<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2348" inparalogs="6714"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Drosophila willistoni " NCBITaxId="7260">
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    <notes>
      <additionalInformation abbreviation="D.willistoni" link="http://www.uniprot.org/taxonomy/7260"/>
    </notes>
  </species>
  <species name="Phytophthora ramorum PE=2 SV=1" NCBITaxId="164328">
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        <gene id="1966" protId="H3GH23" geneId="uncharacterized_H3GH23"/>
        <gene id="1967" protId="H3GH24" geneId="uncharacterized_H3GH24"/>
        <gene id="1968" protId="H3G995" geneId="uncharacterized_H3G995"/>
        <gene id="1971" protId="H3GBZ7" geneId="uncharacterized_H3GBZ7"/>
        <gene id="1974" protId="H3GTW5" geneId="uncharacterized_H3GTW5"/>
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        <gene id="2003" protId="H3GKZ8" geneId="uncharacterized_H3GKZ8"/>
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        <gene id="6389" protId="H3GMT6" geneId="uncharacterized_H3GMT6"/>
        <gene id="6391" protId="H3GEB4" geneId="uncharacterized_H3GEB4"/>
        <gene id="6392" protId="H3H9P8" geneId="fgenesh1_pg.C_scaffold_2218000001"/>
        <gene id="6395" protId="H3G7Q1" geneId="gwEuk.73.40.1"/>
        <gene id="6397" protId="H3G6J0" geneId="gwEuk.28.97.1"/>
        <gene id="6399" protId="H3GXK3" geneId="uncharacterized_H3GXK3"/>
        <gene id="6401" protId="H3GIG4" geneId="uncharacterized_H3GIG4"/>
        <gene id="6403" protId="H3HD35" geneId="uncharacterized_H3HD35"/>
        <gene id="6405" protId="H3GTH6" geneId="uncharacterized_H3GTH6"/>
        <gene id="6407" protId="H3G6V6" geneId="gwEuk.378.2.1"/>
        <gene id="6408" protId="H3GVV1" geneId="uncharacterized_H3GVV1"/>
        <gene id="6409" protId="H3GVV0" geneId="uncharacterized_H3GVV0"/>
        <gene id="6410" protId="H3GVV3" geneId="uncharacterized_H3GVV3"/>
        <gene id="6413" protId="H3GS60" geneId="uncharacterized_H3GS60"/>
        <gene id="6416" protId="H3GUZ8" geneId="uncharacterized_H3GUZ8"/>
        <gene id="6418" protId="H3GD79" geneId="uncharacterized_H3GD79"/>
        <gene id="6420" protId="H3HBF5" geneId="uncharacterized_H3HBF5"/>
        <gene id="6422" protId="H3H3B6" geneId="uncharacterized_H3H3B6"/>
        <gene id="6424" protId="H3GG12" geneId="uncharacterized_H3GG12"/>
        <gene id="6425" protId="H3GV20" geneId="uncharacterized_H3GV20"/>
        <gene id="6426" protId="H3GUW3" geneId="uncharacterized_H3GUW3"/>
        <gene id="6427" protId="H3GN86" geneId="uncharacterized_H3GN86"/>
        <gene id="6428" protId="H3GJC1" geneId="uncharacterized_H3GJC1"/>
        <gene id="6429" protId="H3H1V8" geneId="uncharacterized_H3H1V8"/>
        <gene id="6431" protId="H3G587" geneId="gwEuk.12.104.1"/>
        <gene id="6433" protId="H3GH41" geneId="uncharacterized_H3GH41"/>
        <gene id="6435" protId="H3GHN0" geneId="uncharacterized_H3GHN0"/>
        <gene id="6437" protId="H3GKN2" geneId="uncharacterized_H3GKN2"/>
        <gene id="6439" protId="H3GZE4" geneId="uncharacterized_H3GZE4"/>
        <gene id="6446" protId="H3GE35" geneId="uncharacterized_H3GE35"/>
        <gene id="6449" protId="H3GT07" geneId="uncharacterized_H3GT07"/>
        <gene id="6451" protId="H3GGU1" geneId="uncharacterized_H3GGU1"/>
