<?xml version="1.0" encoding="utf-8"?>
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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="D.plexippus" link="http://www.uniprot.org/taxonomy/13037"/>
    </notes>
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        <gene id="5484" protId="D8QEA8" geneId="SCHCODRAFT_237114"/>
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        <gene id="5486" protId="D8QL96" geneId="SCHCODRAFT_114616"/>
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        <gene id="5496" protId="D8QM19" geneId="SCHCODRAFT_114883"/>
        <gene id="5499" protId="D8QEB7" geneId="SCHCODRAFT_17180"/>
        <gene id="5501" protId="D8PXJ7" geneId="SCHCODRAFT_84848"/>
        <gene id="5502" protId="D8PS24" geneId="SCHCODRAFT_102954"/>
        <gene id="5504" protId="D8PXP2" geneId="SCHCODRAFT_53070"/>
        <gene id="5521" protId="D8Q3R3" geneId="SCHCODRAFT_234587"/>
        <gene id="5522" protId="D8Q3V0" geneId="SCHCODRAFT_55038"/>
        <gene id="5523" protId="D8PSH1" geneId="SCHCODRAFT_232651"/>
        <gene id="5524" protId="D8Q3Q3" geneId="SCHCODRAFT_85119"/>
        <gene id="5525" protId="D8PSJ1" geneId="SCHCODRAFT_51927"/>
        <gene id="5526" protId="D8PVX0" geneId="SCHCODRAFT_51554"/>
        <gene id="5527" protId="D8PZU2" geneId="SCHCODRAFT_53457"/>
        <gene id="5529" protId="D8PTT2" geneId="SCHCODRAFT_50157"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="S.commune" link="http://www.uniprot.org/taxonomy/578458"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="3711"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="2793"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2091"/>
      <geneRef id="5">
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