<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="3786" inparalogs="9201"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Drosophila willistoni " NCBITaxId="7260">
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        <gene id="8945" protId="B4NL05" geneId="DwilGK14012"/>
        <gene id="8947" protId="B4N7C2" geneId="DwilGK21112"/>
        <gene id="8949" protId="B4NCP9" geneId="DwilGK25044"/>
        <gene id="8951" protId="B4NJV0" geneId="DwilGK13881"/>
        <gene id="8953" protId="B4MK42" geneId="DwilGK19311"/>
        <gene id="8954" protId="B4N557" geneId="DwilGK20508"/>
        <gene id="8956" protId="B4MLJ9" geneId="DwilGK16956"/>
        <gene id="8958" protId="B4MRJ4" geneId="DwilGK15741"/>
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        <gene id="8962" protId="B4MKG9" geneId="DwilGK17053"/>
        <gene id="8964" protId="B4N6N8" geneId="DwilGK12283"/>
        <gene id="8966" protId="B4N5F7" geneId="DwilGK20566"/>
        <gene id="8968" protId="B4N6I2" geneId="DwilGK12321"/>
        <gene id="8970" protId="B4NQZ3" geneId="DwilGK12688"/>
        <gene id="8972" protId="B4NK34" geneId="DwilGK14459"/>
        <gene id="8973" protId="B4NK24" geneId="DwilGK14455"/>
        <gene id="8974" protId="B4NK25" geneId="DwilGK12809"/>
        <gene id="8975" protId="B4NK35" geneId="DwilGK14460"/>
        <gene id="8976" protId="B4NK30" geneId="DwilGK14458"/>
        <gene id="8977" protId="B4NK32" geneId="DwilGK12804"/>
        <gene id="8978" protId="B4NK23" geneId="DwilGK14454"/>
        <gene id="8980" protId="B4MR01" geneId="DwilGK21349"/>
        <gene id="8982" protId="B4N8L7" geneId="DwilGK11013"/>
        <gene id="8984" protId="B4N6Q2" geneId="DwilGK12275"/>
        <gene id="8986" protId="B4NKR9" geneId="DwilGK13971"/>
        <gene id="8988" protId="B4ND43" geneId="DwilGK10158"/>
        <gene id="8990" protId="B4NEI0" geneId="DwilGK25645"/>
        <gene id="8992" protId="B4NHU0" geneId="DwilGK12991"/>
        <gene id="8994" protId="Q8I185" geneId="DwilGK22810"/>
        <gene id="8996" protId="B4MRD3" geneId="DwilGK15781"/>
        <gene id="8997" protId="B4MRD4" geneId="DwilGK15779"/>
        <gene id="9000" protId="B4MWB3" geneId="DwilGK14916"/>
        <gene id="9001" protId="B4MKG4" geneId="DwilGK20995"/>
        <gene id="9003" protId="B4NCG1" geneId="DwilGK18838"/>
        <gene id="9004" protId="B4MQQ7" geneId="DwilGK19385"/>
        <gene id="9006" protId="B4NA13" geneId="DwilGK12240"/>
        <gene id="9007" protId="B4MMV8" geneId="DwilGK17585"/>
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        <gene id="9033" protId="B4MYV4" geneId="DwilGK18164"/>
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        <gene id="9037" protId="B4N0Y1" geneId="DwilGK24841"/>
        <gene id="9076" protId="B4N6B9" geneId="DwilGK17763"/>
        <gene id="9077" protId="B4MQD1" geneId="DwilGK21440"/>
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        <gene id="9081" protId="B4MV24" geneId="DwilGK15418"/>
        <gene id="9083" protId="B4MN99" geneId="DwilGK17087"/>
        <gene id="9085" protId="B4MVJ0" geneId="DwilGK15088"/>
        <gene id="9087" protId="B4N1Z2" geneId="DwilGK16399"/>
        <gene id="9089" protId="B4N560" geneId="DwilGK20510"/>
        <gene id="9091" protId="B4N369" geneId="GK12642"/>
        <gene id="9093" protId="B4NKC5" geneId="DwilGK13353"/>
