<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1844" inparalogs="4628"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Komagataella pastoris " NCBITaxId="644223">
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    </database>
    <notes>
      <additionalInformation abbreviation="K.pastoris" link="http://www.uniprot.org/taxonomy/644223"/>
    </notes>
  </species>
  <species name="Meleagris gallopavo " NCBITaxId="9103">
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        <gene id="4605" protId="G3US02" geneId="SYNCRIP"/>
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        <gene id="4609" protId="G1ND10" geneId="LOC100548541"/>
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        <gene id="4615" protId="G1NNY1" geneId="LOC100550172"/>
        <gene id="4617" protId="G1NC39" geneId="uncharacterized_G1NC39"/>
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        <gene id="4621" protId="G1N7Q8" geneId="uncharacterized_G1N7Q8"/>
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      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="M.gallopavo" link="http://www.uniprot.org/taxonomy/9103"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="3177"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="2328"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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