<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1501" inparalogs="3983"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="F.radiculosa" link="http://www.uniprot.org/taxonomy/1078123"/>
    </notes>
  </species>
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        <gene id="3938" protId="E2M0L9" geneId="MPER_13205"/>
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        <gene id="3944" protId="E2M0R9" geneId="MPER_13259"/>
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        <gene id="3947" protId="E2M033" geneId="MPER_12995"/>
        <gene id="3950" protId="E2LP60" geneId="MPER_08650"/>
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        <gene id="3953" protId="E2LK27" geneId="MPER_06998"/>
        <gene id="3954" protId="E2LTX5" geneId="MPER_10567"/>
        <gene id="3956" protId="E2M6D4" geneId="MPER_16156"/>
        <gene id="3959" protId="E2LVB1" geneId="MPER_11127"/>
        <gene id="3960" protId="E2LTE3" geneId="MPER_10349"/>
        <gene id="3962" protId="E2LS29" geneId="MPER_09818"/>
        <gene id="3963" protId="E2LYM0" geneId="MPER_12413"/>
        <gene id="3965" protId="E2L3Y2" geneId="MPER_00339"/>
        <gene id="3967" protId="E2LEN7" geneId="MPER_04806"/>
        <gene id="3969" protId="E2LJ66" geneId="MPER_06635"/>
        <gene id="3971" protId="E2LDY2" geneId="MPER_04508"/>
        <gene id="3972" protId="E2LH28" geneId="MPER_05781"/>
        <gene id="3973" protId="E2LWT5" geneId="MPER_11721"/>
        <gene id="3974" protId="E2LVC5" geneId="MPER_11141"/>
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        <gene id="3981" protId="E2LHB5" geneId="MPER_05886"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="M.perniciosa" link="http://www.uniprot.org/taxonomy/554373"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="1304"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="1108"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1016"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="967"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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