<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="1637" inparalogs="5237"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Hordeum vulgare var. distichum " NCBITaxId="112509">
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        <gene id="5220" protId="F2DGD6" geneId="uncharacterized_F2DGD6"/>
        <gene id="5222" protId="M0XS86" geneId="uncharacterized_M0XS86"/>
        <gene id="5224" protId="M0YIU1" geneId="uncharacterized_M0YIU1"/>
        <gene id="5226" protId="M0YJR6" geneId="uncharacterized_M0YJR6"/>
        <gene id="5228" protId="F2DE93" geneId="uncharacterized_F2DE93"/>
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        <gene id="5231" protId="M0YA23" geneId="uncharacterized_M0YA23"/>
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        <gene id="5236" protId="M0ZCK3" geneId="uncharacterized_M0ZCK3"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="H.vulgare" link="http://www.uniprot.org/taxonomy/112509"/>
    </notes>
  </species>
  <species name="Torulaspora delbrueckii " NCBITaxId="1076872">
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        <gene id="4929" protId="G8ZYT2" geneId="TDEL0G01900"/>
        <gene id="4930" protId="G8ZVX9" geneId="TDEL0E05300"/>
        <gene id="4932" protId="G8ZXJ0" geneId="TDEL0F05230"/>
        <gene id="4934" protId="G8ZZK4" geneId="TDEL0H01890"/>
        <gene id="4936" protId="G8ZVY8" geneId="TDEL0E05390"/>
        <gene id="4938" protId="G8ZYE7" geneId="TDEL0G00550"/>
        <gene id="4955" protId="G8ZTH5" geneId="TDEL0D03350"/>
        <gene id="4958" protId="G8ZTA2" geneId="TDEL0D02620"/>
        <gene id="4960" protId="G8ZN16" geneId="TDEL0A06780"/>
        <gene id="4962" protId="G8ZRE3" geneId="TDEL0C01960"/>
        <gene id="4964" protId="G8ZQH4" geneId="TDEL0B07390"/>
        <gene id="4966" protId="G8ZWG8" geneId="TDEL0F01510"/>
        <gene id="4968" protId="G8ZS26" geneId="TDEL0C04290"/>
        <gene id="4971" protId="G8ZYE3" geneId="TDEL0G00510"/>
        <gene id="4972" protId="G8ZYE4" geneId="TDEL0G00520"/>
        <gene id="4975" protId="G8ZZQ5" geneId="TDEL0H02400"/>
        <gene id="4978" protId="G8ZPL1" geneId="TDEL0B04260"/>
        <gene id="4980" protId="G8ZM60" geneId="TDEL0A03720"/>
        <gene id="4982" protId="G8ZQK9" geneId="TDEL0C06070"/>
        <gene id="4984" protId="G8ZT54" geneId="TDEL0D02140"/>
        <gene id="4986" protId="G8ZV05" geneId="TDEL0E02060"/>
        <gene id="4994" protId="G8ZSL4" geneId="TDEL0D00240"/>
        <gene id="4995" protId="G8ZYG6" geneId="TDEL0G00740"/>
        <gene id="4996" protId="G8ZT74" geneId="TDEL0D02340"/>
        <gene id="4997" protId="G8ZXN0" geneId="TDEL0F05630"/>
        <gene id="4998" protId="G8ZNF2" geneId="TDEL0B00170"/>
        <gene id="4999" protId="G8ZYA1" geneId="TDEL0G05010"/>
        <gene id="5000" protId="G8ZXN2" geneId="TDEL0F05650"/>
        <gene id="5001" protId="G8ZUE9" geneId="TDEL0D06590"/>
        <gene id="5002" protId="G8ZVJ9" geneId="TDEL0E04000"/>
        <gene id="5003" protId="G8ZQV8" geneId="TDEL0C00110"/>
        <gene id="5007" protId="G8ZZ86" geneId="TDEL0H00710"/>
        <gene id="5008" protId="G8ZWY7" geneId="TDEL0F03200"/>
        <gene id="5011" protId="G9A007" geneId="TDEL0H03420"/>
        <gene id="5013" protId="G8ZQB5" geneId="TDEL0B06800"/>
        <gene id="5015" protId="G8ZR62" geneId="TDEL0C01150"/>
        <gene id="5017" protId="G8ZYV6" geneId="TDEL0G02140"/>
        <gene id="5020" protId="G8ZS81" geneId="TDEL0C04840"/>
        <gene id="5023" protId="G9A057" geneId="TDEL0H03920"/>
        <gene id="5025" protId="G8ZUL7" geneId="TDEL0E00680"/>
        <gene id="5027" protId="G8ZPN9" geneId="TDEL0B04540"/>
        <gene id="5029" protId="G8ZNE7" geneId="TDEL0B00120"/>
        <gene id="5031" protId="G8ZMD4" geneId="TDEL0A04460"/>
        <gene id="5033" protId="G8ZRI5" geneId="TDEL0C02380"/>
        <gene id="5037" protId="G8ZND1" geneId="TDEL0A07930"/>
