<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="289" inparalogs="754"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Dictyoglomus turgidum " NCBITaxId="515635">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
        <gene id="1" protId="B8E0W6" geneId="ileS"/>
        <gene id="3" protId="B8E0N4" geneId="carB"/>
        <gene id="6" protId="B8E2A9" geneId="lepA"/>
        <gene id="8" protId="B8DYH6" geneId="dnaK"/>
        <gene id="10" protId="B8E292" geneId="valS"/>
        <gene id="13" protId="B8E2J0" geneId="lon"/>
        <gene id="15" protId="B8E2J3" geneId="leuS"/>
        <gene id="17" protId="B8E2G9" geneId="Dtur_1539"/>
        <gene id="19" protId="B8E1A9" geneId="groL"/>
        <gene id="21" protId="B8E137" geneId="atpB"/>
        <gene id="24" protId="B8E145" geneId="Dtur_0892"/>
        <gene id="27" protId="B8DYT2" geneId="atpA"/>
        <gene id="29" protId="B8E0K7" geneId="tuf"/>
        <gene id="31" protId="B8DYS7" geneId="Dtur_0127"/>
        <gene id="33" protId="B8E0F4" geneId="pyrG"/>
        <gene id="36" protId="B8E2B4" geneId="mnmG"/>
        <gene id="38" protId="B8E066" geneId="ftsH"/>
        <gene id="40" protId="B8E226" geneId="alaS"/>
        <gene id="43" protId="B8E039" geneId="glpK"/>
        <gene id="45" protId="B8E242" geneId="Dtur_1039"/>
        <gene id="47" protId="B8E336" geneId="fhs"/>
        <gene id="50" protId="B8E228" geneId="thrS"/>
        <gene id="52" protId="B8E1L6" geneId="Dtur_0212"/>
        <gene id="55" protId="B8E2S5" geneId="pnp"/>
        <gene id="57" protId="B8E2Y7" geneId="infB"/>
        <gene id="59" protId="B8E0W1" geneId="eno"/>
        <gene id="63" protId="B8E0Q4" geneId="Dtur_1802"/>
        <gene id="65" protId="B8E1H7" geneId="Dtur_0171"/>
        <gene id="66" protId="B8DZK2" geneId="Dtur_0650"/>
        <gene id="69" protId="B8E198" geneId="Dtur_0945"/>
        <gene id="71" protId="B8E2D3" geneId="pgk"/>
        <gene id="74" protId="B8E008" geneId="glyA"/>
        <gene id="77" protId="B8E1B8" geneId="purA"/>
        <gene id="80" protId="B8E0N3" geneId="argH"/>
        <gene id="82" protId="B8E2U5" geneId="gatA"/>
        <gene id="84" protId="B8DZU8" geneId="guaB"/>
        <gene id="86" protId="B8E1C0" geneId="aspS"/>
        <gene id="88" protId="B8E223" geneId="glmS"/>
        <gene id="91" protId="B8E2J2" geneId="Dtur_1562"/>
        <gene id="95" protId="B8E0L0" geneId="Dtur_1758"/>
        <gene id="97" protId="B8E1Q7" geneId="metG"/>
        <gene id="99" protId="B8E279" geneId="mutS"/>
        <gene id="101" protId="B8E2U6" geneId="gatB"/>
        <gene id="103" protId="B8E1C7" geneId="rpoC"/>
        <gene id="106" protId="B8E384" geneId="Dtur_1686"/>
        <gene id="107" protId="B8E172" geneId="Dtur_0919"/>
        <gene id="108" protId="B8DZB6" geneId="Dtur_0559"/>
        <gene id="110" protId="B8DZ75" geneId="Dtur_0515"/>
        <gene id="112" protId="B8E023" geneId="Dtur_0825"/>
        <gene id="113" protId="B8E1P8" geneId="Dtur_0247"/>
