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="4395"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3602"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2112"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="2107"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
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