<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="201" inparalogs="491"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Dictyoglomus turgidum " NCBITaxId="515635">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
        <gene id="1" protId="B8E0N4" geneId="carB"/>
        <gene id="3" protId="B8E0W6" geneId="ileS"/>
        <gene id="5" protId="B8E152" geneId="Dtur_0899"/>
        <gene id="6" protId="B8E117" geneId="Dtur_1480"/>
        <gene id="8" protId="B8E0E7" geneId="Dtur_1318"/>
        <gene id="10" protId="B8E292" geneId="valS"/>
        <gene id="12" protId="B8DYH6" geneId="dnaK"/>
        <gene id="14" protId="B8E1A9" geneId="groL"/>
        <gene id="17" protId="B8E137" geneId="atpB"/>
        <gene id="19" protId="B8E0W5" geneId="hppA"/>
        <gene id="21" protId="B8E145" geneId="Dtur_0892"/>
        <gene id="23" protId="B8DYT0" geneId="atpD"/>
        <gene id="25" protId="B8E336" geneId="fhs"/>
        <gene id="27" protId="B8E228" geneId="thrS"/>
        <gene id="29" protId="B8E1L6" geneId="Dtur_0212"/>
        <gene id="32" protId="B8E3E6" geneId="Dtur_1748"/>
        <gene id="34" protId="B8E028" geneId="proS"/>
        <gene id="36" protId="B8DZU8" geneId="guaB"/>
        <gene id="38" protId="B8E039" geneId="glpK"/>
        <gene id="40" protId="B8E0F4" geneId="pyrG"/>
        <gene id="42" protId="B8E0W1" geneId="eno"/>
        <gene id="44" protId="B8E2A9" geneId="lepA"/>
        <gene id="46" protId="B8E0K7" geneId="tuf"/>
        <gene id="48" protId="B8E226" geneId="alaS"/>
        <gene id="50" protId="B8E242" geneId="Dtur_1039"/>
        <gene id="52" protId="B8E1Q7" geneId="metG"/>
        <gene id="54" protId="B8E066" geneId="ftsH"/>
        <gene id="56" protId="B8E1H7" geneId="Dtur_0171"/>
        <gene id="57" protId="B8DZK2" geneId="Dtur_0650"/>
        <gene id="59" protId="B8DYT2" geneId="atpA"/>
        <gene id="61" protId="B8E223" geneId="glmS"/>
        <gene id="63" protId="B8E008" geneId="glyA"/>
        <gene id="65" protId="B8E2J2" geneId="Dtur_1562"/>
        <gene id="67" protId="B8DZS1" geneId="iscS"/>
        <gene id="69" protId="B8E030" geneId="fusA"/>
        <gene id="71" protId="B8E384" geneId="Dtur_1686"/>
        <gene id="72" protId="B8E172" geneId="Dtur_0919"/>
        <gene id="73" protId="B8DZB6" geneId="Dtur_0559"/>
        <gene id="75" protId="B8DYI6" geneId="Dtur_0030"/>
        <gene id="77" protId="B8E0P8" geneId="Dtur_1796"/>
        <gene id="79" protId="B8DZ75" geneId="Dtur_0515"/>
        <gene id="81" protId="B8E0I1" geneId="Dtur_1352"/>
        <gene id="83" protId="B8E2D3" geneId="pgk"/>
        <gene id="85" protId="B8E2H3" geneId="guaA"/>
        <gene id="87" protId="B8E158" geneId="Dtur_0905"/>
        <gene id="89" protId="B8E1C7" geneId="rpoC"/>
        <gene id="92" protId="B8E0D2" geneId="proA"/>
        <gene id="94" protId="B8DYM2" geneId="Dtur_0066"/>
        <gene id="97" protId="B8E1Z9" geneId="Dtur_0484"/>
        <gene id="99" protId="B8E2N5" geneId="tgt"/>
        <gene id="101" protId="B8E023" geneId="Dtur_0825"/>
        <gene id="102" protId="B8DZJ3" geneId="Dtur_0641"/>
        <gene id="103" protId="B8DZM6" geneId="Dtur_0674"/>
        <gene id="104" protId="B8DZC5" geneId="Dtur_0568"/>
        <gene id="106" protId="B8E1P8" geneId="Dtur_0247"/>
        <gene id="107" protId="B8DZJ4" geneId="Dtur_0642"/>
        <gene id="108" protId="B8DZC6" geneId="Dtur_0569"/>
        <gene id="109" protId="B8DZM5" geneId="Dtur_0673"/>
        <gene id="111" protId="B8E279" geneId="mutS"/>
        <gene id="113" protId="B8E184" geneId="asnS"/>
        <gene id="115" protId="B8DZV2" geneId="Dtur_0753"/>
        <gene id="117" protId="B8E198" geneId="Dtur_0945"/>
        <gene id="119" protId="B8DZX8" geneId="lig"/>
        <gene id="121" protId="B8DYL0" geneId="Dtur_0054"/>
        <gene id="124" protId="B8DZY1" geneId="prs"/>
