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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="D.pseudoobscura" link="http://www.uniprot.org/taxonomy/46245"/>
    </notes>
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    <notes>
      <additionalInformation abbreviation="E.bieneusi" link="http://www.uniprot.org/taxonomy/481877"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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    <orthologGroup id="3">
      <score id="bit" value="999"/>
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      <score id="bit" value="944"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
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    <orthologGroup id="7">
      <score id="bit" value="777"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="741"/>
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        <score id="inparalog" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
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      <score id="bit" value="664"/>
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