<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2513" inparalogs="6680"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Gasterosteus aculeatus " NCBITaxId="69293">
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        <gene id="1338" protId="G3Q8C0" geneId="uncharacterized_G3Q8C0"/>
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        <gene id="1402" protId="G3PU54" geneId="uncharacterized_G3PU54"/>
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        <gene id="1426" protId="G3P520" geneId="uncharacterized_G3P520"/>
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        <gene id="1428" protId="G3P898" geneId="uncharacterized_G3P898"/>
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        <gene id="1448" protId="G3Q078" geneId="MOGS"/>
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        <gene id="1452" protId="G3PSN7" geneId="KYNU"/>
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        <gene id="1456" protId="G3P9S3" geneId="TSR1"/>
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        <gene id="1463" protId="G3P7P0" geneId="NOL6"/>
        <gene id="1465" protId="G3NVN1" geneId="GMPPA"/>
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        <gene id="1945" protId="G3PDQ2" geneId="FDPS"/>
        <gene id="1947" protId="G3NMV5" geneId="GAD1 (2 of 2)"/>
        <gene id="1948" protId="G3PPM7" geneId="uncharacterized_G3PPM7"/>
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        <gene id="1950" protId="G3P4S6" geneId="CSAD"/>
        <gene id="1952" protId="G3Q206" geneId="uncharacterized_G3Q206"/>
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        <gene id="1954" protId="G3QCD1" geneId="uncharacterized_G3QCD1"/>
        <gene id="1955" protId="G3PCV3" geneId="CLK3"/>
        <gene id="1957" protId="G3NJT1" geneId="DPM1"/>
        <gene id="1959" protId="G3NW68" geneId="PARS2"/>
        <gene id="1961" protId="G3NPB3" geneId="DUS1L"/>
        <gene id="1963" protId="G3Q7G8" geneId="EARS2"/>
        <gene id="1965" protId="G3P9Q3" geneId="NUBPL (1 of 2)"/>
        <gene id="1967" protId="G3PZ73" geneId="USP14"/>
        <gene id="1969" protId="G3NEK4" geneId="RPS5"/>
        <gene id="1971" protId="G3P3H8" geneId="MLST8"/>
        <gene id="1973" protId="G3Q0Y4" geneId="SSRP1"/>
        <gene id="1975" protId="G3P1A5" geneId="KIFC2"/>
        <gene id="1976" protId="G3Q042" geneId="KIFC3"/>
        <gene id="1978" protId="G3QAG7" geneId="RRAGB"/>
        <gene id="1980" protId="G3PZ97" geneId="USO1"/>
        <gene id="1982" protId="G3P875" geneId="DYRK1A"/>
        <gene id="1983" protId="G3NJK0" geneId="DYRK1B"/>
        <gene id="1985" protId="G3N7W0" geneId="CAPZB"/>
        <gene id="1987" protId="G3NW52" geneId="PSMA4 (1 of 2)"/>
        <gene id="1989" protId="G3NXY3" geneId="XPNPEP3"/>
        <gene id="1991" protId="G3NYT4" geneId="SF3A3"/>
        <gene id="1993" protId="G3NCY9" geneId="DEGS1"/>
        <gene id="1994" protId="G3P191" geneId="DEGS2"/>
        <gene id="1996" protId="G3N635" geneId="XPOT"/>
        <gene id="1998" protId="G3P4P4" geneId="SLC24A6"/>
        <gene id="2000" protId="G3NUI6" geneId="C12orf10"/>
        <gene id="2002" protId="G3PHK9" geneId="SCFD1"/>
        <gene id="2004" protId="G3PMB2" geneId="RFC5"/>
        <gene id="2006" protId="Q94SH5" geneId="COIII"/>
        <gene id="2008" protId="G3PSU1" geneId="RPL5 (3 of 3)"/>
        <gene id="2010" protId="G3PTY7" geneId="RPL7A"/>