        <gene id="128" protId="B8E1C6" geneId="rpoB"/>
        <gene id="131" protId="B8E2G8" geneId="ffh"/>
        <gene id="133" protId="B8DYH7" geneId="dnaJ"/>
        <gene id="135" protId="B8DZQ1" geneId="Dtur_0699"/>
        <gene id="137" protId="B8E2Y7" geneId="infB"/>
        <gene id="139" protId="B8E0S0" geneId="Dtur_1383"/>
        <gene id="141" protId="B8E0B2" geneId="obg"/>
        <gene id="143" protId="B8E0R9" geneId="serS"/>
        <gene id="145" protId="B8E391" geneId="cysS"/>
        <gene id="147" protId="B8E033" geneId="Dtur_0835"/>
        <gene id="150" protId="B8DZ90" geneId="Dtur_0533"/>
        <gene id="152" protId="B8DZY4" geneId="Dtur_0786"/>
        <gene id="154" protId="B8E1A0" geneId="smc"/>
        <gene id="156" protId="B8E2P6" geneId="nnr"/>
        <gene id="158" protId="B8DZ22" geneId="Dtur_0334"/>
        <gene id="159" protId="B8E331" geneId="Dtur_1632"/>
        <gene id="161" protId="B8DZS0" geneId="Dtur_0718"/>
        <gene id="163" protId="B8E003" geneId="prfA"/>
        <gene id="164" protId="B8E0U6" geneId="Dtur_1409"/>
        <gene id="166" protId="B8E1F3" geneId="adk"/>
        <gene id="168" protId="B8E278" geneId="miaB"/>
        <gene id="169" protId="B8E101" geneId="rimO"/>
        <gene id="170" protId="B8E0G0" geneId="Dtur_1331"/>
        <gene id="172" protId="B8E0F1" geneId="deoC"/>
        <gene id="174" protId="B8E005" geneId="Dtur_0807"/>
        <gene id="176" protId="B8E291" geneId="clpX"/>
        <gene id="179" protId="B8E335" geneId="folD"/>
        <gene id="181" protId="B8E1I5" geneId="Dtur_0181"/>
        <gene id="183" protId="B8E182" geneId="mtnA"/>
        <gene id="185" protId="B8E2F6" geneId="Dtur_1526"/>
        <gene id="187" protId="B8E2T2" geneId="Dtur_1153"/>
        <gene id="188" protId="B8E343" geneId="Dtur_1644"/>
        <gene id="189" protId="B8E365" geneId="Dtur_1667"/>
        <gene id="190" protId="B8E1T2" geneId="Dtur_0411"/>
        <gene id="191" protId="B8E1T6" geneId="Dtur_0415"/>
        <gene id="197" protId="B8E196" geneId="Dtur_0943"/>
        <gene id="198" protId="B8E1U2" geneId="Dtur_0422"/>
        <gene id="200" protId="B8E2K4" geneId="pyrC"/>
        <gene id="203" protId="B8E2E5" geneId="gcvT"/>
        <gene id="205" protId="B8E280" geneId="mutL"/>
        <gene id="207" protId="B8E0X1" geneId="Dtur_1434"/>
        <gene id="209" protId="B8E181" geneId="Dtur_0928"/>
        <gene id="211" protId="B8DYG6" geneId="Dtur_0007"/>
        <gene id="213" protId="B8E0X4" geneId="Dtur_1437"/>
        <gene id="215" protId="B8E0D3" geneId="Dtur_1304"/>
        <gene id="217" protId="B8E2K5" geneId="pyrB"/>
        <gene id="219" protId="B8DZU4" geneId="Dtur_0745"/>
        <gene id="220" protId="B8E0T4" geneId="Dtur_1397"/>
        <gene id="222" protId="B8E2E7" geneId="gcvPA"/>
        <gene id="224" protId="B8E1B4" geneId="gcp"/>
        <gene id="226" protId="B8E1H5" geneId="Dtur_0169"/>
        <gene id="228" protId="B8E1F4" geneId="Dtur_1002"/>
        <gene id="230" protId="B8E390" geneId="Dtur_1692"/>
        <gene id="231" protId="B8DYJ5" geneId="Dtur_0039"/>
        <gene id="234" protId="B8E1Z0" geneId="Dtur_0473"/>
        <gene id="236" protId="B8E2T8" geneId="der"/>
        <gene id="238" protId="B8DYX9" geneId="Dtur_0280"/>
        <gene id="241" protId="B8E0Z7" geneId="speE"/>
        <gene id="243" protId="B8E1B8" geneId="purA"/>
        <gene id="245" protId="B8DYU0" geneId="Dtur_0141"/>
        <gene id="247" protId="B8E0S2" geneId="pfkA"/>
        <gene id="249" protId="B8DYI0" geneId="Dtur_0021"/>
        <gene id="251" protId="B8DZI5" geneId="Dtur_0630"/>
        <gene id="253" protId="B8E131" geneId="Dtur_1494"/>
        <gene id="255" protId="B8E1I7" geneId="Dtur_0183"/>
        <gene id="257" protId="B8DZC8" geneId="Dtur_0572"/>
        <gene id="259" protId="B8E098" geneId="Dtur_1265"/>
