<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="325" inparalogs="908"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="D.plexippus" link="http://www.uniprot.org/taxonomy/13037"/>
    </notes>
  </species>
  <species name="Halobacterium salinarum " NCBITaxId="64091">
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        <gene id="162" protId="Q9HN77" geneId="pdhA2"/>
        <gene id="163" protId="Q9HNV6" geneId="pdhA1"/>
        <gene id="165" protId="Q9HMR0" geneId="serA1"/>
        <gene id="167" protId="Q9HN75" geneId="dsa"/>
        <gene id="169" protId="Q9HPY4" geneId="folD"/>
        <gene id="171" protId="Q9HNK0" geneId="lfl2"/>
        <gene id="173" protId="Q9HSL6" geneId="mutS2"/>
        <gene id="174" protId="Q9HSM2" geneId="mutS1"/>
        <gene id="176" protId="Q9HSM6" geneId="mutL"/>
        <gene id="178" protId="Q9HS93" geneId="gatB"/>
        <gene id="180" protId="Q9HNJ8" geneId="serS"/>
        <gene id="183" protId="Q9HRI4" geneId="hbd1"/>
        <gene id="187" protId="Q9HNZ7" geneId="icd"/>
        <gene id="189" protId="Q9HN66" geneId="trpS2"/>
        <gene id="191" protId="Q9HPE4" geneId="gbp2"/>
        <gene id="194" protId="Q9HQI9" geneId="eno"/>
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        <gene id="199" protId="Q9HMK3" geneId="pheT"/>
        <gene id="201" protId="Q9HMM4" geneId="radA"/>
        <gene id="204" protId="Q9HQL9" geneId="cysS"/>
        <gene id="206" protId="Q9HHN2" geneId="argS"/>
        <gene id="209" protId="Q9HQJ7" geneId="mrp"/>
        <gene id="211" protId="Q9HMQ2" geneId="argG"/>
        <gene id="219" protId="Q9HMI4" geneId="dppF"/>
        <gene id="221" protId="Q9HMQ3" geneId="argH"/>
        <gene id="224" protId="Q9HMV6" geneId="VNG_2368G"/>
        <gene id="226" protId="Q9HPD1" geneId="rpl2"/>
        <gene id="228" protId="Q9HMY5" geneId="hemC"/>
        <gene id="230" protId="Q9HP07" geneId="VNG_1861C"/>
        <gene id="232" protId="Q9HNF0" geneId="prf1"/>
        <gene id="234" protId="Q9HMP3" geneId="lta"/>
        <gene id="236" protId="Q9HS54" geneId="epf2"/>
        <gene id="238" protId="Q9HRY3" geneId="dnaJ"/>
        <gene id="240" protId="Q9HR84" geneId="chi"/>
        <gene id="241" protId="Q9HR83" geneId="VNG_0818C"/>
        <gene id="246" protId="Q9HRZ2" geneId="yajO1"/>
        <gene id="248" protId="Q9HPR8" geneId="hel"/>
        <gene id="250" protId="Q9HPD4" geneId="rpl3"/>
        <gene id="253" protId="Q9HMD6" geneId="gbp4"/>
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        <gene id="262" protId="Q9HHU7" geneId="cat2"/>
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        <gene id="264" protId="Q9HQB3" geneId="yhdG"/>
        <gene id="266" protId="P57697" geneId="psmA"/>
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        <gene id="274" protId="Q9HNA2" geneId="tfbA"/>
        <gene id="276" protId="P61136" geneId="ndk"/>
        <gene id="278" protId="Q9HQ61" geneId="hbd2"/>