        <gene id="2012" protId="G3NRR0" geneId="SGK2"/>
        <gene id="2013" protId="G3PAD3" geneId="SGK1"/>
        <gene id="2014" protId="G3NCN1" geneId="uncharacterized_G3NCN1"/>
        <gene id="2015" protId="G3Q889" geneId="AKT3 (2 of 2)"/>
        <gene id="2016" protId="G3Q9I2" geneId="AKT2 (2 of 2)"/>
        <gene id="2018" protId="G3NHF5" geneId="CYC1"/>
        <gene id="2020" protId="G3PSH5" geneId="SORD"/>
        <gene id="2022" protId="G3PQ11" geneId="DARS2"/>
        <gene id="2024" protId="G3NHU8" geneId="RAB6B (1 of 2)"/>
        <gene id="2025" protId="G3PYH9" geneId="uncharacterized_G3PYH9"/>
        <gene id="2026" protId="G3QAJ0" geneId="RAB6C"/>
        <gene id="2028" protId="G3N497" geneId="ASNS"/>
        <gene id="2030" protId="G3P7J4" geneId="FDFT1"/>
        <gene id="2032" protId="G3NMN1" geneId="KAT2B"/>
        <gene id="2033" protId="G3P1Q7" geneId="KAT2A"/>
        <gene id="2035" protId="G3NB61" geneId="CDC16"/>
        <gene id="2037" protId="G3N7T4" geneId="BYSL"/>
        <gene id="2039" protId="G3PCT5" geneId="LACE1"/>
        <gene id="2040" protId="G3P2E9" geneId="uncharacterized_G3P2E9"/>
        <gene id="2042" protId="G3NZG1" geneId="ESD"/>
        <gene id="2044" protId="G3P087" geneId="NUBP2"/>
        <gene id="2046" protId="G3QAV3" geneId="SLC9A6 (2 of 2)"/>
        <gene id="2047" protId="G3PKZ0" geneId="SLC9A7"/>
        <gene id="2049" protId="G3NV30" geneId="PIGT"/>
        <gene id="2051" protId="G3NMM4" geneId="CDK12"/>
        <gene id="2053" protId="G3NEZ5" geneId="KMO"/>
        <gene id="2055" protId="G3PRH6" geneId="CACTIN"/>
        <gene id="2057" protId="G3Q8K2" geneId="MARK2"/>
        <gene id="2058" protId="G3NZE2" geneId="MARK1 (2 of 2)"/>
        <gene id="2059" protId="G3NLP6" geneId="MARK3"/>
        <gene id="2060" protId="G3PG04" geneId="MARK4 (1 of 2)"/>
        <gene id="2062" protId="G3NVG1" geneId="PDIA3"/>
        <gene id="2063" protId="G3P7R6" geneId="uncharacterized_G3P7R6"/>
        <gene id="2065" protId="G3PP91" geneId="HIRA (5 of 5)"/>
        <gene id="2067" protId="G3PSK1" geneId="PIF1"/>
        <gene id="2069" protId="G3NUP3" geneId="EIF2C2"/>
        <gene id="2070" protId="G3NDW2" geneId="EIF2C4"/>
        <gene id="2071" protId="G3ND16" geneId="EIF2C3 (2 of 2)"/>
        <gene id="2072" protId="G3PFT0" geneId="EIF2C1"/>
        <gene id="2074" protId="G3Q2W4" geneId="PSMB7"/>
        <gene id="2075" protId="G3Q3S9" geneId="PSMB10"/>
        <gene id="2076" protId="G3N4H5" geneId="uncharacterized_G3N4H5"/>
        <gene id="2077" protId="G3N4G2" geneId="uncharacterized_G3N4G2"/>
        <gene id="2078" protId="G3N4H0" geneId="uncharacterized_G3N4H0"/>
        <gene id="2079" protId="G3N8R2" geneId="uncharacterized_G3N8R2"/>
        <gene id="2081" protId="G3NMW7" geneId="PSMA6 (2 of 2)"/>
        <gene id="2082" protId="G3NQQ6" geneId="uncharacterized_G3NQQ6"/>
        <gene id="2084" protId="G3N966" geneId="PHB2"/>
        <gene id="2086" protId="G3NLI5" geneId="CTNNBL1"/>
        <gene id="2088" protId="G3NS01" geneId="uncharacterized_G3NS01"/>
        <gene id="2090" protId="G3Q6A9" geneId="SLC7A7"/>
        <gene id="2091" protId="G3PMP1" geneId="SLC7A6"/>
        <gene id="2092" protId="G3PU74" geneId="uncharacterized_G3PU74"/>
        <gene id="2093" protId="G3NLR0" geneId="uncharacterized_G3NLR0"/>
        <gene id="2094" protId="G3NFU7" geneId="SLC7A5"/>
        <gene id="2095" protId="G3Q629" geneId="SLC7A8"/>
        <gene id="2096" protId="G3NUZ3" geneId="uncharacterized_G3NUZ3"/>