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        <gene id="9104" protId="B4N4Q7" geneId="DwilGK12484"/>
        <gene id="9106" protId="B4MUW9" geneId="DwilGK14724"/>
        <gene id="9108" protId="B4NG97" geneId="DwilGK22787"/>
        <gene id="9110" protId="B4NHU5" geneId="DwilGK12989"/>
        <gene id="9112" protId="B4NLL1" geneId="DwilGK18421"/>
        <gene id="9114" protId="B4N4V8" geneId="DwilGK20455"/>
        <gene id="9116" protId="B4MRK2" geneId="DwilGK15736"/>
        <gene id="9117" protId="B4N7B2" geneId="DwilGK21105"/>
        <gene id="9119" protId="B4MQQ9" geneId="DwilGK21388"/>
        <gene id="9121" protId="B4NNF8" geneId="DwilGK23305"/>
        <gene id="9123" protId="B4NIZ9" geneId="DwilGK12896"/>
        <gene id="9125" protId="B4NAV3" geneId="DwilGK11303"/>
        <gene id="9127" protId="B4MP88" geneId="DwilGK21655"/>
        <gene id="9129" protId="B4MZ94" geneId="DwilGK18126"/>
        <gene id="9131" protId="B4NQ78" geneId="DwilGK15843"/>
        <gene id="9133" protId="B4NFN0" geneId="DwilGK22495"/>
        <gene id="9135" protId="B4MK61" geneId="DwilGK19310"/>
        <gene id="9137" protId="B4MYI6" geneId="DwilGK22228"/>
        <gene id="9139" protId="B4NBG1" geneId="DwilGK11189"/>
        <gene id="9141" protId="B4N700" geneId="DwilGK24376"/>
        <gene id="9143" protId="B4NFW1" geneId="DwilGK22455"/>
        <gene id="9145" protId="B4NMH7" geneId="DwilGK23086"/>
        <gene id="9147" protId="B4NFS7" geneId="DwilGK22470"/>
        <gene id="9149" protId="B4MI16" geneId="DwilGK18638"/>
        <gene id="9159" protId="B4MS05" geneId="DwilGK15924"/>
        <gene id="9160" protId="B4MS03" geneId="DwilGK15658"/>
        <gene id="9166" protId="B4NBA4" geneId="DwilGK11857"/>
        <gene id="9169" protId="B4MJL4" geneId="DwilGK20790"/>
        <gene id="9171" protId="B4MV38" geneId="DwilGK19026"/>
        <gene id="9173" protId="B4NAH8" geneId="DwilGK11721"/>
        <gene id="9174" protId="B4NAH9" geneId="DwilGK11722"/>
        <gene id="9175" protId="B4MV98" geneId="DwilGK15457"/>
        <gene id="9180" protId="B4MN90" geneId="DwilGK16542"/>
        <gene id="9182" protId="B4MYS3" geneId="DwilGK18180"/>
        <gene id="9184" protId="B4ML67" geneId="DwilGK16811"/>
        <gene id="9185" protId="B4N3B1" geneId="DwilGK12497"/>
        <gene id="9187" protId="B4NEL4" geneId="DwilGK25664"/>
        <gene id="9188" protId="B4NKV1" geneId="DwilGK12737"/>
        <gene id="9190" protId="B4N6F6" geneId="DwilGK17742"/>
        <gene id="9192" protId="B4NHP5" geneId="DwilGK14229"/>
        <gene id="9194" protId="B4NJI6" geneId="DwilGK13429"/>
        <gene id="9196" protId="B4MT19" geneId="DwilGK20077"/>
        <gene id="9198" protId="B4N4Q8" geneId="DwilGK10410"/>
        <gene id="9200" protId="B4MK46" geneId="DwilGK20682"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="D.willistoni" link="http://www.uniprot.org/taxonomy/7260"/>
    </notes>
  </species>
  <species name="Trichoplax adhaerens " NCBITaxId="10228">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="8824" protId="B3RV81" geneId="TRIADDRAFT_55559"/>
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        <gene id="8828" protId="B3SCZ6" geneId="TRIADDRAFT_62153"/>
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        <gene id="8833" protId="B3S9Y7" geneId="TRIADDRAFT_61072"/>
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        <gene id="8849" protId="B3RW21" geneId="TRIADDRAFT_55857"/>