        <gene id="114" protId="B8DZJ4" geneId="Dtur_0642"/>
        <gene id="115" protId="B8DZJ3" geneId="Dtur_0641"/>
        <gene id="119" protId="B8E2N5" geneId="tgt"/>
        <gene id="121" protId="B8E030" geneId="fusA"/>
        <gene id="123" protId="B8E0N9" geneId="argG"/>
        <gene id="125" protId="B8E0P8" geneId="Dtur_1796"/>
        <gene id="128" protId="B8E291" geneId="clpX"/>
        <gene id="130" protId="B8E003" geneId="prfA"/>
        <gene id="133" protId="B8E045" geneId="Dtur_0847"/>
        <gene id="135" protId="B8E158" geneId="Dtur_0905"/>
        <gene id="138" protId="B8E367" geneId="Dtur_1669"/>
        <gene id="142" protId="B8E0A6" geneId="gltX"/>
        <gene id="144" protId="B8DZS1" geneId="iscS"/>
        <gene id="146" protId="B8DZZ0" geneId="Dtur_0792"/>
        <gene id="148" protId="B8E278" geneId="miaB"/>
        <gene id="150" protId="B8E1I7" geneId="Dtur_0183"/>
        <gene id="154" protId="B8E0R9" geneId="serS"/>
        <gene id="156" protId="B8E1Z9" geneId="Dtur_0484"/>
        <gene id="158" protId="B8E2H3" geneId="guaA"/>
        <gene id="160" protId="B8DZY1" geneId="prs"/>
        <gene id="165" protId="B8E1C6" geneId="rpoB"/>
        <gene id="169" protId="B8DYJ5" geneId="Dtur_0039"/>
        <gene id="171" protId="B8E1A0" geneId="smc"/>
        <gene id="173" protId="B8E184" geneId="asnS"/>
        <gene id="175" protId="B8E0I1" geneId="Dtur_1352"/>
        <gene id="177" protId="B8DZX8" geneId="lig"/>
        <gene id="179" protId="B8DZQ2" geneId="ldh"/>
        <gene id="183" protId="B8E0B2" geneId="obg"/>
        <gene id="185" protId="B8DYI6" geneId="Dtur_0030"/>
        <gene id="187" protId="B8DYH7" geneId="dnaJ"/>
        <gene id="189" protId="B8E1K1" geneId="Dtur_0197"/>
        <gene id="191" protId="B8E108" geneId="Dtur_1471"/>
        <gene id="193" protId="B8E0N6" geneId="argD"/>
        <gene id="195" protId="B8DZ10" geneId="Dtur_0315"/>
        <gene id="198" protId="B8E0V6" geneId="Dtur_1419"/>
        <gene id="200" protId="B8DZV2" geneId="Dtur_0753"/>
        <gene id="202" protId="B8DZ90" geneId="Dtur_0533"/>
        <gene id="205" protId="B8E182" geneId="mtnA"/>
        <gene id="207" protId="B8E0P2" geneId="arcB"/>
        <gene id="209" protId="B8E0S0" geneId="Dtur_1383"/>
        <gene id="211" protId="B8E0R2" geneId="Dtur_1811"/>
        <gene id="214" protId="B8E290" geneId="clpP"/>
        <gene id="216" protId="B8DZS0" geneId="Dtur_0718"/>
        <gene id="218" protId="B8E1S5" geneId="Dtur_0404"/>
        <gene id="220" protId="B8E391" geneId="cysS"/>
        <gene id="223" protId="B8DZQ1" geneId="Dtur_0699"/>
        <gene id="226" protId="B8E270" geneId="Dtur_1068"/>
        <gene id="228" protId="B8E196" geneId="Dtur_0943"/>
        <gene id="230" protId="B8E131" geneId="Dtur_1494"/>
        <gene id="232" protId="B8E373" geneId="Dtur_1675"/>
        <gene id="234" protId="B8E2X4" geneId="Dtur_1195"/>
        <gene id="236" protId="B8E1M7" geneId="Dtur_0223"/>