        <gene id="280" protId="Q9HQZ8" geneId="acaB2"/>
        <gene id="281" protId="Q9HRI8" geneId="acaB1"/>
        <gene id="294" protId="Q9HS02" geneId="yafB"/>
        <gene id="303" protId="Q9HS37" geneId="cyc"/>
        <gene id="305" protId="Q9HPJ7" geneId="gcvT"/>
        <gene id="308" protId="Q9HS90" geneId="topA"/>
        <gene id="310" protId="Q9HQ08" geneId="rad3a"/>
        <gene id="312" protId="Q9HMN3" geneId="dpa"/>
        <gene id="315" protId="Q9HRV9" geneId="polB1"/>
        <gene id="317" protId="O07683" geneId="aspS"/>
        <gene id="319" protId="Q9HQD1" geneId="pgk"/>
        <gene id="327" protId="Q9HPQ2" geneId="trp6"/>
        <gene id="328" protId="Q9HHR9" geneId="yocR"/>
        <gene id="330" protId="Q9HQC9" geneId="udk"/>
        <gene id="332" protId="Q9HS79" geneId="arsA1"/>
        <gene id="334" protId="P09224" geneId="sod2"/>
        <gene id="335" protId="P09737" geneId="sod1"/>
        <gene id="337" protId="Q9HND2" geneId="etfA"/>
        <gene id="339" protId="Q9HN62" geneId="tyrS"/>
        <gene id="341" protId="Q9HMV8" geneId="mdh"/>
        <gene id="343" protId="Q9HPB4" geneId="rps5"/>
        <gene id="345" protId="Q9HSL0" geneId="VNG_0179C"/>
        <gene id="348" protId="Q9HMP9" geneId="rad3b"/>
        <gene id="351" protId="Q9HQ70" geneId="cysK"/>
        <gene id="353" protId="Q9HP36" geneId="VNG_1823C"/>
        <gene id="355" protId="Q9HRM6" geneId="aspB2"/>
        <gene id="356" protId="Q9HRX4" geneId="aspB1"/>
        <gene id="357" protId="Q9HQK2" geneId="aspC2"/>
        <gene id="360" protId="Q9HHV3" geneId="bdb"/>
        <gene id="362" protId="Q9HHN5" geneId="gltP"/>
        <gene id="364" protId="Q9HSA2" geneId="caaX"/>
        <gene id="366" protId="Q9HSA8" geneId="ids"/>
        <gene id="369" protId="Q9HQ46" geneId="phr"/>
        <gene id="370" protId="Q9HP89" geneId="phr1"/>
        <gene id="372" protId="Q9HMU4" geneId="nrdA"/>
        <gene id="374" protId="Q9HSL2" geneId="rpl15e"/>
        <gene id="376" protId="Q9HSV1" geneId="galE2"/>
        <gene id="377" protId="Q9HSU9" geneId="gmd"/>
        <gene id="379" protId="Q9HNW6" geneId="ppiA"/>
        <gene id="381" protId="Q9HRE8" geneId="rtcA"/>
        <gene id="383" protId="Q9HQJ5" geneId="rps11"/>
        <gene id="385" protId="Q9HS32" geneId="fad2"/>
        <gene id="387" protId="Q9HRI1" geneId="fbp"/>
        <gene id="390" protId="Q9HQ65" geneId="sdhB"/>
        <gene id="392" protId="Q9HQU4" geneId="guaB"/>
        <gene id="394" protId="Q9HPR4" geneId="VNG_1508C"/>
        <gene id="396" protId="Q9HSK1" geneId="VNG_0190C"/>
        <gene id="398" protId="Q9HMG5" geneId="yqeC"/>
        <gene id="400" protId="P13553" geneId="rplP0"/>
        <gene id="402" protId="Q9HPQ4" geneId="VNG_1524C"/>
        <gene id="404" protId="P0CX00" geneId="rps12"/>
        <gene id="406" protId="O24787" geneId="rpl14p"/>
        <gene id="409" protId="Q9HMH9" geneId="pyrC"/>
        <gene id="411" protId="Q9HR56" geneId="VNG_0854C"/>
