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    <notes>
      <additionalInformation abbreviation="G.intestinalis" link="http://www.uniprot.org/taxonomy/184922"/>
    </notes>
  </species>
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        <gene id="1940" protId="D3B141" geneId="PPL_02010"/>
        <gene id="1941" protId="D3B5B1" geneId="PPL_03624"/>
        <gene id="1942" protId="D3BTF1" geneId="PPL_11445"/>
        <gene id="1943" protId="D3B493" geneId="PPL_03215"/>
        <gene id="1944" protId="D3B3N2" geneId="PPL_03000"/>
        <gene id="1945" protId="D3B9A8" geneId="PPL_05052"/>
        <gene id="1946" protId="D3B4C0" geneId="PPL_03242"/>
        <gene id="1947" protId="D3B123" geneId="PPL_01991"/>
        <gene id="1948" protId="D3B4C1" geneId="PPL_03243"/>
        <gene id="1949" protId="D3B0K2" geneId="PPL_01819"/>
        <gene id="1950" protId="D3B8A6" geneId="PPL_04697"/>
        <gene id="1951" protId="D3B086" geneId="PPL_01702"/>
        <gene id="1952" protId="D3BKW2" geneId="PPL_09194"/>
        <gene id="1953" protId="D3AW63" geneId="PPL_00335"/>
        <gene id="1954" protId="D3BT61" geneId="PPL_11353"/>
        <gene id="1955" protId="D3B011" geneId="PPL_01625"/>
        <gene id="1956" protId="D3B717" geneId="PPL_04248"/>
        <gene id="1959" protId="D3BMX1" geneId="PPL_12544"/>
        <gene id="1960" protId="D3BJ70" geneId="PPL_08595"/>
        <gene id="1961" protId="D3BTA0" geneId="PPL_11393"/>
        <gene id="1963" protId="D3BN28" geneId="PPL_12605"/>
        <gene id="1964" protId="D3BJB8" geneId="orcA"/>
        <gene id="1966" protId="D3B2F2" geneId="mvk"/>
        <gene id="1968" protId="D3BCT7" geneId="PPL_06315"/>
        <gene id="1970" protId="D3BE21" geneId="pfdn4"/>
        <gene id="1972" protId="D3BU79" geneId="gloB1"/>
        <gene id="1974" protId="D3BM06" geneId="yipf1"/>
        <gene id="1978" protId="D3B556" geneId="PPL_03567"/>
        <gene id="1979" protId="D3BTW1" geneId="PPL_11221"/>
        <gene id="1980" protId="D3BE69" geneId="PPL_07022"/>
        <gene id="1981" protId="D3AZ97" geneId="PPL_01437"/>
        <gene id="1982" protId="D3BQH6" geneId="PPL_10161"/>
        <gene id="1983" protId="D3BH37" geneId="rngB"/>
        <gene id="1984" protId="D3AZ81" geneId="PPL_01421"/>
        <gene id="1990" protId="D3B5D3" geneId="PPL_03869"/>
        <gene id="1991" protId="D3BMT2" geneId="PPL_12505"/>
        <gene id="1993" protId="D3B7E8" geneId="zntD"/>
        <gene id="1994" protId="D3BJH1" geneId="zntC"/>
        <gene id="1996" protId="D3BCF6" geneId="PPL_06181"/>
        <gene id="1998" protId="D3BJI3" geneId="rpl29"/>
        <gene id="2000" protId="D3BPU5" geneId="yipf5"/>
        <gene id="2015" protId="D3BD20" geneId="sir2B"/>
        <gene id="2018" protId="D3BSX2" geneId="DD8-14"/>
        <gene id="2020" protId="D3AYA8" geneId="psmD12"/>
        <gene id="2022" protId="D3AZB6" geneId="rpl31"/>
        <gene id="2024" protId="D3BQ01" geneId="nutf2"/>
        <gene id="2027" protId="D3BAA5" geneId="pefB"/>
        <gene id="2029" protId="D3B1Q8" geneId="ranbp1"/>
        <gene id="2031" protId="D3BQC3" geneId="vps45"/>
        <gene id="2033" protId="D3BV00" geneId="PPL_11972"/>
        <gene id="2034" protId="D3BUZ8" geneId="PPL_11970"/>
        <gene id="2035" protId="D3BPN5" geneId="PPL_09960"/>
        <gene id="2036" protId="D3BLX0" geneId="PPL_12174"/>
        <gene id="2037" protId="D3BLL5" geneId="PPL_12068"/>
        <gene id="2038" protId="D3BV01" geneId="PPL_11973"/>
        <gene id="2039" protId="D3BLK2" geneId="PPL_12055"/>
        <gene id="2040" protId="D3BR21" geneId="PPL_10424"/>
        <gene id="2041" protId="D3BTB6" geneId="PPL_11409"/>
        <gene id="2042" protId="D3AZ80" geneId="PPL_01420"/>