        <gene id="262" protId="B8E001" geneId="tdk"/>
        <gene id="264" protId="B8DYS7" geneId="Dtur_0127"/>
        <gene id="266" protId="B8E370" geneId="Dtur_1672"/>
        <gene id="268" protId="B8E151" geneId="Dtur_0898"/>
        <gene id="271" protId="B8E0F5" geneId="Dtur_1326"/>
        <gene id="275" protId="B8E2X4" geneId="Dtur_1195"/>
        <gene id="278" protId="B8DZN5" geneId="Dtur_0683"/>
        <gene id="280" protId="B8E009" geneId="upp"/>
        <gene id="282" protId="B8E0J7" geneId="Dtur_1368"/>
        <gene id="284" protId="B8DZJ0" geneId="Dtur_0638"/>
        <gene id="287" protId="B8DZX0" geneId="nfi"/>
        <gene id="289" protId="B8E2N0" geneId="Dtur_1601"/>
        <gene id="291" protId="B8E123" geneId="argS"/>
        <gene id="293" protId="B8E281" geneId="miaA"/>
        <gene id="295" protId="B8E081" geneId="coaE"/>
        <gene id="297" protId="B8E1S5" geneId="Dtur_0404"/>
        <gene id="299" protId="B8E2X8" geneId="Dtur_1199"/>
        <gene id="301" protId="B8E2K2" geneId="pyrD"/>
        <gene id="303" protId="B8E2D6" geneId="Dtur_1506"/>
        <gene id="306" protId="B8E2G1" geneId="rnhB"/>
        <gene id="308" protId="B8E1M7" geneId="Dtur_0223"/>
        <gene id="310" protId="B8E0Y3" geneId="rsmI"/>
        <gene id="312" protId="B8E316" geneId="Dtur_1238"/>
        <gene id="314" protId="B8E0T1" geneId="pcm"/>
        <gene id="316" protId="B8DZP1" geneId="mnmA"/>
        <gene id="318" protId="B8E1B9" geneId="Dtur_0967"/>
        <gene id="321" protId="B8DZ41" geneId="Dtur_0356"/>
        <gene id="323" protId="B8E1Q8" geneId="Dtur_0257"/>
        <gene id="327" protId="B8E0A6" geneId="gltX"/>
        <gene id="330" protId="B8E1C1" geneId="hisS"/>
        <gene id="332" protId="B8E183" geneId="mtaD"/>
        <gene id="335" protId="B8E2M9" geneId="Dtur_1600"/>
        <gene id="338" protId="B8E135" geneId="Dtur_1498"/>
        <gene id="340" protId="B8E0W0" geneId="Dtur_1423"/>
        <gene id="342" protId="B8DZF5" geneId="Dtur_0600"/>
        <gene id="344" protId="B8E129" geneId="rsmA"/>
        <gene id="346" protId="B8E0D9" geneId="pheS"/>
        <gene id="348" protId="B8E2Z4" geneId="Dtur_1215"/>
        <gene id="350" protId="B8E2S6" geneId="Dtur_1147"/>
        <gene id="353" protId="B8E0R4" geneId="Dtur_1813"/>
        <gene id="354" protId="B8DZ32" geneId="Dtur_0345"/>
        <gene id="356" protId="B8E2Z3" geneId="Dtur_1214"/>
        <gene id="358" protId="B8E118" geneId="Dtur_1481"/>
        <gene id="360" protId="B8E282" geneId="Dtur_1080"/>
        <gene id="365" protId="B8DYJ6" geneId="Dtur_0040"/>
        <gene id="367" protId="B8DZW1" geneId="Dtur_0762"/>
        <gene id="372" protId="B8E169" geneId="Dtur_0916"/>
        <gene id="373" protId="B8DZB5" geneId="Dtur_0558"/>
        <gene id="374" protId="B8E385" geneId="Dtur_1687"/>
        <gene id="376" protId="B8E0H7" geneId="Dtur_1348"/>
        <gene id="378" protId="B8E1F0" geneId="rpsE"/>
        <gene id="380" protId="B8E088" geneId="rsmH"/>
        <gene id="382" protId="B8E026" geneId="Dtur_0828"/>
        <gene id="383" protId="B8E188" geneId="Dtur_0935"/>
        <gene id="384" protId="B8DZ79" geneId="Dtur_0519"/>
        <gene id="385" protId="B8DYQ1" geneId="Dtur_0095"/>
        <gene id="386" protId="B8DYL7" geneId="Dtur_0061"/>
        <gene id="387" protId="B8E189" geneId="Dtur_0936"/>
        <gene id="388" protId="B8E1Z4" geneId="Dtur_0477"/>
        <gene id="389" protId="B8DYZ1" geneId="Dtur_0295"/>
        <gene id="390" protId="B8E1G2" geneId="Dtur_1010"/>
        <gene id="394" protId="B8E208" geneId="Dtur_0498"/>
        <gene id="395" protId="B8E1U5" geneId="Dtur_0425"/>
        <gene id="396" protId="B8E344" geneId="Dtur_1645"/>
        <gene id="398" protId="B8E0A8" geneId="Dtur_1275"/>
        <gene id="400" protId="B8E1D6" geneId="rplB"/>