        <gene id="417" protId="Q9HR43" geneId="gatA"/>
        <gene id="420" protId="Q9HHV4" geneId="gabT"/>
        <gene id="422" protId="Q9HR35" geneId="lig"/>
        <gene id="424" protId="Q9HQ41" geneId="fabG"/>
        <gene id="426" protId="P57705" geneId="trm1"/>
        <gene id="428" protId="Q9HNJ6" geneId="VNG_2075C"/>
        <gene id="430" protId="P15010" geneId="rps19"/>
        <gene id="432" protId="Q9HS44" geneId="folP"/>
        <gene id="434" protId="Q9HN24" geneId="alaS"/>
        <gene id="436" protId="Q9HP68" geneId="uppS"/>
        <gene id="438" protId="Q9HNP5" geneId="hisS"/>
        <gene id="440" protId="Q9HP11" geneId="eif2ba"/>
        <gene id="442" protId="Q9HN33" geneId="rpiA"/>
        <gene id="444" protId="Q9HQK6" geneId="dphB"/>
        <gene id="446" protId="Q9HST2" geneId="moeA1"/>
        <gene id="447" protId="Q9HST3" geneId="moeA2"/>
        <gene id="449" protId="Q9HNZ8" geneId="VNG_1872C"/>
        <gene id="451" protId="Q9HPZ3" geneId="trh1"/>
        <gene id="453" protId="Q9HQE0" geneId="VNG_1205C"/>
        <gene id="454" protId="Q9HN51" geneId="mtaD"/>
        <gene id="456" protId="Q9HSZ9" geneId="graD5"/>
        <gene id="457" protId="Q9HSZ8" geneId="graD2"/>
        <gene id="459" protId="P57713" geneId="rps2"/>
        <gene id="461" protId="Q9HN40" geneId="rlmE"/>
        <gene id="465" protId="Q9HN56" geneId="tbpE"/>
        <gene id="466" protId="Q9HHE9" geneId="tbpF"/>
        <gene id="467" protId="Q48325" geneId="tbpB1"/>
        <gene id="468" protId="O52018" geneId="tbpD"/>
        <gene id="469" protId="O52004" geneId="tbpC1"/>
        <gene id="472" protId="Q9HN44" geneId="nce"/>
        <gene id="474" protId="Q9HQG3" geneId="flpA"/>
        <gene id="476" protId="Q9HND3" geneId="etfB"/>
        <gene id="478" protId="Q9HQJ2" geneId="rps9"/>
        <gene id="480" protId="Q9HMM6" geneId="csd"/>
        <gene id="482" protId="Q9HQH1" geneId="rsmA"/>
        <gene id="486" protId="Q9HMB6" geneId="adh2"/>
        <gene id="488" protId="Q9HPA7" geneId="adk"/>
        <gene id="491" protId="Q9HQ27" geneId="fen"/>
        <gene id="493" protId="P15009" geneId="rps3"/>
        <gene id="496" protId="Q9HMU8" geneId="nosF1"/>
        <gene id="497" protId="Q9HNY3" geneId="trp2"/>
        <gene id="498" protId="Q9HRZ9" geneId="trp3"/>
        <gene id="503" protId="Q9HHP0" geneId="aph"/>
        <gene id="505" protId="Q9HSS4" geneId="rpl10e"/>
        <gene id="507" protId="Q9HQR6" geneId="hpcE"/>
        <gene id="509" protId="Q9HPJ8" geneId="gcvH"/>
        <gene id="511" protId="Q9HPB8" geneId="rpl6"/>
        <gene id="514" protId="Q9HNB7" geneId="dbp"/>
        <gene id="516" protId="Q9HRJ8" geneId="ctaB"/>
        <gene id="521" protId="Q9HPZ0" geneId="ush"/>
        <gene id="524" protId="Q9HRF8" geneId="araL"/>
        <gene id="525" protId="Q9HR34" geneId="pho2"/>
        <gene id="527" protId="Q9HPB9" geneId="rps8"/>