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        <gene id="2099" protId="G3PVC0" geneId="SLC7A9 (1 of 2)"/>
        <gene id="2100" protId="G3Q8W1" geneId="uncharacterized_G3Q8W1"/>
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        <gene id="2103" protId="G3P971" geneId="EIF2B4"/>
        <gene id="2105" protId="G3NJG1" geneId="CYP51A1"/>
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        <gene id="2110" protId="G3P4S8" geneId="RPS6KA1"/>
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        <gene id="2112" protId="G3Q3R1" geneId="RPS6KA6"/>
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        <gene id="2114" protId="G3QA73" geneId="RPS6KA4"/>
        <gene id="2115" protId="G3Q9Y7" geneId="RPS6KB1 (1 of 2)"/>
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        <gene id="2118" protId="G3NA68" geneId="KCNAB2"/>
        <gene id="2119" protId="G3QBV1" geneId="uncharacterized_G3QBV1"/>
        <gene id="2120" protId="G3N845" geneId="uncharacterized_G3N845"/>
        <gene id="2122" protId="G3P5C3" geneId="KDM1A"/>
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        <gene id="2132" protId="G3Q8B5" geneId="TAF5L"/>
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        <gene id="2150" protId="G3PR91" geneId="uncharacterized_G3PR91"/>
        <gene id="2152" protId="G3NQ93" geneId="uncharacterized_G3NQ93"/>
        <gene id="2153" protId="G3N8D5" geneId="uncharacterized_G3N8D5"/>
        <gene id="2154" protId="G3NHG5" geneId="uncharacterized_G3NHG5"/>
        <gene id="2155" protId="G3P6B8" geneId="uncharacterized_G3P6B8"/>
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        <gene id="2157" protId="G3P577" geneId="RHOB"/>
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        <gene id="2161" protId="G3PAE6" geneId="KIAA0100"/>
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        <gene id="2165" protId="G3NMJ1" geneId="HAO1"/>
        <gene id="2168" protId="G3NH23" geneId="uncharacterized_G3NH23"/>
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        <gene id="2172" protId="G3NW65" geneId="GPN2"/>
        <gene id="2174" protId="G3P0C3" geneId="NDUFS7"/>
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        <gene id="2178" protId="G3PN83" geneId="ELAC2"/>
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        <gene id="2183" protId="G3PZR3" geneId="uncharacterized_G3PZR3"/>
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        <gene id="2187" protId="G3PDI5" geneId="uncharacterized_G3PDI5"/>
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        <gene id="2192" protId="G3PA41" geneId="SLC28A2"/>
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        <gene id="2196" protId="G3NI71" geneId="OSBPL7 (2 of 2)"/>
        <gene id="2198" protId="G3NMJ0" geneId="MAP2K1"/>
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        <gene id="2205" protId="G3NFT8" geneId="KLHDC4"/>
        <gene id="2207" protId="G3P6A7" geneId="RAE1"/>
        <gene id="2209" protId="G3QC52" geneId="SC5DL (1 of 2)"/>
        <gene id="2211" protId="G3Q046" geneId="NOC4L"/>
        <gene id="2213" protId="G3PI88" geneId="uncharacterized_G3PI88"/>
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        <gene id="2217" protId="G3NTV7" geneId="uncharacterized_G3NTV7"/>
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        <gene id="2220" protId="G3P8Z0" geneId="U2AF2"/>
