<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1209" inparalogs="6073"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="E.histolytica" link="http://www.uniprot.org/taxonomy/5759"/>
    </notes>
  </species>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.tuberosum" link="http://www.uniprot.org/taxonomy/4113"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.14"/>
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      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="3">
      <score id="bit" value="1186"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.745"/>
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    <orthologGroup id="4">
      <score id="bit" value="1146"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.69"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1089"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1035"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.86"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="15">
        <score id="inparalog" value="0.916"/>
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      <geneRef id="16">
        <score id="inparalog" value="0.84"/>
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      <geneRef id="17">
        <score id="inparalog" value="0.827"/>
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        <score id="inparalog" value="0.714"/>
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      <score id="bit" value="1015"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="997"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="9">
      <score id="bit" value="982"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="24">
        <score id="inparalog" value="0.995"/>
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    </orthologGroup>
  </groups>
</orthoXML>