        <gene id="2043" protId="D3BGN5" geneId="PPL_07687"/>
        <gene id="2044" protId="D3B2Z3" geneId="PPL_02758"/>
        <gene id="2045" protId="D3AX11" geneId="PPL_00639"/>
        <gene id="2046" protId="D3BCT1" geneId="PPL_06309"/>
        <gene id="2047" protId="D3BSU7" geneId="PPL_11067"/>
        <gene id="2048" protId="D3BBJ6" geneId="PPL_05864"/>
        <gene id="2050" protId="D3AW08" geneId="PPL_00275"/>
        <gene id="2051" protId="D3B435" geneId="PPL_03156"/>
        <gene id="2052" protId="D3BGN9" geneId="PPL_07691"/>
        <gene id="2055" protId="D3BE40" geneId="gna1"/>
        <gene id="2057" protId="D3AYJ3" geneId="PPL_01253"/>
        <gene id="2059" protId="D3B343" geneId="PPL_02808"/>
        <gene id="2061" protId="D3B5L1" geneId="PPL_03949"/>
        <gene id="2063" protId="D3BM22" geneId="PPL_12230"/>
        <gene id="2065" protId="D3BKI5" geneId="PPL_09066"/>
        <gene id="2067" protId="D3BKE7" geneId="vps25"/>
        <gene id="2070" protId="D3BL98" geneId="mfsd1"/>
        <gene id="2072" protId="D3B044" geneId="lsm2"/>
        <gene id="2074" protId="D3AYL6" geneId="hprT"/>
        <gene id="2076" protId="D3BGK0" geneId="gloB2"/>
        <gene id="2078" protId="D3BJX9" geneId="sf3b4"/>
        <gene id="2080" protId="D3BUG2" geneId="rpl34"/>
        <gene id="2082" protId="D3B2Q2" geneId="rdiA"/>
        <gene id="2084" protId="D3BD80" geneId="rps12"/>
        <gene id="2086" protId="D3BTN8" geneId="PPL_11148"/>
        <gene id="2088" protId="D3B053" geneId="PPL_01668"/>
        <gene id="2089" protId="D3B2T3" geneId="eIF4e"/>
        <gene id="2090" protId="D3B478" geneId="PPL_03199"/>
        <gene id="2093" protId="D3BT72" geneId="PPL_11365"/>
        <gene id="2094" protId="D3B0G3" geneId="PPL_01780"/>
        <gene id="2096" protId="D3BAX8" geneId="PPL_05709"/>
        <gene id="2097" protId="D3BDR5" geneId="vamp7B"/>
        <gene id="2099" protId="D3BEE9" geneId="pfdn6"/>
        <gene id="2101" protId="D3BUE2" geneId="lsm3"/>
        <gene id="2103" protId="D3BUI8" geneId="eIF1"/>
        <gene id="2105" protId="D3BC53" geneId="PPL_06075"/>
        <gene id="2106" protId="D3B8E8" geneId="PPL_04741"/>
        <gene id="2107" protId="D3B8H6" geneId="PPL_04769"/>
        <gene id="2108" protId="D3B8F0" geneId="PPL_04743"/>
        <gene id="2109" protId="D3B5U5" geneId="PPL_04033"/>
        <gene id="2110" protId="D3B8F7" geneId="PPL_04750"/>
        <gene id="2111" protId="D3B8H8" geneId="PPL_04771"/>
        <gene id="2114" protId="D3B7G4" geneId="PPL_04402"/>
        <gene id="2115" protId="D3B7G7" geneId="PPL_04405"/>
        <gene id="2116" protId="D3B7G5" geneId="PPL_04403"/>
        <gene id="2117" protId="D3B7G6" geneId="PPL_04404"/>
        <gene id="2119" protId="D3BKL0" geneId="PPL_09092"/>
        <gene id="2121" protId="D3BSZ3" geneId="syn7A"/>
        <gene id="2122" protId="D3BFK9" geneId="PPL_06743"/>
        <gene id="2123" protId="D3BCF0" geneId="syn7B"/>
        <gene id="2126" protId="D3AW43" geneId="ctns"/>
        <gene id="2128" protId="D3B9G4" geneId="PPL_05108"/>
        <gene id="2129" protId="D3B1Z1" geneId="PPL_02316"/>
        <gene id="2131" protId="D3B0K1" geneId="polD2"/>
        <gene id="2133" protId="D3BGK9" geneId="PPL_07661"/>
        <gene id="2135" protId="D3B2U1" geneId="iunH"/>
        <gene id="2137" protId="D3BIR5" geneId="PPL_08150"/>
        <gene id="2139" protId="D3BTL0" geneId="rpb8"/>
        <gene id="2143" protId="D3BLH8" geneId="PPL_12355"/>
        <gene id="2144" protId="D3BJS4" geneId="PPL_08804"/>
        <gene id="2145" protId="D3B9B2" geneId="PPL_05056"/>
        <gene id="2146" protId="D3BSJ6" geneId="PPL_10965"/>
        <gene id="2147" protId="D3B5H3" geneId="PPL_03911"/>
        <gene id="2148" protId="D3BBR5" geneId="PPL_05934"/>