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        <gene id="8870" protId="B3RV37" geneId="TRIADDRAFT_55514"/>
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        <gene id="8896" protId="B3RRV8" geneId="TRIADDRAFT_54384"/>
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        <gene id="8902" protId="B3RZX7" geneId="TRIADDRAFT_16598"/>
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        <gene id="8906" protId="B3RVB3" geneId="TRIADDRAFT_55593"/>
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        <gene id="8942" protId="B3RLA3" geneId="TRIADDRAFT_51936"/>
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        <gene id="8946" protId="B3RRP1" geneId="TRIADDRAFT_54312"/>
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        <gene id="8950" protId="B3S426" geneId="TRIADDRAFT_58930"/>
        <gene id="8952" protId="B3SCL0" geneId="TRIADDRAFT_62010"/>
        <gene id="8955" protId="B3RVW7" geneId="TRIADDRAFT_63884"/>
        <gene id="8957" protId="B3RX57" geneId="TRIADDRAFT_57004"/>
        <gene id="8959" protId="B3RWD7" geneId="TRIADDRAFT_24947"/>
        <gene id="8961" protId="B3RYY9" geneId="TRIADDRAFT_57265"/>
        <gene id="8963" protId="B3S6Y9" geneId="TRIADDRAFT_30441"/>
        <gene id="8965" protId="B3RPT4" geneId="TRIADDRAFT_53654"/>
        <gene id="8967" protId="B3RT23" geneId="TRIADDRAFT_54810"/>
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        <gene id="8971" protId="B3SE67" geneId="TRIADDRAFT_2795"/>
        <gene id="8979" protId="B3S5D9" geneId="TRIADDRAFT_59292"/>
        <gene id="8981" protId="B3RPR7" geneId="TRIADDRAFT_53638"/>
        <gene id="8983" protId="B3RIJ3" geneId="TRIADDRAFT_51338"/>
        <gene id="8985" protId="B3RVJ3" geneId="TRIADDRAFT_55673"/>
        <gene id="8987" protId="B3RKY7" geneId="TRIADDRAFT_51814"/>
        <gene id="8989" protId="B3S060" geneId="TRIADDRAFT_64036"/>
        <gene id="8991" protId="B3S6E6" geneId="TRIADDRAFT_59778"/>
        <gene id="8993" protId="B3S9W5" geneId="TRIADDRAFT_61049"/>
        <gene id="8995" protId="B3S5A3" geneId="TRIADDRAFT_8347"/>
        <gene id="8998" protId="B3SCI2" geneId="TRIADDRAFT_33290"/>
        <gene id="8999" protId="B3S842" geneId="TRIADDRAFT_30887"/>
        <gene id="9002" protId="B3RXM6" geneId="TRIADDRAFT_56262"/>
        <gene id="9005" protId="B3RZW7" geneId="TRIADDRAFT_18052"/>
        <gene id="9008" protId="B3S7K8" geneId="TRIADDRAFT_38228"/>
        <gene id="9010" protId="B3RLS0" geneId="TRIADDRAFT_52099"/>
        <gene id="9012" protId="B3RNQ7" geneId="TRIADDRAFT_53252"/>
        <gene id="9014" protId="B3RZJ6" geneId="TRIADDRAFT_8831"/>
        <gene id="9016" protId="B3S2W5" geneId="TRIADDRAFT_58506"/>
        <gene id="9018" protId="B3S393" geneId="TRIADDRAFT_58639"/>
        <gene id="9020" protId="B3RWZ3" geneId="TRIADDRAFT_56937"/>
        <gene id="9022" protId="B3S7W7" geneId="TRIADDRAFT_60322"/>
        <gene id="9024" protId="B3S8W1" geneId="TRIADDRAFT_60763"/>
        <gene id="9027" protId="B3S8H6" geneId="TRIADDRAFT_60544"/>
        <gene id="9029" protId="B3S580" geneId="TRIADDRAFT_59229"/>
        <gene id="9030" protId="B3S581" geneId="TRIADDRAFT_59230"/>
        <gene id="9032" protId="B3RUN5" geneId="TRIADDRAFT_55354"/>
        <gene id="9034" protId="B3S6D3" geneId="TRIADDRAFT_59765"/>
        <gene id="9036" protId="B3RNV2" geneId="TRIADDRAFT_53300"/>
        <gene id="9038" protId="B3RMV5" geneId="TRIADDRAFT_20567"/>