        <gene id="402" protId="B8E1G6" geneId="rplM"/>
        <gene id="404" protId="B8E2Q5" geneId="Dtur_1626"/>
        <gene id="406" protId="B8E2P1" geneId="ruvB"/>
        <gene id="409" protId="B8DZ37" geneId="Dtur_0351"/>
        <gene id="411" protId="B8E309" geneId="Dtur_1231"/>
        <gene id="414" protId="B8E0W3" geneId="Dtur_1426"/>
        <gene id="416" protId="B8E0U2" geneId="Dtur_1405"/>
        <gene id="418" protId="B8E1G5" geneId="truA"/>
        <gene id="420" protId="B8DZW2" geneId="lipB"/>
        <gene id="422" protId="B8DZQ2" geneId="ldh"/>
        <gene id="426" protId="B8E0L2" geneId="Dtur_1760"/>
        <gene id="428" protId="B8E0Y0" geneId="Dtur_1443"/>
        <gene id="430" protId="B8E307" geneId="Dtur_1229"/>
        <gene id="432" protId="B8E1I4" geneId="Dtur_0180"/>
        <gene id="434" protId="B8E2U1" geneId="recA"/>
        <gene id="437" protId="B8E2D9" geneId="Dtur_1509"/>
        <gene id="439" protId="B8E136" geneId="Dtur_1499"/>
        <gene id="441" protId="B8E2T6" geneId="Dtur_1157"/>
        <gene id="442" protId="B8E2T5" geneId="Dtur_1156"/>
        <gene id="444" protId="B8E1C4" geneId="Dtur_0972"/>
        <gene id="447" protId="B8DYH5" geneId="grpE"/>
        <gene id="449" protId="B8E2X7" geneId="Dtur_1198"/>
        <gene id="451" protId="B8E0V1" geneId="Dtur_1414"/>
        <gene id="453" protId="B8E3B0" geneId="Dtur_1712"/>
        <gene id="455" protId="B8DYJ7" geneId="Dtur_0041"/>
        <gene id="458" protId="B8DYS4" geneId="Dtur_0124"/>
        <gene id="460" protId="B8E0R2" geneId="Dtur_1811"/>
        <gene id="461" protId="B8DZB1" geneId="Dtur_0554"/>
        <gene id="462" protId="B8DZN6" geneId="Dtur_0684"/>
        <gene id="465" protId="B8DYM3" geneId="Dtur_0067"/>
        <gene id="466" protId="B8E0W4" geneId="Dtur_1427"/>
        <gene id="467" protId="B8E222" geneId="glmM"/>
        <gene id="469" protId="B8DZZ3" geneId="Dtur_0795"/>
        <gene id="471" protId="B8E0F2" geneId="era"/>
        <gene id="473" protId="B8E1D9" geneId="rpsC"/>
        <gene id="476" protId="B8DZ66" geneId="Dtur_0388"/>
        <gene id="477" protId="B8E1W1" geneId="Dtur_0442"/>
        <gene id="480" protId="B8DZ29" geneId="Dtur_0341"/>
        <gene id="482" protId="B8DYM9" geneId="Dtur_0073"/>
        <gene id="484" protId="B8E0F7" geneId="ybeY"/>
        <gene id="486" protId="B8DZY5" geneId="tmk"/>
        <gene id="488" protId="B8DYL2" geneId="Dtur_0056"/>
        <gene id="490" protId="B8E004" geneId="prmC"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="D.turgidum" link="http://www.uniprot.org/taxonomy/515635"/>
    </notes>
  </species>
  <species name="Trypanosoma cruzi " NCBITaxId="5693">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="4" protId="K4E228" geneId="TCSYLVIO_004705"/>
        <gene id="7" protId="K4EBZ4" geneId="TCSYLVIO_000839"/>
        <gene id="9" protId="K4E9B7" geneId="TCSYLVIO_001633"/>
        <gene id="11" protId="K4E5D5" geneId="TCSYLVIO_003345"/>
        <gene id="13" protId="K4E4W4" geneId="TCSYLVIO_003281"/>
        <gene id="15" protId="K4E047" geneId="TCSYLVIO_004969"/>
        <gene id="16" protId="K4E2H3" geneId="TCSYLVIO_004120"/>
        <gene id="18" protId="K4E768" geneId="TCSYLVIO_002668"/>
        <gene id="20" protId="K4E6E7" geneId="TCSYLVIO_002936"/>
        <gene id="22" protId="K4DJX8" geneId="TCSYLVIO_010545"/>
        <gene id="24" protId="K4DY32" geneId="TCSYLVIO_005914"/>
        <gene id="26" protId="K4E629" geneId="TCSYLVIO_003291"/>
        <gene id="28" protId="K4DU79" geneId="TCSYLVIO_007511"/>
        <gene id="30" protId="K4DUK8" geneId="TCSYLVIO_007396"/>
        <gene id="31" protId="K4DIS2" geneId="TCSYLVIO_010946"/>
        <gene id="33" protId="K4DM38" geneId="TCSYLVIO_009925"/>
        <gene id="35" protId="K4DWJ7" geneId="TCSYLVIO_006246"/>
        <gene id="37" protId="K4DPJ9" geneId="TCSYLVIO_009031"/>
