<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="111" inparalogs="267"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Dictyoglomus turgidum " NCBITaxId="515635">
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      <genes>
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        <gene id="3" protId="B8E137" geneId="atpB"/>
        <gene id="5" protId="B8E152" geneId="Dtur_0899"/>
        <gene id="6" protId="B8E117" geneId="Dtur_1480"/>
        <gene id="8" protId="B8E028" geneId="proS"/>
        <gene id="10" protId="B8E226" geneId="alaS"/>
        <gene id="12" protId="B8E292" geneId="valS"/>
        <gene id="14" protId="B8E008" geneId="glyA"/>
        <gene id="16" protId="B8E223" geneId="glmS"/>
        <gene id="18" protId="B8DYS7" geneId="Dtur_0127"/>
        <gene id="20" protId="B8E1C7" geneId="rpoC"/>
        <gene id="23" protId="B8DZX8" geneId="lig"/>
        <gene id="25" protId="B8E1K1" geneId="Dtur_0197"/>
        <gene id="27" protId="B8E279" geneId="mutS"/>
        <gene id="29" protId="B8DZS1" geneId="iscS"/>
        <gene id="31" protId="B8E0F4" geneId="pyrG"/>
        <gene id="33" protId="B8E391" geneId="cysS"/>
        <gene id="35" protId="B8E1C6" geneId="rpoB"/>
        <gene id="38" protId="B8E0R9" geneId="serS"/>
        <gene id="40" protId="B8E2N5" geneId="tgt"/>
        <gene id="42" protId="B8E005" geneId="Dtur_0807"/>
        <gene id="44" protId="B8DYH6" geneId="dnaK"/>
        <gene id="46" protId="B8E1I5" geneId="Dtur_0181"/>
        <gene id="48" protId="B8E0S0" geneId="Dtur_1383"/>
        <gene id="50" protId="B8E0P8" geneId="Dtur_1796"/>
        <gene id="52" protId="B8DZQ1" geneId="Dtur_0699"/>
        <gene id="54" protId="B8E184" geneId="asnS"/>
        <gene id="56" protId="B8E2D3" geneId="pgk"/>
        <gene id="58" protId="B8E2A9" geneId="lepA"/>
        <gene id="60" protId="B8E1A0" geneId="smc"/>
        <gene id="63" protId="B8E2G8" geneId="ffh"/>
        <gene id="65" protId="B8E2J2" geneId="Dtur_1562"/>
        <gene id="67" protId="B8E1Z0" geneId="Dtur_0473"/>
        <gene id="70" protId="B8E145" geneId="Dtur_0892"/>
        <gene id="72" protId="B8E1P8" geneId="Dtur_0247"/>
        <gene id="73" protId="B8E023" geneId="Dtur_0825"/>
        <gene id="76" protId="B8E2H7" geneId="gyrB"/>
        <gene id="78" protId="B8E1I7" geneId="Dtur_0183"/>
        <gene id="80" protId="B8DZJ4" geneId="Dtur_0642"/>
        <gene id="81" protId="B8DZC6" geneId="Dtur_0569"/>
        <gene id="82" protId="B8DZM5" geneId="Dtur_0673"/>
        <gene id="83" protId="B8DZJ3" geneId="Dtur_0641"/>
        <gene id="86" protId="B8DYL0" geneId="Dtur_0054"/>
        <gene id="88" protId="B8DYX9" geneId="Dtur_0280"/>
        <gene id="90" protId="B8DZM6" geneId="Dtur_0674"/>
        <gene id="91" protId="B8DZC5" geneId="Dtur_0568"/>
        <gene id="93" protId="B8E1B4" geneId="gcp"/>
        <gene id="95" protId="B8E1Q7" geneId="metG"/>
        <gene id="97" protId="B8E280" geneId="mutL"/>
        <gene id="99" protId="B8E2Y7" geneId="infB"/>
        <gene id="101" protId="B8DZV9" geneId="Dtur_0760"/>
        <gene id="103" protId="B8DYU0" geneId="Dtur_0141"/>
        <gene id="106" protId="B8E370" geneId="Dtur_1672"/>
        <gene id="108" protId="B8DZ90" geneId="Dtur_0533"/>
        <gene id="110" protId="B8E0W1" geneId="eno"/>
        <gene id="112" protId="B8DZN5" geneId="Dtur_0683"/>
        <gene id="114" protId="B8E239" geneId="Dtur_1036"/>
        <gene id="117" protId="B8DZS2" geneId="Dtur_0720"/>
        <gene id="119" protId="B8E129" geneId="rsmA"/>
        <gene id="121" protId="B8DZJ0" geneId="Dtur_0638"/>
        <gene id="124" protId="B8E1D6" geneId="rplB"/>
        <gene id="126" protId="B8E0D9" geneId="pheS"/>
        <gene id="128" protId="B8E1F3" geneId="adk"/>
        <gene id="130" protId="B8E0K7" geneId="tuf"/>
        <gene id="132" protId="B8E123" geneId="argS"/>
        <gene id="134" protId="B8E2U0" geneId="gpsA"/>