        <gene id="2149" protId="D3BV08" geneId="PPL_11980"/>
        <gene id="2150" protId="D3BD04" geneId="PPL_06382"/>
        <gene id="2151" protId="D3B0A7" geneId="PPL_01723"/>
        <gene id="2152" protId="D3BMA6" geneId="PPL_12316"/>
        <gene id="2153" protId="D3BTB7" geneId="PPL_11410"/>
        <gene id="2154" protId="D3BP22" geneId="PPL_09785"/>
        <gene id="2155" protId="D3B104" geneId="PPL_01972"/>
        <gene id="2156" protId="D3BAP6" geneId="PPL_05625"/>
        <gene id="2157" protId="D3BGJ4" geneId="PPL_07646"/>
        <gene id="2158" protId="D3BTK1" geneId="PPL_11497"/>
        <gene id="2159" protId="D3BJ24" geneId="PPL_08543"/>
        <gene id="2160" protId="D3B2X8" geneId="PPL_02742"/>
        <gene id="2161" protId="D3B2X7" geneId="PPL_02741"/>
        <gene id="2162" protId="D3BPY1" geneId="PPL_10025"/>
        <gene id="2163" protId="D3B931" geneId="PPL_04975"/>
        <gene id="2164" protId="D3BTB8" geneId="PPL_11411"/>
        <gene id="2165" protId="D3AXN7" geneId="PPL_00944"/>
        <gene id="2166" protId="D3BG06" geneId="PPL_07457"/>
        <gene id="2167" protId="D3BLG6" geneId="PPL_09400"/>
        <gene id="2168" protId="D3AVJ7" geneId="PPL_00110"/>
        <gene id="2169" protId="D3B2H4" geneId="PPL_02587"/>
        <gene id="2170" protId="D3BG25" geneId="PPL_07476"/>
        <gene id="2171" protId="D3BAS7" geneId="PPL_05658"/>
        <gene id="2172" protId="D3B2Y4" geneId="PPL_02749"/>
        <gene id="2173" protId="D3B2Y7" geneId="PPL_02752"/>
        <gene id="2174" protId="D3B9S4" geneId="PPL_05220"/>
        <gene id="2175" protId="D3BLF7" geneId="PPL_09391"/>
        <gene id="2176" protId="D3BTD6" geneId="PPL_11430"/>
        <gene id="2177" protId="D3B138" geneId="PPL_02006"/>
        <gene id="2178" protId="D3BPY0" geneId="PPL_10024"/>
        <gene id="2179" protId="D3B3D3" geneId="PPL_02899"/>
        <gene id="2180" protId="D3B2Z1" geneId="PPL_02756"/>
        <gene id="2181" protId="D3BT64" geneId="PPL_11356"/>
        <gene id="2182" protId="D3BGX7" geneId="PPL_07779"/>
        <gene id="2183" protId="D3BGJ6" geneId="PPL_07648"/>
        <gene id="2184" protId="D3BSV1" geneId="PPL_11071"/>
        <gene id="2185" protId="D3BTG4" geneId="PPL_11458"/>
        <gene id="2186" protId="D3BUB2" geneId="PPL_11731"/>
        <gene id="2187" protId="D3AZ40" geneId="PPL_01380"/>
        <gene id="2188" protId="D3BSV4" geneId="PPL_11074"/>
        <gene id="2189" protId="D3BR05" geneId="PPL_10408"/>
        <gene id="2190" protId="D3BTE3" geneId="PPL_11437"/>
        <gene id="2191" protId="D3BEM2" geneId="PPL_07186"/>
        <gene id="2192" protId="D3BB74" geneId="PPL_05260"/>
        <gene id="2193" protId="D3B071" geneId="efaAI"/>
        <gene id="2194" protId="D3BG11" geneId="PPL_07462"/>
        <gene id="2195" protId="D3B0Q4" geneId="PPL_01871"/>
        <gene id="2196" protId="D3BGM8" geneId="PPL_07680"/>
        <gene id="2197" protId="D3BTA6" geneId="PPL_11399"/>
        <gene id="2198" protId="D3BA07" geneId="PPL_05379"/>
        <gene id="2199" protId="D3BS05" geneId="PPL_10795"/>
        <gene id="2200" protId="D3B2I5" geneId="PPL_02598"/>
        <gene id="2201" protId="D3BSY2" geneId="PPL_11102"/>
        <gene id="2202" protId="D3BSF0" geneId="PPL_10917"/>
        <gene id="2203" protId="D3BGA7" geneId="PPL_07558"/>
        <gene id="2204" protId="D3BA19" geneId="PPL_05391"/>
        <gene id="2205" protId="D3BA17" geneId="PPL_05389"/>
        <gene id="2206" protId="D3BSV3" geneId="PPL_11073"/>
        <gene id="2207" protId="D3B2L1" geneId="PPL_02625"/>
        <gene id="2208" protId="D3BA23" geneId="PPL_05395"/>
        <gene id="2209" protId="D3BSY7" geneId="PPL_11108"/>
        <gene id="2210" protId="D3BGP7" geneId="PPL_07699"/>