        <gene id="39" protId="K4DXZ2" geneId="TCSYLVIO_005837"/>
        <gene id="41" protId="K4DTM2" geneId="TCSYLVIO_007288"/>
        <gene id="43" protId="K4E1A8" geneId="TCSYLVIO_004545"/>
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        <gene id="84" protId="K4E587" geneId="TCSYLVIO_003370"/>
        <gene id="86" protId="K4EBX4" geneId="TCSYLVIO_001147"/>
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        <gene id="93" protId="K4E0F1" geneId="TCSYLVIO_005298"/>
        <gene id="95" protId="K4DQX8" geneId="TCSYLVIO_008414"/>
        <gene id="96" protId="K4DQT8" geneId="TCSYLVIO_008413"/>
        <gene id="98" protId="K4E0R1" geneId="TCSYLVIO_004949"/>
        <gene id="100" protId="K4E509" geneId="TCSYLVIO_003222"/>
        <gene id="105" protId="K4DUI8" geneId="TCSYLVIO_007426"/>
        <gene id="110" protId="K4E0E8" geneId="TCSYLVIO_005293"/>
        <gene id="112" protId="K4E008" geneId="TCSYLVIO_004980"/>
        <gene id="114" protId="K4E3K3" geneId="TCSYLVIO_003867"/>
        <gene id="116" protId="K4EA42" geneId="TCSYLVIO_001400"/>
        <gene id="118" protId="K4ED08" geneId="TCSYLVIO_000393"/>
        <gene id="120" protId="K4E5V7" geneId="TCSYLVIO_003375"/>
        <gene id="122" protId="K4E1Y8" geneId="TCSYLVIO_004398"/>
        <gene id="123" protId="K4E1X6" geneId="TCSYLVIO_004400"/>
        <gene id="125" protId="K4DYU6" geneId="TCSYLVIO_005617"/>
        <gene id="126" protId="K4E0Q6" geneId="TCSYLVIO_004731"/>
        <gene id="127" protId="K4DJF6" geneId="TCSYLVIO_010787"/>
        <gene id="129" protId="K4DU07" geneId="TCSYLVIO_007229"/>
        <gene id="130" protId="K4E6Y0" geneId="TCSYLVIO_002970"/>
        <gene id="132" protId="K4EAX5" geneId="TCSYLVIO_001505"/>
        <gene id="134" protId="K4DTU5" geneId="TCSYLVIO_007186"/>
        <gene id="136" protId="K4EAT6" geneId="TCSYLVIO_001291"/>
        <gene id="138" protId="K4E9F4" geneId="TCSYLVIO_001768"/>
        <gene id="140" protId="K4E6U8" geneId="TCSYLVIO_002561"/>
        <gene id="142" protId="K4E045" geneId="TCSYLVIO_005040"/>
        <gene id="144" protId="K4EAD1" geneId="TCSYLVIO_001717"/>
        <gene id="146" protId="K4DUH4" geneId="TCSYLVIO_006977"/>
        <gene id="148" protId="K4E9R2" geneId="TCSYLVIO_001723"/>
        <gene id="149" protId="K4E277" geneId="TCSYLVIO_004328"/>
        <gene id="151" protId="K4E7A1" geneId="TCSYLVIO_002365"/>
        <gene id="153" protId="K4E4Z7" geneId="TCSYLVIO_003242"/>
        <gene id="155" protId="K4DZ11" geneId="TCSYLVIO_005796"/>
        <gene id="157" protId="K4DJQ7" geneId="TCSYLVIO_010611"/>
        <gene id="160" protId="K4DWK0" geneId="TCSYLVIO_006201"/>
        <gene id="162" protId="K4DZY5" geneId="TCSYLVIO_005030"/>
        <gene id="165" protId="K4DX37" geneId="TCSYLVIO_006272"/>
        <gene id="167" protId="K4E1Y3" geneId="TCSYLVIO_004393"/>
        <gene id="171" protId="K4E4U5" geneId="TCSYLVIO_003258"/>
        <gene id="173" protId="K4E9X0" geneId="TCSYLVIO_001881"/>
        <gene id="175" protId="K4E6L3" geneId="TCSYLVIO_002651"/>
        <gene id="177" protId="K4DW31" geneId="TCSYLVIO_006477"/>
        <gene id="178" protId="K4E7U0" geneId="TCSYLVIO_002410"/>
        <gene id="180" protId="K4E8J2" geneId="TCSYLVIO_002375"/>
        <gene id="182" protId="K4DY72" geneId="TCSYLVIO_005634"/>
        <gene id="184" protId="K4DRY6" geneId="TCSYLVIO_008325"/>
        <gene id="186" protId="K4DUU1" geneId="TCSYLVIO_006869"/>
        <gene id="192" protId="K4E487" geneId="TCSYLVIO_003469"/>
        <gene id="193" protId="K4E9I0" geneId="TCSYLVIO_001617"/>
        <gene id="194" protId="K4DVB5" geneId="TCSYLVIO_007093"/>
        <gene id="195" protId="K4DJH5" geneId="TCSYLVIO_010679"/>
        <gene id="196" protId="K4E2B3" geneId="TCSYLVIO_004186"/>
        <gene id="199" protId="K4DL86" geneId="TCSYLVIO_010066"/>