        <gene id="2221" protId="G3PNF0" geneId="uncharacterized_G3PNF0"/>
        <gene id="2223" protId="G3NPV3" geneId="PDCD6IP"/>
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        <gene id="2227" protId="G3PQ37" geneId="ALG1"/>
        <gene id="2229" protId="G3NKJ5" geneId="GCK"/>
        <gene id="2230" protId="G3QC88" geneId="uncharacterized_G3QC88"/>
        <gene id="2231" protId="G3PUC9" geneId="HKDC1"/>
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        <gene id="2244" protId="G3PKR7" geneId="uncharacterized_G3PKR7"/>
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        <gene id="2273" protId="G3Q5J2" geneId="uncharacterized_G3Q5J2"/>
        <gene id="2275" protId="G3NHZ7" geneId="GTF2H2"/>
        <gene id="2277" protId="G3Q0K3" geneId="EEF1G"/>
        <gene id="2279" protId="G3P9I2" geneId="uncharacterized_G3P9I2"/>
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        <gene id="2301" protId="G3PL40" geneId="NIT2"/>
        <gene id="2303" protId="G3NEB5" geneId="uncharacterized_G3NEB5"/>
        <gene id="2304" protId="G3NGG6" geneId="RBM39"/>
        <gene id="2306" protId="G3PMH5" geneId="PSMB5"/>
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        <gene id="2311" protId="G3PCT2" geneId="ZC3H15"/>
        <gene id="2313" protId="G3Q1L0" geneId="uncharacterized_G3Q1L0"/>
        <gene id="2314" protId="G3P6Z7" geneId="ATG9A"/>
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        <gene id="2320" protId="G3PUK5" geneId="PPM1G"/>
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        <gene id="2332" protId="G3Q3M5" geneId="FPGS"/>
        <gene id="2334" protId="G3NXS5" geneId="KIF21B"/>
        <gene id="2335" protId="G3P539" geneId="uncharacterized_G3P539"/>
        <gene id="2336" protId="G3Q5K3" geneId="uncharacterized_G3Q5K3"/>
        <gene id="2338" protId="G3PGF2" geneId="CALM2"/>
        <gene id="2339" protId="G3NDL7" geneId="uncharacterized_G3NDL7"/>
        <gene id="2340" protId="G3P4Z6" geneId="CALM3"/>
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        <gene id="2344" protId="G3PT97" geneId="USP10"/>
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        <gene id="2353" protId="G3NA48" geneId="AKR7A3"/>
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        <gene id="2359" protId="G3PVZ2" geneId="BRIX1"/>
        <gene id="2361" protId="G3NF91" geneId="uncharacterized_G3NF91"/>
        <gene id="2362" protId="G3PW55" geneId="RAD23B"/>
        <gene id="2363" protId="G3NQQ1" geneId="RAD23A (1 of 2)"/>
        <gene id="2365" protId="G3PKD3" geneId="uncharacterized_G3PKD3"/>
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        <gene id="2368" protId="G3NWN8" geneId="PELO"/>
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        <gene id="2404" protId="G3PE54" geneId="CAMKV (1 of 2)"/>
        <gene id="2406" protId="G3PPY2" geneId="uncharacterized_G3PPY2"/>
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        <gene id="2408" protId="G3NKC8" geneId="GPD1L"/>
        <gene id="2410" protId="G3Q763" geneId="NAP1L1"/>
        <gene id="2411" protId="G3PAQ1" geneId="NAP1L4"/>
        <gene id="2413" protId="G3PJ00" geneId="QRSL1"/>
        <gene id="2415" protId="G3Q5G9" geneId="SLC26A11"/>
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        <gene id="2418" protId="G3PBE0" geneId="RAB8A (1 of 2)"/>
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        <gene id="2420" protId="G3PDV4" geneId="RAB13"/>