        <gene id="238" protId="B8DZP1" geneId="mnmA"/>
        <gene id="240" protId="B8E1Y2" geneId="Dtur_0465"/>
        <gene id="243" protId="B8E1Z0" geneId="Dtur_0473"/>
        <gene id="246" protId="B8E181" geneId="Dtur_0928"/>
        <gene id="248" protId="B8E1B4" geneId="gcp"/>
        <gene id="250" protId="B8E335" geneId="folD"/>
        <gene id="253" protId="B8E0D4" geneId="Dtur_1305"/>
        <gene id="254" protId="B8DYU2" geneId="Dtur_0143"/>
        <gene id="259" protId="B8E2R2" geneId="tpiA"/>
        <gene id="261" protId="B8E280" geneId="mutL"/>
        <gene id="263" protId="B8E0G0" geneId="Dtur_1331"/>
        <gene id="265" protId="B8E2W6" geneId="Dtur_1187"/>
        <gene id="267" protId="B8E1F3" geneId="adk"/>
        <gene id="269" protId="B8E2G8" geneId="ffh"/>
        <gene id="271" protId="B8E2T2" geneId="Dtur_1153"/>
        <gene id="272" protId="B8E343" geneId="Dtur_1644"/>
        <gene id="273" protId="B8E365" geneId="Dtur_1667"/>
        <gene id="274" protId="B8E1T2" geneId="Dtur_0411"/>
        <gene id="275" protId="B8E1T6" geneId="Dtur_0415"/>
        <gene id="287" protId="B8DZB7" geneId="Dtur_0560"/>
        <gene id="290" protId="B8E0P6" geneId="Dtur_1794"/>
        <gene id="292" protId="B8DZV1" geneId="Dtur_0752"/>
        <gene id="294" protId="B8E2X8" geneId="Dtur_1199"/>
        <gene id="296" protId="B8E2E5" geneId="gcvT"/>
        <gene id="298" protId="B8DYL0" geneId="Dtur_0054"/>
        <gene id="300" protId="B8DYJ6" geneId="Dtur_0040"/>
        <gene id="302" protId="B8DZ67" geneId="Dtur_0389"/>
        <gene id="303" protId="B8DZN7" geneId="Dtur_0685"/>
        <gene id="305" protId="B8E0X1" geneId="Dtur_1434"/>
        <gene id="307" protId="B8E1F4" geneId="Dtur_1002"/>
        <gene id="310" protId="B8E281" geneId="miaA"/>
        <gene id="312" protId="B8E2X0" geneId="leuC"/>
        <gene id="314" protId="B8DYL7" geneId="Dtur_0061"/>
        <gene id="315" protId="B8DYQ1" geneId="Dtur_0095"/>
        <gene id="316" protId="B8DYG9" geneId="Dtur_0010"/>
        <gene id="319" protId="B8DYX9" geneId="Dtur_0280"/>
        <gene id="324" protId="B8E088" geneId="rsmH"/>
        <gene id="326" protId="B8E0M7" geneId="Dtur_1775"/>
        <gene id="327" protId="B8E1J9" geneId="Dtur_0195"/>
        <gene id="329" protId="B8DYR7" geneId="mnmE"/>
        <gene id="331" protId="B8E2X2" geneId="leuB"/>
        <gene id="336" protId="B8DZV7" geneId="Dtur_0758"/>
        <gene id="338" protId="B8E283" geneId="hflX"/>
        <gene id="340" protId="B8E106" geneId="trpS"/>
        <gene id="342" protId="B8E0M3" geneId="Dtur_1771"/>
        <gene id="343" protId="B8DYY5" geneId="Dtur_0288"/>
        <gene id="346" protId="B8E151" geneId="Dtur_0898"/>
        <gene id="349" protId="B8E0W0" geneId="Dtur_1423"/>
        <gene id="351" protId="B8E1U0" geneId="Dtur_0419"/>
        <gene id="354" protId="B8E1D6" geneId="rplB"/>
        <gene id="356" protId="B8E3E6" geneId="Dtur_1748"/>
        <gene id="358" protId="B8E2X5" geneId="Dtur_1196"/>
