<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="180" inparalogs="427"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Dictyoglomus turgidum " NCBITaxId="515635">
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        <gene id="5" protId="B8DYH6" geneId="dnaK"/>
        <gene id="7" protId="B8E117" geneId="Dtur_1480"/>
        <gene id="8" protId="B8E152" geneId="Dtur_0899"/>
        <gene id="10" protId="B8E1A9" geneId="groL"/>
        <gene id="12" protId="B8E0K7" geneId="tuf"/>
        <gene id="14" protId="B8DYT2" geneId="atpA"/>
        <gene id="17" protId="B8E0W6" geneId="ileS"/>
        <gene id="19" protId="B8E2J3" geneId="leuS"/>
        <gene id="21" protId="B8E2A9" geneId="lepA"/>
        <gene id="23" protId="B8E2J0" geneId="lon"/>
        <gene id="25" protId="B8E2B4" geneId="mnmG"/>
        <gene id="27" protId="B8E0F4" geneId="pyrG"/>
        <gene id="29" protId="B8E2H3" geneId="guaA"/>
        <gene id="31" protId="B8E039" geneId="glpK"/>
        <gene id="33" protId="B8E145" geneId="Dtur_0892"/>
        <gene id="35" protId="B8E226" geneId="alaS"/>
        <gene id="37" protId="B8E1K1" geneId="Dtur_0197"/>
        <gene id="39" protId="B8E1C0" geneId="aspS"/>
        <gene id="41" protId="B8E030" geneId="fusA"/>
        <gene id="43" protId="B8DYT0" geneId="atpD"/>
        <gene id="45" protId="B8E198" geneId="Dtur_0945"/>
        <gene id="47" protId="B8E008" geneId="glyA"/>
        <gene id="49" protId="B8E279" geneId="mutS"/>
        <gene id="51" protId="B8E1C7" geneId="rpoC"/>
        <gene id="54" protId="B8E1H7" geneId="Dtur_0171"/>
        <gene id="55" protId="B8DZK2" geneId="Dtur_0650"/>
        <gene id="57" protId="B8DZU8" geneId="guaB"/>
        <gene id="59" protId="B8E1Q7" geneId="metG"/>
        <gene id="61" protId="B8DZ75" geneId="Dtur_0515"/>
        <gene id="63" protId="B8E223" geneId="glmS"/>
        <gene id="65" protId="B8DZZ0" geneId="Dtur_0792"/>
        <gene id="67" protId="B8E0V3" geneId="purD"/>
        <gene id="69" protId="B8DZS1" geneId="iscS"/>
        <gene id="71" protId="B8E384" geneId="Dtur_1686"/>
        <gene id="72" protId="B8E172" geneId="Dtur_0919"/>
        <gene id="73" protId="B8DZB6" geneId="Dtur_0559"/>
        <gene id="75" protId="B8E1B8" geneId="purA"/>
        <gene id="77" protId="B8E0A6" geneId="gltX"/>
        <gene id="79" protId="B8E137" geneId="atpB"/>
        <gene id="82" protId="B8DZC6" geneId="Dtur_0569"/>
        <gene id="83" protId="B8DZM5" geneId="Dtur_0673"/>
        <gene id="86" protId="B8E2N5" geneId="tgt"/>
        <gene id="88" protId="B8E0R9" geneId="serS"/>
        <gene id="90" protId="B8E0P8" geneId="Dtur_1796"/>
        <gene id="92" protId="B8E2U6" geneId="gatB"/>
        <gene id="95" protId="B8E228" geneId="thrS"/>
        <gene id="97" protId="B8E1P8" geneId="Dtur_0247"/>
        <gene id="98" protId="B8DZJ4" geneId="Dtur_0642"/>
        <gene id="99" protId="B8E023" geneId="Dtur_0825"/>
        <gene id="100" protId="B8DZJ3" geneId="Dtur_0641"/>
        <gene id="101" protId="B8DZM6" geneId="Dtur_0674"/>
        <gene id="102" protId="B8DZC5" geneId="Dtur_0568"/>
        <gene id="104" protId="B8E045" geneId="Dtur_0847"/>
        <gene id="106" protId="B8E158" geneId="Dtur_0905"/>
        <gene id="108" protId="B8DZY1" geneId="prs"/>
        <gene id="111" protId="B8E0N5" geneId="carA"/>
        <gene id="113" protId="B8DYH7" geneId="dnaJ"/>
        <gene id="115" protId="B8E1C6" geneId="rpoB"/>
        <gene id="118" protId="B8DYL0" geneId="Dtur_0054"/>