        <gene id="6453" protId="H3GFF8" geneId="uncharacterized_H3GFF8"/>
        <gene id="6455" protId="H3GBD4" geneId="uncharacterized_H3GBD4"/>
        <gene id="6457" protId="H3GXY9" geneId="uncharacterized_H3GXY9"/>
        <gene id="6458" protId="H3GER2" geneId="uncharacterized_H3GER2"/>
        <gene id="6459" protId="H3GER3" geneId="uncharacterized_H3GER3"/>
        <gene id="6461" protId="H3HEA0" geneId="uncharacterized_H3HEA0"/>
        <gene id="6465" protId="H3H1G0" geneId="uncharacterized_H3H1G0"/>
        <gene id="6466" protId="H3H8P9" geneId="fgenesh1_pg.C_scaffold_1645000003"/>
        <gene id="6467" protId="H3GDE0" geneId="uncharacterized_H3GDE0"/>
        <gene id="6468" protId="H3GBB5" geneId="uncharacterized_H3GBB5"/>
        <gene id="6469" protId="H3GCT7" geneId="uncharacterized_H3GCT7"/>
        <gene id="6470" protId="H3GD73" geneId="uncharacterized_H3GD73"/>
        <gene id="6471" protId="H3HB18" geneId="uncharacterized_H3HB18"/>
        <gene id="6472" protId="H3GD72" geneId="uncharacterized_H3GD72"/>
        <gene id="6473" protId="H3HB19" geneId="uncharacterized_H3HB19"/>
        <gene id="6475" protId="H3GQ37" geneId="uncharacterized_H3GQ37"/>
        <gene id="6476" protId="H3H7U7" geneId="fgenesh1_pg.C_scaffold_1313000001"/>
        <gene id="6478" protId="H3G5V4" geneId="gwEuk.19.27.1"/>
        <gene id="6480" protId="H3GE51" geneId="uncharacterized_H3GE51"/>
        <gene id="6482" protId="H3GQL3" geneId="uncharacterized_H3GQL3"/>
        <gene id="6484" protId="H3GMC6" geneId="uncharacterized_H3GMC6"/>
        <gene id="6486" protId="H3HEC2" geneId="uncharacterized_H3HEC2"/>
        <gene id="6488" protId="H3H3F1" geneId="uncharacterized_H3H3F1"/>
        <gene id="6491" protId="H3GFQ8" geneId="uncharacterized_H3GFQ8"/>
        <gene id="6493" protId="H3GED1" geneId="uncharacterized_H3GED1"/>
        <gene id="6495" protId="H3GTK4" geneId="uncharacterized_H3GTK4"/>
        <gene id="6502" protId="H3GM65" geneId="uncharacterized_H3GM65"/>
        <gene id="6505" protId="H3GHF6" geneId="uncharacterized_H3GHF6"/>
        <gene id="6508" protId="H3HBU1" geneId="uncharacterized_H3HBU1"/>
        <gene id="6510" protId="H3GJ69" geneId="uncharacterized_H3GJ69"/>
        <gene id="6512" protId="H3GSE0" geneId="uncharacterized_H3GSE0"/>
        <gene id="6514" protId="H3GE23" geneId="uncharacterized_H3GE23"/>
        <gene id="6516" protId="H3GGF3" geneId="uncharacterized_H3GGF3"/>
        <gene id="6518" protId="H3HCH0" geneId="uncharacterized_H3HCH0"/>
        <gene id="6541" protId="H3GG32" geneId="uncharacterized_H3GG32"/>
        <gene id="6542" protId="H3GXI6" geneId="uncharacterized_H3GXI6"/>
        <gene id="6543" protId="H3HDN1" geneId="uncharacterized_H3HDN1"/>
        <gene id="6549" protId="H3GQA5" geneId="uncharacterized_H3GQA5"/>
        <gene id="6550" protId="H3H858" geneId="fgenesh1_pg.C_scaffold_1408000003"/>
        <gene id="6551" protId="H3GNJ6" geneId="uncharacterized_H3GNJ6"/>
        <gene id="6552" protId="H3GNJ7" geneId="uncharacterized_H3GNJ7"/>
        <gene id="6553" protId="H3GNJ8" geneId="uncharacterized_H3GNJ8"/>
        <gene id="6561" protId="H3GBR0" geneId="uncharacterized_H3GBR0"/>
        <gene id="6563" protId="H3GYA9" geneId="uncharacterized_H3GYA9"/>
        <gene id="6564" protId="H3GYB1" geneId="uncharacterized_H3GYB1"/>