        <gene id="360" protId="B8E390" geneId="Dtur_1692"/>
        <gene id="362" protId="B8DZC8" geneId="Dtur_0572"/>
        <gene id="367" protId="B8E2P4" geneId="Dtur_1615"/>
        <gene id="369" protId="B8E127" geneId="tyrS"/>
        <gene id="371" protId="B8DZ22" geneId="Dtur_0334"/>
        <gene id="372" protId="B8E331" geneId="Dtur_1632"/>
        <gene id="373" protId="B8E3F2" geneId="Dtur_1754"/>
        <gene id="375" protId="B8E2U0" geneId="gpsA"/>
        <gene id="378" protId="B8DYU0" geneId="Dtur_0141"/>
        <gene id="383" protId="B8E282" geneId="Dtur_1080"/>
        <gene id="386" protId="B8E2F6" geneId="Dtur_1526"/>
        <gene id="389" protId="B8E2Z4" geneId="Dtur_1215"/>
        <gene id="391" protId="B8DYM9" geneId="Dtur_0073"/>
        <gene id="393" protId="B8E0Q1" geneId="Dtur_1799"/>
        <gene id="394" protId="B8E1X9" geneId="Dtur_0462"/>
        <gene id="397" protId="B8DYI0" geneId="Dtur_0021"/>
        <gene id="399" protId="B8DZQ5" geneId="Dtur_0703"/>
        <gene id="401" protId="B8E1C1" geneId="hisS"/>
        <gene id="404" protId="B8E195" geneId="Dtur_0942"/>
        <gene id="406" protId="B8E1I5" geneId="Dtur_0181"/>
        <gene id="408" protId="B8E2S6" geneId="Dtur_1147"/>
        <gene id="412" protId="B8E098" geneId="Dtur_1265"/>
        <gene id="414" protId="B8E183" geneId="mtaD"/>
        <gene id="416" protId="B8DZ19" geneId="Dtur_0328"/>
        <gene id="418" protId="B8E1D4" geneId="rplD"/>
        <gene id="420" protId="B8E2S8" geneId="dapA"/>
        <gene id="422" protId="B8E0Y0" geneId="Dtur_1443"/>
        <gene id="424" protId="B8DZS2" geneId="Dtur_0720"/>
        <gene id="426" protId="B8E001" geneId="tdk"/>
        <gene id="428" protId="B8E1I4" geneId="Dtur_0180"/>
        <gene id="430" protId="B8E0X6" geneId="fmt"/>
        <gene id="432" protId="B8E316" geneId="Dtur_1238"/>
        <gene id="434" protId="B8E2M9" geneId="Dtur_1600"/>
        <gene id="437" protId="B8E0D3" geneId="Dtur_1304"/>
        <gene id="439" protId="B8E1C8" geneId="rpsL"/>
        <gene id="441" protId="B8E081" geneId="coaE"/>
        <gene id="443" protId="B8E1C9" geneId="rpsG"/>
        <gene id="446" protId="B8DZJ0" geneId="Dtur_0638"/>
        <gene id="449" protId="B8E1H5" geneId="Dtur_0169"/>
        <gene id="452" protId="B8E0F2" geneId="era"/>
        <gene id="454" protId="B8DYU4" geneId="Dtur_0145"/>
        <gene id="456" protId="B8E305" geneId="Dtur_1227"/>
        <gene id="458" protId="B8E1D3" geneId="rplC"/>
        <gene id="460" protId="B8E029" geneId="dut"/>
        <gene id="462" protId="B8E2Z1" geneId="truB"/>
        <gene id="464" protId="B8E0D9" geneId="pheS"/>
        <gene id="466" protId="B8E0V1" geneId="Dtur_1414"/>
        <gene id="468" protId="B8E2Y2" geneId="rpsB"/>
        <gene id="470" protId="B8E1G6" geneId="rplM"/>
        <gene id="472" protId="B8E005" geneId="Dtur_0807"/>
        <gene id="474" protId="B8DZJ1" geneId="Dtur_0639"/>
        <gene id="476" protId="B8E0F3" geneId="Dtur_1324"/>