        <gene id="9039" protId="B3RMV6" geneId="TRIADDRAFT_21571"/>
        <gene id="9040" protId="B3SDY3" geneId="TRIADDRAFT_34198"/>
        <gene id="9041" protId="B3SEX0" geneId="TRIADDRAFT_62797"/>
        <gene id="9042" protId="B3RKA3" geneId="TRIADDRAFT_52771"/>
        <gene id="9043" protId="B3SE02" geneId="TRIADDRAFT_62505"/>
        <gene id="9044" protId="B3SDV7" geneId="TRIADDRAFT_34167"/>
        <gene id="9045" protId="B3RK80" geneId="TRIADDRAFT_52747"/>
        <gene id="9046" protId="B3SAQ1" geneId="TRIADDRAFT_61338"/>
        <gene id="9047" protId="B3SBQ0" geneId="TRIADDRAFT_32918"/>
        <gene id="9048" protId="B3RKC0" geneId="TRIADDRAFT_18878"/>
        <gene id="9049" protId="B3S9R4" geneId="TRIADDRAFT_2616"/>
        <gene id="9050" protId="B3SEE6" geneId="TRIADDRAFT_34474"/>
        <gene id="9051" protId="B3SE54" geneId="TRIADDRAFT_3227"/>
        <gene id="9052" protId="B3SFE4" geneId="TRIADDRAFT_35003"/>
        <gene id="9053" protId="B3S4W7" geneId="TRIADDRAFT_29146"/>
        <gene id="9054" protId="B3S5K3" geneId="TRIADDRAFT_29925"/>
        <gene id="9055" protId="B3SBQ1" geneId="TRIADDRAFT_61695"/>
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        <gene id="9057" protId="B3RKA7" geneId="TRIADDRAFT_52775"/>
        <gene id="9058" protId="B3SDK7" geneId="TRIADDRAFT_4945"/>
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        <gene id="9060" protId="B3SE01" geneId="TRIADDRAFT_62504"/>
        <gene id="9061" protId="B3S9F1" geneId="TRIADDRAFT_60883"/>
        <gene id="9062" protId="B3SCW2" geneId="TRIADDRAFT_62116"/>
        <gene id="9063" protId="B3RMR1" geneId="TRIADDRAFT_52892"/>
        <gene id="9064" protId="B3SE52" geneId="TRIADDRAFT_3429"/>
        <gene id="9065" protId="B3RMM8" geneId="TRIADDRAFT_21354"/>
        <gene id="9066" protId="B3SB48" geneId="TRIADDRAFT_6368"/>
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        <gene id="9071" protId="B3SE04" geneId="TRIADDRAFT_62507"/>
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        <gene id="9082" protId="B3S884" geneId="TRIADDRAFT_60445"/>
        <gene id="9084" protId="B3RSY6" geneId="TRIADDRAFT_54773"/>
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        <gene id="9088" protId="B3RUM6" geneId="TRIADDRAFT_55346"/>
        <gene id="9090" protId="B3RWD3" geneId="TRIADDRAFT_56709"/>
        <gene id="9092" protId="B3S8U4" geneId="TRIADDRAFT_60747"/>
        <gene id="9094" protId="B3SA08" geneId="TRIADDRAFT_61093"/>
        <gene id="9096" protId="B3SCY9" geneId="TRIADDRAFT_62145"/>
        <gene id="9097" protId="B3SCZ1" geneId="TRIADDRAFT_62147"/>
        <gene id="9099" protId="B3RJ70" geneId="TRIADDRAFT_51431"/>
        <gene id="9101" protId="B3RKY6" geneId="TRIADDRAFT_63491"/>
        <gene id="9103" protId="B3RN86" geneId="TRIADDRAFT_63619"/>
        <gene id="9105" protId="B3RUG6" geneId="TRIADDRAFT_55281"/>
        <gene id="9107" protId="B3S4N6" geneId="TRIADDRAFT_59152"/>
        <gene id="9109" protId="B3RLY5" geneId="TRIADDRAFT_52168"/>
        <gene id="9111" protId="B3RZH0" geneId="TRIADDRAFT_27023"/>
        <gene id="9113" protId="B3RYE7" geneId="TRIADDRAFT_56532"/>
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        <gene id="9124" protId="B3RZY0" geneId="TRIADDRAFT_64027"/>
        <gene id="9126" protId="B3RIV1" geneId="TRIADDRAFT_51379"/>
        <gene id="9128" protId="B3SDH0" geneId="TRIADDRAFT_62326"/>