        <gene id="120" protId="B8E003" geneId="prfA"/>
        <gene id="122" protId="B8E184" geneId="asnS"/>
        <gene id="124" protId="B8E005" geneId="Dtur_0807"/>
        <gene id="126" protId="B8E1I5" geneId="Dtur_0181"/>
        <gene id="128" protId="B8E1A0" geneId="smc"/>
        <gene id="130" protId="B8E391" geneId="cysS"/>
        <gene id="132" protId="B8E0T4" geneId="Dtur_1397"/>
        <gene id="133" protId="B8DZU4" geneId="Dtur_0745"/>
        <gene id="135" protId="B8E0S0" geneId="Dtur_1383"/>
        <gene id="137" protId="B8DZX8" geneId="lig"/>
        <gene id="139" protId="B8DZQ1" geneId="Dtur_0699"/>
        <gene id="141" protId="B8E2G8" geneId="ffh"/>
        <gene id="144" protId="B8E335" geneId="folD"/>
        <gene id="146" protId="B8DZ90" geneId="Dtur_0533"/>
        <gene id="148" protId="B8E2E5" geneId="gcvT"/>
        <gene id="150" protId="B8E1D3" geneId="rplC"/>
        <gene id="152" protId="B8DYR7" geneId="mnmE"/>
        <gene id="154" protId="B8DZV7" geneId="Dtur_0758"/>
        <gene id="156" protId="B8E2R2" geneId="tpiA"/>
        <gene id="158" protId="B8DZV1" geneId="Dtur_0752"/>
        <gene id="160" protId="B8E2U5" geneId="gatA"/>
        <gene id="162" protId="B8E290" geneId="clpP"/>
        <gene id="164" protId="B8E1D6" geneId="rplB"/>
        <gene id="166" protId="B8E1F3" geneId="adk"/>
        <gene id="168" protId="B8E2X2" geneId="leuB"/>
        <gene id="171" protId="B8E0W0" geneId="Dtur_1423"/>
        <gene id="173" protId="B8E0X4" geneId="Dtur_1437"/>
        <gene id="175" protId="B8E0X1" geneId="Dtur_1434"/>
        <gene id="177" protId="B8E106" geneId="trpS"/>
        <gene id="179" protId="B8E196" geneId="Dtur_0943"/>
        <gene id="180" protId="B8E1U2" geneId="Dtur_0422"/>
        <gene id="181" protId="B8E0M3" geneId="Dtur_1771"/>
        <gene id="183" protId="B8E1I7" geneId="Dtur_0183"/>
        <gene id="185" protId="B8E2Z4" geneId="Dtur_1215"/>
        <gene id="187" protId="B8E2Y7" geneId="infB"/>
        <gene id="189" protId="B8E123" geneId="argS"/>
        <gene id="191" protId="B8E2X8" geneId="Dtur_1199"/>
        <gene id="193" protId="B8E280" geneId="mutL"/>
        <gene id="195" protId="B8DZP1" geneId="mnmA"/>
        <gene id="198" protId="B8E2F6" geneId="Dtur_1526"/>
        <gene id="200" protId="B8DYU0" geneId="Dtur_0141"/>
        <gene id="205" protId="B8DYN2" geneId="Dtur_0076"/>
        <gene id="207" protId="B8E2T2" geneId="Dtur_1153"/>
        <gene id="209" protId="B8E1C8" geneId="rpsL"/>
        <gene id="211" protId="B8E129" geneId="rsmA"/>
        <gene id="213" protId="B8E0K3" geneId="rplK"/>
        <gene id="215" protId="B8E370" geneId="Dtur_1672"/>
        <gene id="217" protId="B8E0U2" geneId="Dtur_1405"/>
        <gene id="219" protId="B8E2Y2" geneId="rpsB"/>
        <gene id="221" protId="B8E1B4" geneId="gcp"/>
        <gene id="223" protId="B8DZS2" geneId="Dtur_0720"/>
        <gene id="225" protId="B8E1E5" geneId="rplE"/>
        <gene id="227" protId="B8E1D4" geneId="rplD"/>
        <gene id="229" protId="B8DZN5" geneId="Dtur_0683"/>
        <gene id="231" protId="B8E2S6" geneId="Dtur_1147"/>
        <gene id="233" protId="B8E1Z0" geneId="Dtur_0473"/>
        <gene id="235" protId="B8E0D9" geneId="pheS"/>
        <gene id="238" protId="B8E316" geneId="Dtur_1238"/>
        <gene id="240" protId="B8E343" geneId="Dtur_1644"/>
        <gene id="241" protId="B8E365" geneId="Dtur_1667"/>
        <gene id="242" protId="B8E1T2" geneId="Dtur_0411"/>