        <gene id="478" protId="B8E0A8" geneId="Dtur_1275"/>
        <gene id="480" protId="B8E1B9" geneId="Dtur_0967"/>
        <gene id="484" protId="B8DZF5" geneId="Dtur_0600"/>
        <gene id="486" protId="B8DZ37" geneId="Dtur_0351"/>
        <gene id="488" protId="B8E0K3" geneId="rplK"/>
        <gene id="490" protId="B8E352" geneId="Dtur_1654"/>
        <gene id="492" protId="B8E239" geneId="Dtur_1036"/>
        <gene id="495" protId="B8E1W3" geneId="Dtur_0444"/>
        <gene id="497" protId="B8E0L2" geneId="Dtur_1760"/>
        <gene id="499" protId="B8DZ32" geneId="Dtur_0345"/>
        <gene id="500" protId="B8E0R4" geneId="Dtur_1813"/>
        <gene id="502" protId="B8E2Q5" geneId="Dtur_1626"/>
        <gene id="504" protId="B8E097" geneId="Dtur_1264"/>
        <gene id="506" protId="B8E063" geneId="Dtur_0865"/>
        <gene id="508" protId="B8E1F8" geneId="rpsK"/>
        <gene id="510" protId="B8E0R3" geneId="Dtur_1812"/>
        <gene id="512" protId="B8E1F0" geneId="rpsE"/>
        <gene id="514" protId="B8E118" geneId="Dtur_1481"/>
        <gene id="518" protId="B8DZX0" geneId="nfi"/>
        <gene id="520" protId="B8E0E0" geneId="Dtur_1311"/>
        <gene id="522" protId="B8E2X9" geneId="frr"/>
        <gene id="524" protId="B8E249" geneId="ppnK"/>
        <gene id="526" protId="B8E2P1" geneId="ruvB"/>
        <gene id="529" protId="B8E0T1" geneId="pcm"/>
        <gene id="531" protId="B8E136" geneId="Dtur_1499"/>
        <gene id="533" protId="B8E0F5" geneId="Dtur_1326"/>
        <gene id="537" protId="B8E208" geneId="Dtur_0498"/>
        <gene id="538" protId="B8E1U5" geneId="Dtur_0425"/>
        <gene id="539" protId="B8E344" geneId="Dtur_1645"/>
        <gene id="541" protId="B8E0W3" geneId="Dtur_1426"/>
        <gene id="543" protId="B8E0X7" geneId="def"/>
        <gene id="545" protId="B8E2D6" geneId="Dtur_1506"/>
        <gene id="550" protId="B8DZW2" geneId="lipB"/>
        <gene id="552" protId="B8DYG2" geneId="Dtur_0003"/>
        <gene id="556" protId="B8E2M6" geneId="Dtur_1597"/>
        <gene id="561" protId="B8DZE4" geneId="Dtur_0589"/>
        <gene id="563" protId="B8E2K4" geneId="pyrC"/>
        <gene id="569" protId="B8DZF6" geneId="Dtur_0601"/>
        <gene id="571" protId="B8E0F7" geneId="ybeY"/>
        <gene id="573" protId="B8E1B0" geneId="groS"/>
        <gene id="575" protId="B8DYH5" geneId="grpE"/>
        <gene id="578" protId="B8DYS3" geneId="Dtur_0123"/>
        <gene id="580" protId="B8DZG9" geneId="Dtur_0614"/>
        <gene id="582" protId="B8E222" geneId="glmM"/>
        <gene id="584" protId="B8DYX2" geneId="Dtur_0272"/>
        <gene id="586" protId="B8E307" geneId="Dtur_1229"/>
        <gene id="588" protId="B8E2D9" geneId="Dtur_1509"/>
        <gene id="590" protId="B8E0G6" geneId="Dtur_1337"/>
        <gene id="592" protId="B8E1G1" geneId="rplQ"/>
        <gene id="594" protId="B8E1B1" geneId="Dtur_0959"/>
        <gene id="595" protId="B8E2Q1" geneId="Dtur_1622"/>