        <gene id="5039" protId="G8ZZ62" geneId="TDEL0H00470"/>
        <gene id="5041" protId="G8ZVI5" geneId="TDEL0E03860"/>
        <gene id="5044" protId="G8ZM65" geneId="TDEL0A03770"/>
        <gene id="5046" protId="G8ZYL2" geneId="TDEL0G01200"/>
        <gene id="5048" protId="G8ZUR7" geneId="TDEL0E01180"/>
        <gene id="5050" protId="G8ZQD5" geneId="TDEL0B07000"/>
        <gene id="5052" protId="G8ZXI9" geneId="TDEL0F05220"/>
        <gene id="5066" protId="G8ZTI6" geneId="TDEL0D03460"/>
        <gene id="5073" protId="G8ZP66" geneId="TDEL0B02810"/>
        <gene id="5075" protId="G8ZQ62" geneId="TDEL0B06270"/>
        <gene id="5076" protId="G8ZVW1" geneId="TDEL0E05120"/>
        <gene id="5079" protId="G8ZSN9" geneId="TDEL0D00490"/>
        <gene id="5082" protId="G8ZS96" geneId="TDEL0C04990"/>
        <gene id="5084" protId="G8ZUW3" geneId="TDEL0E01640"/>
        <gene id="5086" protId="G8ZVM1" geneId="TDEL0E04220"/>
        <gene id="5088" protId="G8ZU26" geneId="TDEL0D05360"/>
        <gene id="5093" protId="G8ZWK7" geneId="TDEL0F01900"/>
        <gene id="5095" protId="G8ZW37" geneId="TDEL0F00200"/>
        <gene id="5096" protId="G8ZXM8" geneId="TDEL0F05610"/>
        <gene id="5098" protId="G8ZSE5" geneId="TDEL0C05480"/>
        <gene id="5100" protId="G8ZVX4" geneId="TDEL0E05250"/>
        <gene id="5102" protId="G8ZWB2" geneId="TDEL0F00950"/>
        <gene id="5106" protId="G8ZLQ5" geneId="TDEL0A02170"/>
        <gene id="5110" protId="G8ZVI8" geneId="TDEL0E03890"/>
        <gene id="5113" protId="G8ZSX1" geneId="TDEL0D01310"/>
        <gene id="5115" protId="G8ZZH2" geneId="TDEL0H01570"/>
        <gene id="5117" protId="G8ZSH5" geneId="TDEL0C05780"/>
        <gene id="5119" protId="G9A093" geneId="TDEL0H04280"/>
        <gene id="5121" protId="G8ZT27" geneId="TDEL0D01870"/>
        <gene id="5123" protId="G8ZQZ5" geneId="TDEL0C00480"/>
        <gene id="5125" protId="G8ZRE8" geneId="TDEL0C02010"/>
        <gene id="5128" protId="G8ZYA5" geneId="TDEL0G00130"/>
        <gene id="5130" protId="G8ZMZ7" geneId="TDEL0A06590"/>
        <gene id="5135" protId="G8ZM10" geneId="TDEL0A03220"/>
        <gene id="5139" protId="G8ZTU4" geneId="TDEL0D04540"/>
        <gene id="5142" protId="G8ZZJ6" geneId="TDEL0H01810"/>
        <gene id="5145" protId="G8ZVU2" geneId="TDEL0E04930"/>
        <gene id="5147" protId="G8ZUX5" geneId="TDEL0E01760"/>
        <gene id="5149" protId="G8ZNA7" geneId="TDEL0A07690"/>
        <gene id="5151" protId="G8ZNC1" geneId="TDEL0A07830"/>
        <gene id="5154" protId="G8ZN76" geneId="TDEL0A07380"/>
        <gene id="5164" protId="G8ZM87" geneId="TDEL0A03990"/>
        <gene id="5166" protId="G8ZZK7" geneId="TDEL0H01920"/>
        <gene id="5168" protId="G8ZLW8" geneId="TDEL0A02800"/>
        <gene id="5170" protId="G8ZMQ9" geneId="TDEL0A05710"/>
        <gene id="5172" protId="G8ZW56" geneId="TDEL0F00390"/>
        <gene id="5174" protId="G8ZVP0" geneId="TDEL0E04410"/>
        <gene id="5176" protId="G8ZUX7" geneId="TDEL0E01780"/>
        <gene id="5185" protId="G8ZQP7" geneId="TDEL0C06450"/>
        <gene id="5188" protId="G8ZR86" geneId="TDEL0C01390"/>
        <gene id="5191" protId="G8ZVM3" geneId="TDEL0E04240"/>
        <gene id="5193" protId="G8ZYN2" geneId="TDEL0G01400"/>
        <gene id="5196" protId="G8ZPS5" geneId="TDEL0B04900"/>
        <gene id="5199" protId="G8ZSQ9" geneId="TDEL0D00690"/>
        <gene id="5202" protId="G8ZTX0" geneId="TDEL0D04800"/>
        <gene id="5204" protId="G8ZZM4" geneId="TDEL0H02090"/>
        <gene id="5206" protId="G8ZR98" geneId="TDEL0C01510"/>
        <gene id="5208" protId="G8ZQA9" geneId="TDEL0B06740"/>
        <gene id="5210" protId="G8ZVS8" geneId="TDEL0E04790"/>
        <gene id="5212" protId="G8ZQG7" geneId="TDEL0B07320"/>
        <gene id="5214" protId="G8ZQE0" geneId="TDEL0B07050"/>
        <gene id="5221" protId="G8ZRZ0" geneId="TDEL0C03930"/>
        <gene id="5223" protId="G8ZT87" geneId="TDEL0D02470"/>