        <gene id="529" protId="Q9HNS4" geneId="gpdA2"/>
        <gene id="531" protId="Q9HS43" geneId="purH"/>
        <gene id="535" protId="Q9HND8" geneId="atpI"/>
        <gene id="538" protId="Q9HPN8" geneId="clc"/>
        <gene id="540" protId="Q9HS19" geneId="dapAL"/>
        <gene id="542" protId="Q9HQI3" geneId="idsA"/>
        <gene id="543" protId="Q9HND0" geneId="fps"/>
        <gene id="545" protId="Q9HP03" geneId="map"/>
        <gene id="547" protId="Q9HMR6" geneId="aspC1"/>
        <gene id="549" protId="Q9HQI6" geneId="mvk"/>
        <gene id="551" protId="Q9HQ94" geneId="ogg"/>
        <gene id="553" protId="Q9HQT4" geneId="dbh"/>
        <gene id="555" protId="Q9HRA2" geneId="rps15"/>
        <gene id="557" protId="Q9HQJ6" geneId="rps4"/>
        <gene id="561" protId="Q9HN88" geneId="prs"/>
        <gene id="563" protId="Q9HPH9" geneId="aad"/>
        <gene id="564" protId="Q9HQU7" geneId="yajO2"/>
        <gene id="566" protId="Q9HRD0" geneId="ylnA"/>
        <gene id="567" protId="Q9HHW5" geneId="phoT2"/>
        <gene id="569" protId="Q9HP20" geneId="gatD"/>
        <gene id="572" protId="Q9HNR4" geneId="pus10"/>
        <gene id="574" protId="O24786" geneId="rps17p"/>
        <gene id="576" protId="Q9HRL7" geneId="nolD"/>
        <gene id="580" protId="Q9HSP7" geneId="aup"/>
        <gene id="583" protId="Q9HNH7" geneId="VNG_2099C"/>
        <gene id="585" protId="P50562" geneId="rpl18p"/>
        <gene id="587" protId="Q9HN30" geneId="pmm"/>
        <gene id="590" protId="Q9HR36" geneId="psmB"/>
        <gene id="592" protId="Q9HP48" geneId="noxA"/>
        <gene id="594" protId="Q9HNH4" geneId="citZ"/>
        <gene id="596" protId="Q9HNL8" geneId="ham1"/>
        <gene id="598" protId="Q9HRJ6" geneId="VNG_0668C"/>
        <gene id="599" protId="Q9HRH8" geneId="trp5"/>
        <gene id="600" protId="Q9HNZ9" geneId="potA2"/>
        <gene id="601" protId="Q9HMZ4" geneId="VNG_2317G"/>
        <gene id="602" protId="Q9HMG1" geneId="fepC"/>
        <gene id="603" protId="Q9HR06" geneId="potA1"/>
        <gene id="604" protId="Q9HMG6" geneId="yfmF"/>
        <gene id="605" protId="Q9HMT3" geneId="cysA"/>
        <gene id="613" protId="Q9HMW5" geneId="eif4a"/>
        <gene id="615" protId="Q9V2W4" geneId="rps13"/>
        <gene id="617" protId="Q9HP38" geneId="adh4"/>
        <gene id="619" protId="Q9HQG0" geneId="msrA"/>
        <gene id="649" protId="Q9HQR8" geneId="VNG_1035C"/>
        <gene id="651" protId="Q9HNG2" geneId="pyrE"/>
        <gene id="653" protId="Q9HRQ4" geneId="dmd"/>
        <gene id="655" protId="P15008" geneId="rpl22p"/>
        <gene id="657" protId="Q9HQ87" geneId="VNG_1276C"/>
        <gene id="659" protId="Q9HSD1" geneId="VNG_0291H"/>
        <gene id="666" protId="Q9HR16" geneId="putP"/>
        <gene id="667" protId="Q9HP63" geneId="panF"/>
        <gene id="669" protId="P48854" geneId="rps10"/>
        <gene id="672" protId="Q9HR25" geneId="udp2"/>
        <gene id="673" protId="Q9HP14" geneId="udp1"/>
