<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2573" inparalogs="6962"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Loxodonta africana " NCBITaxId="9785">
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    <notes>
      <additionalInformation abbreviation="L.africana" link="http://www.uniprot.org/taxonomy/9785"/>
    </notes>
  </species>
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        <gene id="6805" protId="C1E1Y7" geneId="MICPUN_107931"/>
        <gene id="6807" protId="C1DZS5" geneId="MICPUN_78444"/>
        <gene id="6809" protId="C1EEP5" geneId="MICPUN_109197"/>
        <gene id="6811" protId="C1EB86" geneId="MICPUN_60342"/>
        <gene id="6855" protId="C1E232" geneId="MICPUN_93725"/>
        <gene id="6861" protId="C1FH64" geneId="MICPUN_85553"/>
        <gene id="6863" protId="C1E6P4" geneId="MICPUN_50333"/>
        <gene id="6865" protId="C1FGB4" geneId="GST"/>
        <gene id="6867" protId="C1FFA2" geneId="MICPUN_101718"/>
        <gene id="6869" protId="C1FG32" geneId="MICPUN_60719"/>
        <gene id="6871" protId="C1ECE2" geneId="MICPUN_108907"/>
        <gene id="6873" protId="C1EJ16" geneId="MICPUN_106613"/>
        <gene id="6882" protId="C1E8U4" geneId="MICPUN_59495"/>
        <gene id="6885" protId="C1DYE9" geneId="AMY3"/>
        <gene id="6886" protId="C1EGI4" geneId="AMY1"/>
        <gene id="6887" protId="C1ECL9" geneId="AMY5"/>
        <gene id="6888" protId="C1E7K8" geneId="AMY4"/>
        <gene id="6889" protId="C1DY04" geneId="AMY2"/>
        <gene id="6894" protId="C1EIZ3" geneId="MICPUN_76850"/>
        <gene id="6896" protId="C1EI01" geneId="MICPUN_64407"/>
        <gene id="6899" protId="C1FH52" geneId="MICPUN_74694"/>
        <gene id="6900" protId="C1EDQ7" geneId="MICPUN_86685"/>
        <gene id="6901" protId="C1EFC6" geneId="MICPUN_77142"/>
        <gene id="6904" protId="C1EA94" geneId="MICPUN_50956"/>
        <gene id="6905" protId="C1E4K7" geneId="MICPUN_108141"/>
        <gene id="6908" protId="C1E4I4" geneId="MICPUN_58050"/>
        <gene id="6910" protId="C1DZQ7" geneId="MICPUN_56454"/>
        <gene id="6912" protId="C1E3C0" geneId="MICPUN_57628"/>
        <gene id="6914" protId="C1EAP1" geneId="MICPUN_60143"/>
        <gene id="6916" protId="C1FDH4" geneId="ELF7R"/>
        <gene id="6918" protId="C1FGL2" geneId="MICPUN_60918"/>
        <gene id="6922" protId="C1EAZ6" geneId="MICPUN_60251"/>
        <gene id="6924" protId="C1E404" geneId="MICPUN_100055"/>
        <gene id="6926" protId="C1EGR1" geneId="SELW"/>
        <gene id="6928" protId="C1EFF4" geneId="MICPUN_63768"/>
        <gene id="6930" protId="C1EH32" geneId="PRDX"/>
        <gene id="6933" protId="C1EI04" geneId="MICPUN_109551"/>
        <gene id="6935" protId="C1EEQ4" geneId="MICPUN_109199"/>
        <gene id="6936" protId="C1FFA8" geneId="MICPUN_60450"/>
        <gene id="6938" protId="C1ECH1" geneId="MICPUN_61416"/>
        <gene id="6945" protId="C1EI61" geneId="MICPUN_104347"/>
        <gene id="6947" protId="C1E0G0" geneId="MICPUN_56200"/>
        <gene id="6950" protId="C1E1N3" geneId="MICPUN_99453"/>
        <gene id="6952" protId="C1E383" geneId="MICPUN_57589"/>
        <gene id="6954" protId="C1FG13" geneId="MICPUN_101887"/>
        <gene id="6956" protId="C1E263" geneId="MICPUN_80305"/>
        <gene id="6958" protId="C1FFQ8" geneId="MICPUN_83947"/>
        <gene id="6960" protId="C1FEJ0" geneId="MICPUN_55459"/>
        <gene id="6962" protId="C1E8G8" geneId="MICPUN_71737"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="Micromonas.sp." link="http://www.uniprot.org/taxonomy/296587"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="4054"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="3717"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="0.246"/>
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      <geneRef id="7">
        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.504"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.121"/>
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      <geneRef id="13">
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      <score id="bit" value="3433"/>
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        <score id="inparalog" value="0.25"/>
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        <score id="bootstrap" value="1"/>
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