        <gene id="136" protId="B8DYH7" geneId="dnaJ"/>
        <gene id="138" protId="B8E098" geneId="Dtur_1265"/>
        <gene id="140" protId="B8E305" geneId="Dtur_1227"/>
        <gene id="142" protId="B8E2F6" geneId="Dtur_1526"/>
        <gene id="144" protId="B8E0R4" geneId="Dtur_1813"/>
        <gene id="145" protId="B8DZ32" geneId="Dtur_0345"/>
        <gene id="147" protId="B8E096" geneId="gyrA"/>
        <gene id="149" protId="B8E2R2" geneId="tpiA"/>
        <gene id="151" protId="B8E1A9" geneId="groL"/>
        <gene id="156" protId="B8E1Q0" geneId="Dtur_0249"/>
        <gene id="157" protId="B8E380" geneId="Dtur_1682"/>
        <gene id="158" protId="B8E0W9" geneId="Dtur_1432"/>
        <gene id="159" protId="B8E1G3" geneId="Dtur_1011"/>
        <gene id="160" protId="B8E256" geneId="Dtur_1053"/>
        <gene id="162" protId="B8E1F0" geneId="rpsE"/>
        <gene id="164" protId="B8E1C1" geneId="hisS"/>
        <gene id="166" protId="B8E1Q8" geneId="Dtur_0257"/>
        <gene id="170" protId="B8E082" geneId="uvrB"/>
        <gene id="176" protId="B8DZE2" geneId="Dtur_0587"/>
        <gene id="178" protId="B8E0Y0" geneId="Dtur_1443"/>
        <gene id="180" protId="B8E2Q5" geneId="Dtur_1626"/>
        <gene id="182" protId="B8DZC8" geneId="Dtur_0572"/>
        <gene id="184" protId="B8E0X1" geneId="Dtur_1434"/>
        <gene id="186" protId="B8E1E3" geneId="rplN"/>
        <gene id="188" protId="B8E0D8" geneId="pheT"/>
        <gene id="190" protId="B8E2X7" geneId="Dtur_1198"/>
        <gene id="192" protId="B8E2P6" geneId="nnr"/>
        <gene id="194" protId="B8E0U1" geneId="Dtur_1404"/>
        <gene id="196" protId="B8E2Z1" geneId="truB"/>
        <gene id="198" protId="B8DYW4" geneId="Dtur_0264"/>
        <gene id="200" protId="B8E222" geneId="glmM"/>
        <gene id="201" protId="B8DYM3" geneId="Dtur_0067"/>
        <gene id="203" protId="B8E307" geneId="Dtur_1229"/>
        <gene id="205" protId="B8E2Q4" geneId="Dtur_1625"/>
        <gene id="207" protId="B8DZC7" geneId="Dtur_0571"/>
        <gene id="208" protId="B8DYP7" geneId="Dtur_0091"/>
        <gene id="211" protId="B8E1F7" geneId="rpsM"/>
        <gene id="213" protId="B8E029" geneId="dut"/>
        <gene id="215" protId="B8E1F2" geneId="secY"/>
        <gene id="217" protId="B8E1T6" geneId="Dtur_0415"/>
        <gene id="218" protId="B8E343" geneId="Dtur_1644"/>
        <gene id="219" protId="B8E1T2" geneId="Dtur_0411"/>
        <gene id="220" protId="B8E365" geneId="Dtur_1667"/>
        <gene id="221" protId="B8E2T2" geneId="Dtur_1153"/>
        <gene id="222" protId="B8DYQ1" geneId="Dtur_0095"/>
        <gene id="223" protId="B8DYZ1" geneId="Dtur_0295"/>
        <gene id="225" protId="B8E1F8" geneId="rpsK"/>
        <gene id="227" protId="B8E1C8" geneId="rpsL"/>
        <gene id="229" protId="B8E249" geneId="ppnK"/>
        <gene id="231" protId="B8E1C9" geneId="rpsG"/>
        <gene id="233" protId="B8E2G1" geneId="rnhB"/>
        <gene id="235" protId="B8E2U1" geneId="recA"/>
        <gene id="237" protId="B8E0S4" geneId="Dtur_1387"/>
        <gene id="239" protId="B8E357" geneId="Dtur_1659"/>
        <gene id="242" protId="B8DZY5" geneId="tmk"/>
        <gene id="244" protId="B8E1E5" geneId="rplE"/>
        <gene id="246" protId="B8E1W8" geneId="Dtur_0450"/>
        <gene id="248" protId="B8E2B5" geneId="Dtur_1113"/>
        <gene id="249" protId="B8DYX4" geneId="Dtur_0274"/>
        <gene id="251" protId="B8DZN6" geneId="Dtur_0684"/>
        <gene id="253" protId="B8E1B5" geneId="Dtur_0963"/>
        <gene id="255" protId="B8DYJ0" geneId="Dtur_0034"/>
        <gene id="257" protId="B8E2Y2" geneId="rpsB"/>
        <gene id="259" protId="B8DZR7" geneId="Dtur_0715"/>
        <gene id="261" protId="B8E0I5" geneId="Dtur_1356"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="D.turgidum" link="http://www.uniprot.org/taxonomy/515635"/>
    </notes>
  </species>