        <gene id="6565" protId="H3GFR2" geneId="uncharacterized_H3GFR2"/>
        <gene id="6568" protId="H3GMK0" geneId="uncharacterized_H3GMK0"/>
        <gene id="6570" protId="H3GR50" geneId="uncharacterized_H3GR50"/>
        <gene id="6571" protId="H3GHU4" geneId="uncharacterized_H3GHU4"/>
        <gene id="6573" protId="H3HCV9" geneId="uncharacterized_H3HCV9"/>
        <gene id="6574" protId="H3GNG9" geneId="uncharacterized_H3GNG9"/>
        <gene id="6576" protId="H3GH69" geneId="uncharacterized_H3GH69"/>
        <gene id="6578" protId="H3GJ45" geneId="uncharacterized_H3GJ45"/>
        <gene id="6580" protId="H3GSV9" geneId="uncharacterized_H3GSV9"/>
        <gene id="6582" protId="H3HBX8" geneId="uncharacterized_H3HBX8"/>
        <gene id="6584" protId="H3G5H3" geneId="gwEuk.14.267.1"/>
        <gene id="6586" protId="H3GWZ0" geneId="uncharacterized_H3GWZ0"/>
        <gene id="6588" protId="H3H785" geneId="uncharacterized_H3H785"/>
        <gene id="6589" protId="H3GV95" geneId="uncharacterized_H3GV95"/>
        <gene id="6590" protId="H3H5X0" geneId="uncharacterized_H3H5X0"/>
        <gene id="6591" protId="H3H628" geneId="uncharacterized_H3H628"/>
        <gene id="6592" protId="H3GF22" geneId="uncharacterized_H3GF22"/>
        <gene id="6593" protId="H3H8B3" geneId="fgenesh1_pg.C_scaffold_1475000001"/>
        <gene id="6594" protId="H3GT65" geneId="uncharacterized_H3GT65"/>
        <gene id="6595" protId="H3GLY6" geneId="uncharacterized_H3GLY6"/>
        <gene id="6596" protId="H3H3G5" geneId="uncharacterized_H3H3G5"/>
        <gene id="6597" protId="H3H454" geneId="uncharacterized_H3H454"/>
        <gene id="6598" protId="H3GTG7" geneId="uncharacterized_H3GTG7"/>
        <gene id="6599" protId="H3GLY7" geneId="uncharacterized_H3GLY7"/>
        <gene id="6600" protId="H3H417" geneId="uncharacterized_H3H417"/>
        <gene id="6601" protId="H3H558" geneId="uncharacterized_H3H558"/>
        <gene id="6602" protId="H3GZJ6" geneId="uncharacterized_H3GZJ6"/>
        <gene id="6603" protId="H3H636" geneId="uncharacterized_H3H636"/>
        <gene id="6604" protId="H3GE25" geneId="uncharacterized_H3GE25"/>
        <gene id="6605" protId="H3H786" geneId="uncharacterized_H3H786"/>
        <gene id="6606" protId="H3GEX6" geneId="uncharacterized_H3GEX6"/>
        <gene id="6607" protId="H3GSL0" geneId="uncharacterized_H3GSL0"/>
        <gene id="6608" protId="H3GE02" geneId="uncharacterized_H3GE02"/>
        <gene id="6609" protId="H3GUK0" geneId="uncharacterized_H3GUK0"/>
        <gene id="6610" protId="H3H7R6" geneId="fgenesh1_pg.C_scaffold_1293000001"/>
        <gene id="6611" protId="H3H7T8" geneId="fgenesh1_pg.C_scaffold_1307000001"/>
        <gene id="6617" protId="H3GGJ3" geneId="uncharacterized_H3GGJ3"/>
        <gene id="6619" protId="H3GC28" geneId="uncharacterized_H3GC28"/>
        <gene id="6629" protId="H3HBL9" geneId="uncharacterized_H3HBL9"/>
        <gene id="6630" protId="H3HBL8" geneId="uncharacterized_H3HBL8"/>
        <gene id="6633" protId="H3GI70" geneId="uncharacterized_H3GI70"/>
        <gene id="6635" protId="H3H2V2" geneId="uncharacterized_H3H2V2"/>
        <gene id="6637" protId="H3H856" geneId="fgenesh1_pg.C_scaffold_1408000001"/>
        <gene id="6639" protId="H3HBZ6" geneId="uncharacterized_H3HBZ6"/>
        <gene id="6641" protId="H3H7N6" geneId="fgenesh1_pg.C_scaffold_1271000001"/>