        <gene id="2422" protId="G3QA09" geneId="CAMKK1 (1 of 2)"/>
        <gene id="2423" protId="G3PZX2" geneId="CAMKK2"/>
        <gene id="2425" protId="G3Q3Z0" geneId="CNOT7"/>
        <gene id="2426" protId="G3QCB5" geneId="CNOT8"/>
        <gene id="2428" protId="G3N9C4" geneId="GTF2H4"/>
        <gene id="2430" protId="G3P0K7" geneId="CPSF2"/>
        <gene id="2432" protId="G3NKN6" geneId="MEMO1"/>
        <gene id="2434" protId="G3PV00" geneId="uncharacterized_G3PV00"/>
        <gene id="2436" protId="G3Q3K0" geneId="THNSL2"/>
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        <gene id="3385" protId="G3NML4" geneId="RALA"/>
        <gene id="3386" protId="G3PDS2" geneId="uncharacterized_G3PDS2"/>
        <gene id="3388" protId="G3NW96" geneId="BCHE"/>
        <gene id="3389" protId="G3N6L5" geneId="ACHE"/>
        <gene id="3390" protId="G3Q258" geneId="CEL (1 of 2)"/>
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        <gene id="3400" protId="G3P2T5" geneId="WDR24"/>
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        <gene id="3408" protId="G3PTW1" geneId="TCF25"/>
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        <gene id="3886" protId="G3PGG8" geneId="NRDE2"/>
        <gene id="3888" protId="G3Q0Q2" geneId="NDUFAF6"/>
        <gene id="3890" protId="G3NHE4" geneId="uncharacterized_G3NHE4"/>
        <gene id="3894" protId="G3NB07" geneId="DBNL (2 of 2)"/>
        <gene id="3895" protId="G3P7K3" geneId="uncharacterized_G3P7K3"/>
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        <gene id="4382" protId="G3ND55" geneId="uncharacterized_G3ND55"/>
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        <gene id="5853" protId="G3P7G5" geneId="AADACL2"/>
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        <gene id="5858" protId="G3N5N8" geneId="COTL1"/>
        <gene id="5860" protId="G3P9N5" geneId="PINX1"/>
        <gene id="5862" protId="G3PTL2" geneId="C5orf44"/>
        <gene id="5864" protId="G3Q0I1" geneId="SDHC"/>
        <gene id="5866" protId="G3PAN5" geneId="NUF2"/>
        <gene id="5868" protId="G3PG46" geneId="ANAPC5"/>
        <gene id="5870" protId="G3P996" geneId="WIBG"/>
        <gene id="5872" protId="G3PJ42" geneId="ALYREF"/>
        <gene id="5874" protId="G3Q6D2" geneId="NDUFA5"/>
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        <gene id="6376" protId="G3PXZ1" geneId="uncharacterized_G3PXZ1"/>
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        <gene id="6658" protId="G3PU21" geneId="SERHL2"/>
        <gene id="6660" protId="G3P3P0" geneId="MRPL19"/>
        <gene id="6662" protId="G3Q9G8" geneId="SSBP1"/>
        <gene id="6664" protId="G3PF07" geneId="TTC36"/>
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        <gene id="6671" protId="G3NBA2" geneId="NDUFS5"/>
        <gene id="6673" protId="G3Q3C2" geneId="ATP6V0E1"/>
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    <notes>
      <additionalInformation abbreviation="G.aculeatus" link="http://www.uniprot.org/taxonomy/69293"/>
    </notes>
  </species>
  <species name="Marssonina brunnea f. sp. multigermtubi " NCBITaxId="1072389">
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        <gene id="6654" protId="K1WHJ1" geneId="MBM_09632"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="M.brunnea" link="http://www.uniprot.org/taxonomy/1072389"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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