        <gene id="5225" protId="G8ZM96" geneId="TDEL0A04080"/>
        <gene id="5227" protId="G8ZVE0" geneId="TDEL0E03410"/>
        <gene id="5230" protId="G8ZSB7" geneId="TDEL0C05200"/>
        <gene id="5232" protId="G8ZQH1" geneId="TDEL0B07360"/>
        <gene id="5234" protId="G8ZMS7" geneId="TDEL0A05890"/>
        <gene id="5237" protId="G8ZXT8" geneId="TDEL0G03380"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="T.delbrueckii" link="http://www.uniprot.org/taxonomy/1076872"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="2">
        <score id="inparalog" value="0.415"/>
      </geneRef>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="2042"/>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1692"/>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="7">
        <score id="inparalog" value="0.806"/>
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      <geneRef id="8">
        <score id="inparalog" value="0.173"/>
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      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1550"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="11">
        <score id="inparalog" value="0.826"/>
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      <geneRef id="12">
        <score id="inparalog" value="0.546"/>
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      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1452"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.312"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1433"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.16"/>
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        <score id="bootstrap" value="0.98"/>
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      <score id="bit" value="1221"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="25">
        <score id="inparalog" value="0.7"/>
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        <score id="inparalog" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="34">
        <score id="inparalog" value="0.335"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.628"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.797"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="920"/>
      <geneRef id="51">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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      <geneRef id="52">
        <score id="inparalog" value="0.738"/>
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      <geneRef id="53">
        <score id="inparalog" value="0.735"/>
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      <geneRef id="54">
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      <geneRef id="56">
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      <geneRef id="57">
        <score id="inparalog" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="75">
        <score id="inparalog" value="1"/>
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      <geneRef id="76">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="831"/>
      <geneRef id="77">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="78">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="79">
        <score id="inparalog" value="0.666"/>
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      <geneRef id="80">
        <score id="inparalog" value="0.545"/>
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      <geneRef id="81">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="30">
      <score id="bit" value="824"/>
      <geneRef id="82">
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      <geneRef id="83">
        <score id="inparalog" value="0.722"/>
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      <geneRef id="84">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="85">
        <score id="inparalog" value="0.171"/>
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