        <gene id="201" protId="K4EAS5" geneId="TCSYLVIO_001115"/>
        <gene id="202" protId="K4DQS6" geneId="TCSYLVIO_008471"/>
        <gene id="204" protId="K4DNF4" geneId="TCSYLVIO_009226"/>
        <gene id="206" protId="K4EA62" geneId="TCSYLVIO_001333"/>
        <gene id="208" protId="K4EBN7" geneId="TCSYLVIO_001041"/>
        <gene id="210" protId="K4E900" geneId="TCSYLVIO_001974"/>
        <gene id="212" protId="K4DU73" geneId="TCSYLVIO_007516"/>
        <gene id="214" protId="K4E6B6" geneId="TCSYLVIO_002967"/>
        <gene id="216" protId="K4EAX2" geneId="TCSYLVIO_001247"/>
        <gene id="218" protId="K4EBB2" geneId="TCSYLVIO_001183"/>
        <gene id="221" protId="K4DVT2" geneId="TCSYLVIO_006511"/>
        <gene id="223" protId="K4DJT7" geneId="TCSYLVIO_010584"/>
        <gene id="225" protId="K4DPC4" geneId="TCSYLVIO_009104"/>
        <gene id="227" protId="K4DRA8" geneId="TCSYLVIO_008241"/>
        <gene id="229" protId="K4DX17" geneId="TCSYLVIO_006039"/>
        <gene id="232" protId="K4E3B2" geneId="TCSYLVIO_003911"/>
        <gene id="233" protId="K4DML9" geneId="TCSYLVIO_009589"/>
        <gene id="235" protId="K4E3F1" geneId="TCSYLVIO_003775"/>
        <gene id="237" protId="K4E790" geneId="TCSYLVIO_002378"/>
        <gene id="239" protId="K4E602" geneId="TCSYLVIO_002874"/>
        <gene id="240" protId="K4DLK2" geneId="TCSYLVIO_009978"/>
        <gene id="242" protId="K4DV45" geneId="TCSYLVIO_007160"/>
        <gene id="244" protId="K4E5I9" geneId="TCSYLVIO_003035"/>
        <gene id="246" protId="K4DRS8" geneId="TCSYLVIO_007977"/>
        <gene id="248" protId="K4E1M0" geneId="TCSYLVIO_004417"/>
        <gene id="250" protId="K4E1F6" geneId="TCSYLVIO_004722"/>
        <gene id="252" protId="K4EE96" geneId="TCSYLVIO_000028"/>
        <gene id="254" protId="K4EA12" geneId="TCSYLVIO_001843"/>
        <gene id="256" protId="K4EAC1" geneId="TCSYLVIO_001301"/>
        <gene id="258" protId="O79469" geneId="mpx"/>
        <gene id="260" protId="K4ED97" geneId="TCSYLVIO_000468"/>
        <gene id="261" protId="K4ECR6" geneId="TCSYLVIO_000423"/>
        <gene id="263" protId="K4DNP7" geneId="TCSYLVIO_009141"/>
        <gene id="265" protId="K4E0H3" geneId="TCSYLVIO_004858"/>
        <gene id="267" protId="K4E0Y4" geneId="TCSYLVIO_004657"/>
        <gene id="269" protId="K4DQ05" geneId="TCSYLVIO_008887"/>
        <gene id="270" protId="K4DU71" geneId="TCSYLVIO_007080"/>
        <gene id="272" protId="K4E3M6" geneId="TCSYLVIO_003843"/>
        <gene id="273" protId="K4DWU1" geneId="TCSYLVIO_006146"/>
        <gene id="274" protId="K4DX15" geneId="TCSYLVIO_006145"/>
        <gene id="276" protId="K4DXJ9" geneId="TCSYLVIO_005867"/>
        <gene id="277" protId="K4DY39" geneId="TCSYLVIO_005784"/>
        <gene id="279" protId="K4DVX8" geneId="TCSYLVIO_006466"/>
        <gene id="281" protId="K4E368" geneId="TCSYLVIO_003952"/>
        <gene id="283" protId="K4E4R7" geneId="TCSYLVIO_003339"/>
        <gene id="285" protId="K4DY76" geneId="TCSYLVIO_005639"/>
        <gene id="286" protId="K4E0K3" geneId="TCSYLVIO_005006"/>
        <gene id="288" protId="K4E065" geneId="TCSYLVIO_005013"/>
        <gene id="290" protId="K4E7S0" geneId="TCSYLVIO_002664"/>
        <gene id="292" protId="K4DZT5" geneId="TCSYLVIO_005509"/>
        <gene id="294" protId="K4E212" geneId="TCSYLVIO_004265"/>
        <gene id="296" protId="K4E8Y9" geneId="TCSYLVIO_001888"/>
        <gene id="298" protId="K4EA11" geneId="TCSYLVIO_001386"/>
        <gene id="300" protId="K4E8I3" geneId="TCSYLVIO_001926"/>
        <gene id="302" protId="K4EBU2" geneId="TCSYLVIO_001184"/>
        <gene id="304" protId="K4E293" geneId="TCSYLVIO_004209"/>
        <gene id="305" protId="K4EDC9" geneId="TCSYLVIO_000218"/>
        <gene id="307" protId="K4DUI3" geneId="TCSYLVIO_007435"/>
        <gene id="309" protId="K4DLZ1" geneId="TCSYLVIO_009923"/>