        <gene id="9130" protId="B3S754" geneId="TRIADDRAFT_60045"/>
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        <gene id="9138" protId="B3S4E6" geneId="TRIADDRAFT_28528"/>
        <gene id="9140" protId="B3RSH8" geneId="TRIADDRAFT_54602"/>
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        <gene id="9146" protId="B3S7G5" geneId="TRIADDRAFT_60156"/>
        <gene id="9148" protId="B3SFH2" geneId="TRIADDRAFT_35047"/>
        <gene id="9150" protId="B3RKR7" geneId="TRIADDRAFT_9531"/>
        <gene id="9151" protId="B3S8U8" geneId="TRIADDRAFT_9560"/>
        <gene id="9152" protId="B3RKR5" geneId="TRIADDRAFT_9507"/>
        <gene id="9153" protId="B3RKR6" geneId="TRIADDRAFT_9561"/>
        <gene id="9154" protId="B3RJN6" geneId="TRIADDRAFT_18102"/>
        <gene id="9155" protId="B3RUB8" geneId="TRIADDRAFT_9432"/>
        <gene id="9156" protId="B3S8D6" geneId="TRIADDRAFT_9590"/>
        <gene id="9157" protId="B3RUC1" geneId="TRIADDRAFT_9389"/>
        <gene id="9158" protId="B3S8U5" geneId="TRIADDRAFT_31334"/>
        <gene id="9161" protId="B3RMX4" geneId="TRIADDRAFT_21755"/>
        <gene id="9162" protId="B3RIY2" geneId="TRIADDRAFT_19608"/>
        <gene id="9163" protId="B3RUC4" geneId="TRIADDRAFT_24518"/>
        <gene id="9164" protId="B3SD22" geneId="TRIADDRAFT_17959"/>
        <gene id="9165" protId="B3S7I6" geneId="TRIADDRAFT_30575"/>
        <gene id="9167" protId="B3S6K0" geneId="TRIADDRAFT_59832"/>
        <gene id="9168" protId="B3SDK5" geneId="TRIADDRAFT_62364"/>
        <gene id="9170" protId="B3RKG8" geneId="TRIADDRAFT_51675"/>
        <gene id="9172" protId="B3S8D7" geneId="TRIADDRAFT_60503"/>
        <gene id="9176" protId="B3S1I7" geneId="TRIADDRAFT_58304"/>
        <gene id="9177" protId="B3S1I8" geneId="TRIADDRAFT_58305"/>
        <gene id="9178" protId="B3S1I9" geneId="TRIADDRAFT_58306"/>
        <gene id="9179" protId="B3RYU3" geneId="TRIADDRAFT_26354"/>
        <gene id="9181" protId="B3SCT2" geneId="TRIADDRAFT_7208"/>
        <gene id="9183" protId="B3S3G8" geneId="TRIADDRAFT_58716"/>
        <gene id="9186" protId="B3S1R9" geneId="TRIADDRAFT_50459"/>
        <gene id="9189" protId="B3S2A2" geneId="TRIADDRAFT_58431"/>
        <gene id="9191" protId="B3RU56" geneId="TRIADDRAFT_55163"/>
        <gene id="9193" protId="B3RNA1" geneId="TRIADDRAFT_53092"/>
        <gene id="9195" protId="B3RY75" geneId="TRIADDRAFT_56462"/>
        <gene id="9197" protId="B3S6E4" geneId="TRIADDRAFT_59776"/>
        <gene id="9199" protId="B3S4S0" geneId="TRIADDRAFT_59323"/>
        <gene id="9201" protId="B3RMM7" geneId="TRIADDRAFT_37130"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="T.adhaerens" link="http://www.uniprot.org/taxonomy/10228"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="5701"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="4887"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="0.237"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="4400"/>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="4315"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="4034"/>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="3347"/>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="3113"/>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="2861"/>
      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="2771"/>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
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