<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="1314" inparalogs="4047"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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        <gene id="3938" protId="G0NS15" geneId="CAEBREN_04369"/>
        <gene id="3939" protId="G0PFD3" geneId="CAEBREN_22538"/>
        <gene id="3941" protId="G0MVH9" geneId="Cbn-cap-2"/>
        <gene id="3943" protId="G0MUZ1" geneId="CAEBREN_06597"/>
        <gene id="3944" protId="G0MV29" geneId="CAEBREN_18972"/>
        <gene id="3945" protId="G0P031" geneId="CAEBREN_02698"/>
        <gene id="3946" protId="G0MV01" geneId="CAEBREN_26092"/>
        <gene id="3947" protId="G0MYJ8" geneId="CAEBREN_00624"/>
        <gene id="3948" protId="G0MUW2" geneId="CAEBREN_16554"/>
        <gene id="3949" protId="G0MUZ8" geneId="CAEBREN_25218"/>
        <gene id="3951" protId="G0MMA7" geneId="CAEBREN_12442"/>
        <gene id="3952" protId="G0MX06" geneId="CAEBREN_04892"/>
        <gene id="3954" protId="G0NWH4" geneId="CAEBREN_16752"/>
        <gene id="3956" protId="G0PLE6" geneId="CAEBREN_02200"/>
        <gene id="3957" protId="G0P5M4" geneId="CAEBREN_08611"/>
        <gene id="3959" protId="G0N6N2" geneId="CAEBREN_02760"/>
        <gene id="3961" protId="G0N7N3" geneId="Cbn-ncs-1"/>
        <gene id="3962" protId="G0N7P4" geneId="Cbn-ncs-3"/>
        <gene id="3963" protId="G0MFI7" geneId="CAEBREN_07999"/>
        <gene id="3964" protId="G0MHU3" geneId="CAEBREN_25887"/>
        <gene id="3965" protId="G0P6N0" geneId="CAEBREN_13533"/>
        <gene id="3966" protId="G0PGC7" geneId="CAEBREN_10686"/>
        <gene id="3968" protId="G0PE17" geneId="coq-4"/>
        <gene id="3970" protId="G0NIY9" geneId="CAEBREN_07415"/>
        <gene id="3971" protId="G0NIY8" geneId="CAEBREN_14301"/>
        <gene id="3972" protId="G0MTW0" geneId="CAEBREN_07847"/>
        <gene id="3973" protId="G0M9Z2" geneId="CAEBREN_21360"/>
        <gene id="3975" protId="G0MGW7" geneId="Cbn-memb-1"/>
        <gene id="3976" protId="G0MXG1" geneId="Cbn-memb-2"/>
        <gene id="3978" protId="G0N0X2" geneId="CAEBREN_04194"/>
        <gene id="3979" protId="G0MMU0" geneId="CAEBREN_12304"/>
        <gene id="3981" protId="G0P0X4" geneId="Cbn-trap-1"/>
        <gene id="3983" protId="G0MMB4" geneId="CAEBREN_16058"/>
        <gene id="3984" protId="G0P882" geneId="CAEBREN_24713"/>
        <gene id="3985" protId="G0PB91" geneId="CAEBREN_03637"/>
        <gene id="3986" protId="G0MLY6" geneId="CAEBREN_16237"/>
        <gene id="3987" protId="G0PB90" geneId="CAEBREN_29040"/>
        <gene id="3988" protId="G0MLY7" geneId="CAEBREN_16528"/>
        <gene id="3990" protId="G0N427" geneId="Cbn-ctg-2"/>
        <gene id="3991" protId="G0M7Q5" geneId="Cbn-cgr-1"/>
        <gene id="3992" protId="G0MRT5" geneId="CAEBREN_00109"/>
        <gene id="3993" protId="G0PGQ9" geneId="CAEBREN_16655"/>
        <gene id="3995" protId="G0N5G2" geneId="CAEBREN_03873"/>
        <gene id="3999" protId="G0NCG1" geneId="CAEBREN_09784"/>
        <gene id="4000" protId="G0NCE4" geneId="CAEBREN_14640"/>
        <gene id="4002" protId="G0NRU9" geneId="CAEBREN_16812"/>
        <gene id="4004" protId="G0NWU9" geneId="CAEBREN_20034"/>
        <gene id="4005" protId="G0NFR5" geneId="CAEBREN_29210"/>
        <gene id="4006" protId="G0NGZ6" geneId="CAEBREN_17739"/>
        <gene id="4007" protId="G0PIC0" geneId="CAEBREN_14658"/>
        <gene id="4008" protId="G0N971" geneId="CAEBREN_14219"/>