        <gene id="311" protId="K4DY19" geneId="TCSYLVIO_005812"/>
        <gene id="313" protId="K4EDS3" geneId="TCSYLVIO_000216"/>
        <gene id="315" protId="K4E2B2" geneId="TCSYLVIO_004614"/>
        <gene id="317" protId="K4DM93" geneId="TCSYLVIO_009813"/>
        <gene id="319" protId="K4E9P4" geneId="TCSYLVIO_001501"/>
        <gene id="320" protId="K4EAY5" geneId="TCSYLVIO_001500"/>
        <gene id="322" protId="K4E1J9" geneId="TCSYLVIO_004672"/>
        <gene id="324" protId="K4E4V2" geneId="TCSYLVIO_003293"/>
        <gene id="325" protId="K4DXS1" geneId="TCSYLVIO_005819"/>
        <gene id="326" protId="K4DNG9" geneId="TCSYLVIO_009214"/>
        <gene id="328" protId="K4E4Q3" geneId="TCSYLVIO_003355"/>
        <gene id="329" protId="K4DUA1" geneId="TCSYLVIO_007030"/>
        <gene id="331" protId="K4E5W2" geneId="TCSYLVIO_003126"/>
        <gene id="333" protId="K4DQM4" geneId="TCSYLVIO_008464"/>
        <gene id="334" protId="K4DTI7" geneId="TCSYLVIO_007737"/>
        <gene id="336" protId="K4DJT0" geneId="TCSYLVIO_010588"/>
        <gene id="337" protId="K4DK04" geneId="TCSYLVIO_010589"/>
        <gene id="339" protId="K4DT16" geneId="TCSYLVIO_007504"/>
        <gene id="341" protId="K4DU00" geneId="TCSYLVIO_007148"/>
        <gene id="343" protId="K4E5P4" geneId="TCSYLVIO_002943"/>
        <gene id="345" protId="K4E5E6" geneId="TCSYLVIO_003077"/>
        <gene id="347" protId="K4E2G9" geneId="TCSYLVIO_004213"/>
        <gene id="349" protId="K4E697" geneId="TCSYLVIO_002878"/>
        <gene id="351" protId="K4DSZ5" geneId="TCSYLVIO_007508"/>
        <gene id="352" protId="K4E4D6" geneId="TCSYLVIO_003423"/>
        <gene id="355" protId="K4E4Y7" geneId="TCSYLVIO_003199"/>
        <gene id="357" protId="K4DRA1" geneId="TCSYLVIO_008176"/>
        <gene id="359" protId="K4DUF3" geneId="TCSYLVIO_007077"/>
        <gene id="361" protId="K4DZX0" geneId="TCSYLVIO_005015"/>
        <gene id="362" protId="K4DU56" geneId="TCSYLVIO_007531"/>
        <gene id="363" protId="K4DZN8" geneId="TCSYLVIO_005122"/>
        <gene id="364" protId="K4EBY9" geneId="TCSYLVIO_000769"/>
        <gene id="366" protId="K4DR99" geneId="TCSYLVIO_008244"/>
        <gene id="368" protId="K4DYG5" geneId="TCSYLVIO_005792"/>
        <gene id="369" protId="K4DPE7" geneId="TCSYLVIO_008917"/>
        <gene id="370" protId="K4DXR2" geneId="TCSYLVIO_005791"/>
        <gene id="371" protId="K4DWM6" geneId="TCSYLVIO_006300"/>
        <gene id="375" protId="K4DNZ2" geneId="TCSYLVIO_009108"/>
        <gene id="377" protId="K4DNS4" geneId="TCSYLVIO_009115"/>
        <gene id="379" protId="K4DWZ6" geneId="TCSYLVIO_006088"/>
        <gene id="381" protId="K4EDV4" geneId="TCSYLVIO_000176"/>
        <gene id="391" protId="K4DT46" geneId="TCSYLVIO_007922"/>
        <gene id="392" protId="K4DUS3" geneId="TCSYLVIO_007078"/>
        <gene id="393" protId="K4E123" geneId="TCSYLVIO_004627"/>
        <gene id="397" protId="K4DSN3" geneId="TCSYLVIO_007613"/>
        <gene id="399" protId="D9YN59" geneId="SPPS"/>
        <gene id="401" protId="K4DJX1" geneId="TCSYLVIO_010548"/>
        <gene id="403" protId="K4E3V5" geneId="TCSYLVIO_003743"/>
        <gene id="405" protId="K4E6S3" geneId="TCSYLVIO_002534"/>
        <gene id="407" protId="K4E3I5" geneId="TCSYLVIO_003768"/>
        <gene id="408" protId="K4E404" geneId="TCSYLVIO_003846"/>
        <gene id="410" protId="K4E3V8" geneId="TCSYLVIO_003623"/>
        <gene id="412" protId="K4E7Z4" geneId="TCSYLVIO_002576"/>
        <gene id="413" protId="K4E928" geneId="TCSYLVIO_001746"/>
        <gene id="415" protId="K4EAY8" geneId="TCSYLVIO_001053"/>
        <gene id="417" protId="K4DQV7" geneId="TCSYLVIO_008388"/>
        <gene id="419" protId="K4E7Z0" geneId="TCSYLVIO_002366"/>
        <gene id="421" protId="K4DNZ7" geneId="TCSYLVIO_009197"/>
        <gene id="423" protId="O61084" geneId="TCSYLVIO_006026"/>
        <gene id="424" protId="K4E1P3" geneId="TCSYLVIO_004390"/>