        <gene id="243" protId="B8E1T6" geneId="Dtur_0415"/>
        <gene id="246" protId="B8E0V4" geneId="Dtur_1417"/>
        <gene id="248" protId="B8E0B3" geneId="rpmA"/>
        <gene id="250" protId="B8E0Y0" geneId="Dtur_1443"/>
        <gene id="252" protId="B8DYW8" geneId="Dtur_0268"/>
        <gene id="254" protId="B8E1G6" geneId="rplM"/>
        <gene id="256" protId="B8E028" geneId="proS"/>
        <gene id="258" protId="B8E305" geneId="Dtur_1227"/>
        <gene id="260" protId="B8E2Z1" geneId="truB"/>
        <gene id="262" protId="B8DYX9" geneId="Dtur_0280"/>
        <gene id="264" protId="B8E0W3" geneId="Dtur_1426"/>
        <gene id="266" protId="B8E239" geneId="Dtur_1036"/>
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        <gene id="270" protId="B8E199" geneId="rnc"/>
        <gene id="272" protId="B8E249" geneId="ppnK"/>
        <gene id="275" protId="B8E1Z4" geneId="Dtur_0477"/>
        <gene id="276" protId="B8E256" geneId="Dtur_1053"/>
        <gene id="277" protId="B8DZ79" geneId="Dtur_0519"/>
        <gene id="278" protId="B8E147" geneId="Dtur_0894"/>
        <gene id="279" protId="B8E3A2" geneId="Dtur_1704"/>
        <gene id="280" protId="B8DZU0" geneId="Dtur_0741"/>
        <gene id="281" protId="B8E265" geneId="Dtur_1062"/>
        <gene id="282" protId="B8DYP1" geneId="Dtur_0085"/>
        <gene id="283" protId="B8E3B7" geneId="Dtur_1719"/>
        <gene id="284" protId="B8E264" geneId="Dtur_1061"/>
        <gene id="285" protId="B8E3A3" geneId="Dtur_1705"/>
        <gene id="286" protId="B8DYV8" geneId="Dtur_0159"/>
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        <gene id="288" protId="B8E2U2" geneId="Dtur_1163"/>
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        <gene id="290" protId="B8DZ68" geneId="Dtur_0390"/>
        <gene id="291" protId="B8E026" geneId="Dtur_0828"/>
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        <gene id="293" protId="B8E2U3" geneId="Dtur_1164"/>
        <gene id="294" protId="B8E1G2" geneId="Dtur_1010"/>
        <gene id="295" protId="B8E0W9" geneId="Dtur_1432"/>
        <gene id="296" protId="B8E1M2" geneId="Dtur_0218"/>
        <gene id="297" protId="B8DYP2" geneId="Dtur_0086"/>
        <gene id="300" protId="B8E1F4" geneId="Dtur_1002"/>
        <gene id="302" protId="B8E1C1" geneId="hisS"/>
        <gene id="304" protId="B8E2D6" geneId="Dtur_1506"/>
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        <gene id="308" protId="B8E1F1" geneId="rplO"/>
        <gene id="311" protId="B8E1B0" geneId="groS"/>
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        <gene id="318" protId="B8E100" geneId="Dtur_1463"/>
        <gene id="320" protId="B8DYG2" geneId="Dtur_0003"/>
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        <gene id="402" protId="B8E1F6" geneId="rpmJ"/>
        <gene id="404" protId="B8E127" geneId="tyrS"/>
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        <gene id="413" protId="B8E070" geneId="Dtur_0872"/>
        <gene id="415" protId="B8E0B1" geneId="nadD"/>
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    <notes>
      <additionalInformation abbreviation="D.turgidum" link="http://www.uniprot.org/taxonomy/515635"/>
    </notes>
  </species>
  <species name="Pneumocystis jiroveci " NCBITaxId="1209962">
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    <notes>
      <additionalInformation abbreviation="P.jiroveci" link="http://www.uniprot.org/taxonomy/1209962"/>
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