        <gene id="4010" protId="G0P8P4" geneId="CAEBREN_25152"/>
        <gene id="4011" protId="G0MF13" geneId="CAEBREN_02415"/>
        <gene id="4013" protId="G0NDL8" geneId="CAEBREN_15309"/>
        <gene id="4015" protId="G0P3Z9" geneId="Cbn-rabn-5"/>
        <gene id="4017" protId="G0MJI0" geneId="CAEBREN_32765"/>
        <gene id="4018" protId="G0MJH8" geneId="CAEBREN_25370"/>
        <gene id="4019" protId="G0MJH9" geneId="CAEBREN_17403"/>
        <gene id="4020" protId="G0MJI1" geneId="Cbn-acox-1"/>
        <gene id="4021" protId="G0MH30" geneId="CAEBREN_09165"/>
        <gene id="4022" protId="G0MK68" geneId="CAEBREN_22935"/>
        <gene id="4023" protId="G0MYK6" geneId="CAEBREN_32122"/>
        <gene id="4024" protId="G0N9Z7" geneId="CAEBREN_14302"/>
        <gene id="4025" protId="G0NW37" geneId="CAEBREN_26277"/>
        <gene id="4027" protId="G0NGB2" geneId="CAEBREN_16301"/>
        <gene id="4028" protId="G0PCH4" geneId="CAEBREN_00953"/>
        <gene id="4029" protId="G0MEZ8" geneId="CAEBREN_10290"/>
        <gene id="4031" protId="G0MNS1" geneId="CAEBREN_31350"/>
        <gene id="4033" protId="G0P0W9" geneId="Cbn-dnc-5"/>
        <gene id="4035" protId="G0PG52" geneId="CAEBREN_30758"/>
        <gene id="4037" protId="G0PGG8" geneId="CAEBREN_09593"/>
        <gene id="4038" protId="G0MP16" geneId="CAEBREN_22714"/>
        <gene id="4040" protId="G0MI30" geneId="CAEBREN_04265"/>
        <gene id="4042" protId="G0MFD6" geneId="CAEBREN_04607"/>
        <gene id="4043" protId="G0P1T9" geneId="CAEBREN_32406"/>
        <gene id="4045" protId="G0NJS9" geneId="CAEBREN_02889"/>
        <gene id="4046" protId="G0PLS0" geneId="CAEBREN_00394"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Trypanosoma cruzi " NCBITaxId="5693">
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        <gene id="7" protId="K4E050" geneId="TCSYLVIO_004938"/>
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        <gene id="12" protId="K4E8G4" geneId="TCSYLVIO_002090"/>
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        <gene id="20" protId="K4DSZ3" geneId="TCSYLVIO_007523"/>
        <gene id="23" protId="K4DM24" geneId="TCSYLVIO_009936"/>
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        <gene id="3994" protId="K4DTQ0" geneId="TCSYLVIO_007488"/>
        <gene id="3996" protId="K4DKB2" geneId="TCSYLVIO_010363"/>
        <gene id="3997" protId="K4E381" geneId="TCSYLVIO_003937"/>
        <gene id="3998" protId="K4DU29" geneId="TCSYLVIO_007207"/>
        <gene id="4001" protId="K4E598" geneId="TCSYLVIO_003084"/>
        <gene id="4003" protId="K4DTY9" geneId="TCSYLVIO_007425"/>
        <gene id="4009" protId="K4E9S4" geneId="TCSYLVIO_001928"/>
        <gene id="4012" protId="K4E2J3" geneId="TCSYLVIO_004185"/>
        <gene id="4014" protId="K4DX01" geneId="TCSYLVIO_006086"/>
        <gene id="4016" protId="K4DYL0" geneId="TCSYLVIO_005734"/>
        <gene id="4026" protId="K4EDS5" geneId="TCSYLVIO_000464"/>
        <gene id="4030" protId="K4E5B9" geneId="TCSYLVIO_003549"/>
        <gene id="4032" protId="K4DU74" geneId="TCSYLVIO_007314"/>
        <gene id="4034" protId="K4E6H4" geneId="TCSYLVIO_003127"/>
        <gene id="4036" protId="K4EAS8" geneId="TCSYLVIO_001559"/>
        <gene id="4039" protId="K4E9P5" geneId="TCSYLVIO_001957"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.cruzi" link="http://www.uniprot.org/taxonomy/5693"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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