        <gene id="6642" protId="H3GFV3" geneId="uncharacterized_H3GFV3"/>
        <gene id="6643" protId="H3GE24" geneId="uncharacterized_H3GE24"/>
        <gene id="6646" protId="H3HEB7" geneId="uncharacterized_H3HEB7"/>
        <gene id="6648" protId="H3GMA3" geneId="uncharacterized_H3GMA3"/>
        <gene id="6650" protId="H3GET2" geneId="uncharacterized_H3GET2"/>
        <gene id="6652" protId="H3GEE8" geneId="uncharacterized_H3GEE8"/>
        <gene id="6654" protId="H3GLQ8" geneId="uncharacterized_H3GLQ8"/>
        <gene id="6673" protId="H3H5Q7" geneId="uncharacterized_H3H5Q7"/>
        <gene id="6674" protId="H3GXF5" geneId="uncharacterized_H3GXF5"/>
        <gene id="6675" protId="H3GXF4" geneId="uncharacterized_H3GXF4"/>
        <gene id="6676" protId="H3GV68" geneId="uncharacterized_H3GV68"/>
        <gene id="6677" protId="H3H1G8" geneId="uncharacterized_H3H1G8"/>
        <gene id="6678" protId="H3GUR1" geneId="uncharacterized_H3GUR1"/>
        <gene id="6679" protId="H3GV67" geneId="uncharacterized_H3GV67"/>
        <gene id="6680" protId="H3GZR4" geneId="uncharacterized_H3GZR4"/>
        <gene id="6681" protId="H3GEV4" geneId="uncharacterized_H3GEV4"/>
        <gene id="6682" protId="H3HCW4" geneId="uncharacterized_H3HCW4"/>
        <gene id="6686" protId="H3GXF0" geneId="uncharacterized_H3GXF0"/>
        <gene id="6687" protId="H3GXE9" geneId="uncharacterized_H3GXE9"/>
        <gene id="6688" protId="H3GXE7" geneId="uncharacterized_H3GXE7"/>
        <gene id="6689" protId="H3GGC1" geneId="uncharacterized_H3GGC1"/>
        <gene id="6690" protId="H3GSX3" geneId="uncharacterized_H3GSX3"/>
        <gene id="6691" protId="H3GYW8" geneId="uncharacterized_H3GYW8"/>
        <gene id="6692" protId="H3GXE6" geneId="uncharacterized_H3GXE6"/>
        <gene id="6693" protId="H3GGC2" geneId="uncharacterized_H3GGC2"/>
        <gene id="6694" protId="H3GF57" geneId="uncharacterized_H3GF57"/>
        <gene id="6695" protId="H3GXE8" geneId="uncharacterized_H3GXE8"/>
        <gene id="6696" protId="H3GVD8" geneId="uncharacterized_H3GVD8"/>
        <gene id="6697" protId="H3H6G9" geneId="uncharacterized_H3H6G9"/>
        <gene id="6699" protId="H3GFS1" geneId="uncharacterized_H3GFS1"/>
        <gene id="6701" protId="H3GGV6" geneId="uncharacterized_H3GGV6"/>
        <gene id="6703" protId="H3GY39" geneId="uncharacterized_H3GY39"/>
        <gene id="6709" protId="H3GVL5" geneId="uncharacterized_H3GVL5"/>
        <gene id="6710" protId="H3HEA4" geneId="uncharacterized_H3HEA4"/>
        <gene id="6712" protId="H3G5I4" geneId="gwEuk.141.11.1"/>
        <gene id="6714" protId="H3GNU9" geneId="uncharacterized_H3GNU9"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.ramorum" link="http://www.uniprot.org/taxonomy/164328"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3833"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="3365"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="3164"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="2956"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="0.317"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="0.208"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.143"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1872"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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