        <gene id="675" protId="P61414" geneId="pth"/>
        <gene id="678" protId="Q9HNE7" geneId="atpD"/>
        <gene id="681" protId="Q9HR41" geneId="traB"/>
        <gene id="683" protId="Q9HQJ4" geneId="rpoD"/>
        <gene id="685" protId="Q9HNT1" geneId="tgtA"/>
        <gene id="687" protId="P13575" geneId="rpl1"/>
        <gene id="689" protId="Q9HR24" geneId="cda"/>
        <gene id="691" protId="O51976" geneId="VNG_6095C"/>
        <gene id="692" protId="Q9HRI0" geneId="VNG_0686C"/>
        <gene id="694" protId="Q9HMZ9" geneId="VNG_2312C"/>
        <gene id="696" protId="Q9HNP3" geneId="VNG_2008H"/>
        <gene id="698" protId="P0CX07" geneId="rpoA2"/>
        <gene id="700" protId="Q9HNK3" geneId="dgs"/>
        <gene id="702" protId="Q9HPR5" geneId="pelA"/>
        <gene id="704" protId="Q9HST5" geneId="moeB"/>
        <gene id="706" protId="Q9HR49" geneId="purL"/>
        <gene id="708" protId="Q9HN85" geneId="pmu1"/>
        <gene id="709" protId="Q9HR19" geneId="pmu2"/>
        <gene id="712" protId="O46709" geneId="trxA1_2"/>
        <gene id="714" protId="Q9HNX7" geneId="ppnK"/>
        <gene id="718" protId="O52003" geneId="hepA"/>
        <gene id="720" protId="P50558" geneId="rpl5"/>
        <gene id="722" protId="Q9HQN6" geneId="menA"/>
        <gene id="724" protId="Q9HS15" geneId="VNG_0450C"/>
        <gene id="726" protId="Q9HNQ6" geneId="pgi"/>
        <gene id="729" protId="Q9HSE2" geneId="VNG_0274C"/>
        <gene id="732" protId="Q9HQZ3" geneId="VNG_0936C"/>
        <gene id="734" protId="Q9HN64" geneId="eIF1A1"/>
        <gene id="735" protId="Q9HP87" geneId="eIF1A2"/>
        <gene id="737" protId="Q9HR32" geneId="top6A"/>
        <gene id="740" protId="Q9HQ90" geneId="VNG_1272C"/>
        <gene id="742" protId="Q9HMR2" geneId="glcD"/>
        <gene id="744" protId="Q9HPB6" geneId="rpl19e"/>
        <gene id="746" protId="Q9HRX7" geneId="cna"/>
        <gene id="748" protId="Q9HQJ3" geneId="rpl13p"/>
        <gene id="750" protId="Q9HPC2" geneId="rps4e"/>
        <gene id="752" protId="Q06847" geneId="VNG_1688C"/>
        <gene id="754" protId="Q9HNP7" geneId="VNG_2002H"/>
        <gene id="755" protId="Q9HRR8" geneId="ywaD"/>
        <gene id="757" protId="Q9HP06" geneId="cef"/>
        <gene id="759" protId="Q9HNV3" geneId="nolA"/>
        <gene id="760" protId="Q9HML4" geneId="VNG_2488C"/>
        <gene id="762" protId="Q9HSV3" geneId="VNG_0061C"/>
        <gene id="763" protId="Q9HQ44" geneId="VNG_1337C"/>
        <gene id="766" protId="Q9HRX5" geneId="yfmO1"/>
        <gene id="768" protId="Q9HNL1" geneId="rpoE'"/>
        <gene id="770" protId="Q9HMD0" geneId="trxA2"/>
        <gene id="773" protId="Q9HHV6" geneId="VNG_6208C"/>
        <gene id="775" protId="Q9HQJ1" geneId="rpoN"/>
        <gene id="777" protId="Q9HN45" geneId="pcn"/>
        <gene id="779" protId="Q9HNR3" geneId="rnhB"/>
        <gene id="781" protId="Q9HQH8" geneId="rpl7ae"/>
        <gene id="783" protId="Q9HS34" geneId="rpoM"/>