        <gene id="2211" protId="D3AZT8" geneId="PPL_01551"/>
        <gene id="2212" protId="D3BD57" geneId="PPL_06437"/>
        <gene id="2213" protId="D3BI62" geneId="PPL_08430"/>
        <gene id="2214" protId="D3AZR6" geneId="PPL_01529"/>
        <gene id="2215" protId="D3AX56" geneId="PPL_00685"/>
        <gene id="2216" protId="D3B303" geneId="PPL_02768"/>
        <gene id="2217" protId="D3BS47" geneId="PPL_10839"/>
        <gene id="2218" protId="D3BEX7" geneId="PPL_07293"/>
        <gene id="2219" protId="D3BB50" geneId="PPL_05782"/>
        <gene id="2220" protId="D3B0K4" geneId="PPL_01821"/>
        <gene id="2221" protId="D3B085" geneId="PPL_01701"/>
        <gene id="2222" protId="D3AW32" geneId="PPL_00299"/>
        <gene id="2223" protId="D3BSS3" geneId="PPL_11043"/>
        <gene id="2224" protId="D3BP23" geneId="PPL_09786"/>
        <gene id="2225" protId="D3B049" geneId="PPL_01663"/>
        <gene id="2228" protId="D3B288" geneId="PPL_02496"/>
        <gene id="2230" protId="D3AVN0" geneId="PPL_00145"/>
        <gene id="2234" protId="D3BAT7" geneId="trxC"/>
        <gene id="2235" protId="D3B6I2" geneId="trxE"/>
        <gene id="2236" protId="D3AYP2" geneId="trxD"/>
        <gene id="2238" protId="D3BFU7" geneId="empC"/>
        <gene id="2239" protId="D3AWD8" geneId="empD"/>
        <gene id="2240" protId="D3B7N4" geneId="empA"/>
        <gene id="2241" protId="D3BM15" geneId="empB"/>
        <gene id="2243" protId="D3B8S3" geneId="phlp1"/>
        <gene id="2244" protId="D3BUZ0" geneId="phlp2"/>
        <gene id="2246" protId="D3B151" geneId="vps22"/>
        <gene id="2248" protId="D3AY40" geneId="PPL_01099"/>
        <gene id="2250" protId="D3BFL2" geneId="spc3"/>
        <gene id="2252" protId="D3AY14" geneId="snrpF"/>
        <gene id="2272" protId="D3BF67" geneId="acbd6"/>
        <gene id="2274" protId="D3BE14" geneId="PPL_06967"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.pallidum" link="http://www.uniprot.org/taxonomy/13642"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="1310"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1005"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="973"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="932"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="917"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="906"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="900"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="17">
        <score id="inparalog" value="0.142"/>
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    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="832"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="20">
        <score id="inparalog" value="0.588"/>
      </geneRef>
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    <orthologGroup id="10">
      <score id="bit" value="828"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="779"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="771"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="26">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="13">
      <score id="bit" value="752"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="29">
        <score id="inparalog" value="0.195"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="14">
      <score id="bit" value="752"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="31">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="15">
      <score id="bit" value="749"/>
      <geneRef id="32">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="33">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="16">
      <score id="bit" value="717"/>
      <geneRef id="34">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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