<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="620" inparalogs="1890"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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        <gene id="1868" protId="G0PJN0" geneId="Cbn-his-53"/>
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        <gene id="1870" protId="G0NDA2" geneId="CAEBREN_16022"/>
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        <gene id="1874" protId="G0P7S4" geneId="Cbn-rpl-14"/>
        <gene id="1876" protId="G0N4G7" geneId="CAEBREN_12564"/>
        <gene id="1877" protId="G0N4G9" geneId="CAEBREN_24404"/>
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        <gene id="1880" protId="G0PMC1" geneId="CAEBREN_23318"/>
        <gene id="1881" protId="G0NGW4" geneId="Cbn-snr-4"/>
        <gene id="1883" protId="G0MKV0" geneId="CAEBREN_10413"/>
        <gene id="1885" protId="G0PL05" geneId="CAEBREN_12379"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Edhazardia aedis" NCBITaxId="1003232">
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    </database>
    <notes>
      <additionalInformation abbreviation="E.aedis" link="http://www.uniprot.org/taxonomy/1003232"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="867"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="0.731"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.999"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.71"/>
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        <score id="inparalog" value="0.869"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.94"/>
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        <score id="inparalog" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.529"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.994"/>
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      <geneRef id="39">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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