        <gene id="785" protId="Q9HRT1" geneId="VNG_0559G"/>
        <gene id="787" protId="Q9HRA5" geneId="rps3ae"/>
        <gene id="789" protId="Q9HSV4" geneId="lpg"/>
        <gene id="791" protId="Q9HNK1" geneId="VNG_2068C"/>
        <gene id="793" protId="Q9HMM5" geneId="nifU"/>
        <gene id="795" protId="Q9HRT8" geneId="eif2a"/>
        <gene id="797" protId="Q9HS61" geneId="graD1"/>
        <gene id="799" protId="Q9HNF8" geneId="ilvE2"/>
        <gene id="800" protId="Q9HS64" geneId="ilvE1"/>
        <gene id="802" protId="Q9HPS3" geneId="rpl37e"/>
        <gene id="805" protId="Q9HRF6" geneId="pepQ1"/>
        <gene id="806" protId="Q9HQC0" geneId="pepQ2"/>
        <gene id="808" protId="Q9HMR1" geneId="serB"/>
        <gene id="810" protId="Q9HP66" geneId="VNG_1782C"/>
        <gene id="812" protId="Q9HP13" geneId="suk"/>
        <gene id="813" protId="Q9HMJ3" geneId="VNG_2516C"/>
        <gene id="815" protId="Q9HNA0" geneId="hit1"/>
        <gene id="817" protId="Q9HS29" geneId="apa"/>
        <gene id="819" protId="Q9HS35" geneId="pimT2"/>
        <gene id="821" protId="Q9HS52" geneId="proS"/>
        <gene id="840" protId="Q9HNB2" geneId="rad24a"/>
        <gene id="843" protId="Q9HR08" geneId="gst"/>
        <gene id="848" protId="Q9HP28" geneId="hyrA"/>
        <gene id="850" protId="Q9HSM7" geneId="kdgK"/>
        <gene id="852" protId="Q9HN69" geneId="VNG_2227C"/>
        <gene id="854" protId="Q9HS20" geneId="rspA"/>
        <gene id="857" protId="Q9HQ12" geneId="suhB"/>
        <gene id="860" protId="Q9HMF0" geneId="rimI"/>
        <gene id="862" protId="P57710" geneId="rps28e"/>
        <gene id="864" protId="Q9HST1" geneId="pimT1"/>
        <gene id="866" protId="Q9HQD7" geneId="hutG"/>
        <gene id="867" protId="Q9HP79" geneId="speB"/>
        <gene id="884" protId="Q9HHW1" geneId="hsp5"/>
        <gene id="886" protId="Q9HPC0" geneId="rps14"/>
        <gene id="888" protId="Q9HQH3" geneId="hemK"/>
        <gene id="890" protId="Q9HP78" geneId="eif5a"/>
        <gene id="892" protId="Q9HQE3" geneId="fucA"/>
        <gene id="894" protId="P05969" geneId="rpl11p"/>
        <gene id="896" protId="Q9HQE2" geneId="VNG_1202C"/>
        <gene id="898" protId="Q9HPQ6" geneId="mutY"/>
        <gene id="900" protId="Q9HRT7" geneId="rps27e"/>
        <gene id="902" protId="Q9HSG8" geneId="rpl37ae"/>
        <gene id="904" protId="Q9HRE1" geneId="VNG_0740C"/>
        <gene id="906" protId="Q9HPC3" geneId="rpl24p"/>
        <gene id="908" protId="Q9HR47" geneId="asnA"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="H.salinarum" link="http://www.uniprot.org/taxonomy/64091"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="603"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="3">
        <score id="inparalog" value="0.439"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="0.182"/>
      </geneRef>
    </orthologGroup>
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