        <gene id="425" protId="K4E2D9" geneId="TCSYLVIO_004391"/>
        <gene id="427" protId="K4DU32" geneId="TCSYLVIO_007097"/>
        <gene id="429" protId="K4E0J2" geneId="TCSYLVIO_005007"/>
        <gene id="431" protId="K4DLM2" geneId="TCSYLVIO_009958"/>
        <gene id="433" protId="K4E9B6" geneId="TCSYLVIO_001811"/>
        <gene id="435" protId="K4DY22" geneId="TCSYLVIO_005674"/>
        <gene id="436" protId="K4E7G9" geneId="TCSYLVIO_002535"/>
        <gene id="438" protId="K4DLT0" geneId="TCSYLVIO_010007"/>
        <gene id="440" protId="K4E0Y2" geneId="TCSYLVIO_005104"/>
        <gene id="443" protId="K4E3R6" geneId="TCSYLVIO_004108"/>
        <gene id="445" protId="K4DYM9" geneId="TCSYLVIO_005492"/>
        <gene id="446" protId="K4DX25" geneId="TCSYLVIO_006481"/>
        <gene id="448" protId="K4E538" geneId="TCSYLVIO_003139"/>
        <gene id="450" protId="K4DRZ8" geneId="TCSYLVIO_000952"/>
        <gene id="452" protId="K4DXN0" geneId="TCSYLVIO_006042"/>
        <gene id="454" protId="K4DXI6" geneId="TCSYLVIO_005970"/>
        <gene id="456" protId="K4DK89" geneId="TCSYLVIO_010539"/>
        <gene id="457" protId="K4EAB8" geneId="TCSYLVIO_001724"/>
        <gene id="459" protId="K4E4M7" geneId="TCSYLVIO_003441"/>
        <gene id="463" protId="K4E9N8" geneId="TCSYLVIO_001508"/>
        <gene id="464" protId="K4E4S4" geneId="TCSYLVIO_003498"/>
        <gene id="468" protId="K4DSD2" geneId="TCSYLVIO_007974"/>
        <gene id="470" protId="K4DTE0" geneId="TCSYLVIO_007384"/>
        <gene id="472" protId="K4DYR2" geneId="TCSYLVIO_005436"/>
        <gene id="474" protId="K4DU81" geneId="TCSYLVIO_000304"/>
        <gene id="475" protId="K4DU64" geneId="TCSYLVIO_007068"/>
        <gene id="478" protId="K4E5U6" geneId="TCSYLVIO_003153"/>
        <gene id="479" protId="K4E4T6" geneId="TCSYLVIO_003750"/>
        <gene id="481" protId="K4E4X8" geneId="TCSYLVIO_003267"/>
        <gene id="483" protId="K4DUT5" geneId="TCSYLVIO_007289"/>
        <gene id="485" protId="K4E438" geneId="TCSYLVIO_003784"/>
        <gene id="487" protId="K4DJ84" geneId="TCSYLVIO_010928"/>
        <gene id="489" protId="K4DSR2" geneId="TCSYLVIO_007603"/>
        <gene id="491" protId="K4E936" geneId="TCSYLVIO_001727"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="T.cruzi" link="http://www.uniprot.org/taxonomy/5693"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="733"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="701"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="633"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="0.118"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="623"/>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="619"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="561"/>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="531"/>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="16">
        <score id="inparalog" value="0.125"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="525"/>
      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="511"/>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="483"/>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.87"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="470"/>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="463"/>
      <geneRef id="25">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="26">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="13">
      <score id="bit" value="443"/>
      <geneRef id="27">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="14">
      <score id="bit" value="433"/>
      <geneRef id="29">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="30">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="31">
        <score id="inparalog" value="0.261"/>
      </geneRef>
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