        <gene id="596" protId="B8DYZ3" geneId="Dtur_0297"/>
        <gene id="598" protId="B8E2Q6" geneId="Dtur_1627"/>
        <gene id="601" protId="B8E113" geneId="ispD"/>
        <gene id="603" protId="B8E111" geneId="Dtur_1474"/>
        <gene id="605" protId="B8E2Z3" geneId="Dtur_1214"/>
        <gene id="607" protId="B8E0Z7" geneId="speE"/>
        <gene id="609" protId="B8E0J4" geneId="lysA"/>
        <gene id="613" protId="B8E1G5" geneId="truA"/>
        <gene id="615" protId="B8E1K5" geneId="Dtur_0201"/>
        <gene id="617" protId="B8E0F1" geneId="deoC"/>
        <gene id="619" protId="B8DZT1" geneId="Dtur_0731"/>
        <gene id="621" protId="B8E1F7" geneId="rpsM"/>
        <gene id="624" protId="B8DZ49" geneId="Dtur_0371"/>
        <gene id="625" protId="B8E374" geneId="Dtur_1676"/>
        <gene id="627" protId="B8E0E1" geneId="rplT"/>
        <gene id="629" protId="B8E0B4" geneId="rplU"/>
        <gene id="631" protId="B8DYM3" geneId="Dtur_0067"/>
        <gene id="632" protId="B8E0W4" geneId="Dtur_1427"/>
        <gene id="635" protId="B8E100" geneId="Dtur_1463"/>
        <gene id="636" protId="B8E2B9" geneId="Dtur_1117"/>
        <gene id="638" protId="B8DZ31" geneId="Dtur_0344"/>
        <gene id="639" protId="B8E161" geneId="Dtur_0908"/>
        <gene id="641" protId="B8E1D7" geneId="rpsS"/>
        <gene id="644" protId="B8E1D2" geneId="rpsJ"/>
        <gene id="646" protId="B8E0I5" geneId="Dtur_1356"/>
        <gene id="664" protId="B8E2Q8" geneId="Dtur_1629"/>
        <gene id="665" protId="B8E2W9" geneId="leuA"/>
        <gene id="666" protId="B8E2X3" geneId="Dtur_1194"/>
        <gene id="669" protId="B8E0D2" geneId="proA"/>
        <gene id="674" protId="B8E0L3" geneId="Dtur_1761"/>
        <gene id="676" protId="B8DZY5" geneId="tmk"/>
        <gene id="678" protId="B8E2T5" geneId="Dtur_1156"/>
        <gene id="679" protId="B8E2T6" geneId="Dtur_1157"/>
        <gene id="682" protId="B8DZ83" geneId="Dtur_0523"/>
        <gene id="685" protId="B8DZD2" geneId="Dtur_0576"/>
        <gene id="686" protId="B8E024" geneId="Dtur_0826"/>
        <gene id="689" protId="B8DZC7" geneId="Dtur_0571"/>
        <gene id="690" protId="B8DYP7" geneId="Dtur_0091"/>
        <gene id="692" protId="B8DZY7" geneId="Dtur_0789"/>
        <gene id="695" protId="B8E1I6" geneId="Dtur_0182"/>
        <gene id="697" protId="B8DYT1" geneId="atpG"/>
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        <gene id="701" protId="B8E362" geneId="Dtur_1664"/>
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    <notes>
      <additionalInformation abbreviation="D.turgidum" link="http://www.uniprot.org/taxonomy/515635"/>
    </notes>
  </species>
  <species name="Pteropus alecto " NCBITaxId="9402">
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    </database>
    <notes>
      <additionalInformation abbreviation="P.alecto" link="http://www.uniprot.org/taxonomy/9402"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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