  <species name="Vittaforma corneae " NCBITaxId="993615">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="11" protId="L2GPX3" geneId="VICG_00263"/>
        <gene id="13" protId="L2GMV3" geneId="VICG_00789"/>
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        <gene id="21" protId="L2GME9" geneId="VICG_01166"/>
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        <gene id="24" protId="L2GL75" geneId="VICG_01366"/>
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        <gene id="102" protId="L2GNJ8" geneId="VICG_00567"/>
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        <gene id="125" protId="L2GLL8" geneId="VICG_01505"/>
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        <gene id="129" protId="L2GRD1" geneId="VICG_00202"/>
        <gene id="131" protId="L2GN49" geneId="VICG_01236"/>
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        <gene id="135" protId="L2GJD7" geneId="VICG_01952"/>
        <gene id="137" protId="L2GP65" geneId="VICG_00363"/>
        <gene id="139" protId="L2GMJ2" geneId="VICG_00947"/>
        <gene id="141" protId="L2GMF8" geneId="VICG_01176"/>
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        <gene id="169" protId="L2GJW3" geneId="VICG_01825"/>
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        <gene id="172" protId="L2GKX2" geneId="VICG_01824"/>
        <gene id="173" protId="L2GQ12" geneId="VICG_00004"/>
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        <gene id="177" protId="L2GPQ1" geneId="VICG_00584"/>
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        <gene id="181" protId="L2GNN8" geneId="VICG_00954"/>
        <gene id="183" protId="L2GP40" geneId="VICG_00498"/>
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        <gene id="204" protId="L2GM75" geneId="VICG_00963"/>
        <gene id="206" protId="L2GNM6" geneId="VICG_00597"/>
        <gene id="209" protId="L2GJ50" geneId="VICG_02048"/>
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        <gene id="212" protId="L2GKS5" geneId="VICG_01472"/>
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        <gene id="226" protId="L2GPP5" geneId="VICG_00682"/>
        <gene id="228" protId="L2GQU8" geneId="VICG_00002"/>
        <gene id="230" protId="L2GMQ1" geneId="VICG_00945"/>
        <gene id="232" protId="L2GPW2" geneId="VICG_00292"/>
        <gene id="234" protId="L2GP43" geneId="VICG_00685"/>
        <gene id="236" protId="L2GRG7" geneId="VICG_00242"/>
        <gene id="238" protId="L2GKN9" geneId="VICG_01783"/>
        <gene id="240" protId="L2GPR9" geneId="VICG_00151"/>
        <gene id="241" protId="L2GLA2" geneId="VICG_01359"/>
        <gene id="243" protId="L2GPD6" geneId="VICG_00805"/>
        <gene id="245" protId="L2GKZ3" geneId="VICG_01849"/>
        <gene id="247" protId="L2GPV4" geneId="VICG_00186"/>
        <gene id="250" protId="L2GJK1" geneId="VICG_01918"/>
        <gene id="252" protId="L2GQ68" geneId="VICG_00571"/>
        <gene id="254" protId="L2GKF7" geneId="VICG_01609"/>
        <gene id="256" protId="L2GN26" geneId="VICG_00871"/>
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        <gene id="260" protId="L2GK35" geneId="VICG_01953"/>
        <gene id="262" protId="L2GK81" geneId="VICG_01661"/>
        <gene id="263" protId="L2GQ10" geneId="VICG_00511"/>
        <gene id="264" protId="L2GQE9" geneId="VICG_00164"/>
        <gene id="265" protId="L2GNC2" geneId="VICG_00497"/>
        <gene id="266" protId="L2GM03" geneId="VICG_01060"/>
        <gene id="267" protId="L2GLS9" geneId="VICG_01565"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="V.corneae" link="http://www.uniprot.org/taxonomy/993615"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="614"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="519"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="500"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="0.213"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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