<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="379" inparalogs="1375"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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        <gene id="1244" protId="G0P4U8" geneId="Cbn-coq-3"/>
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        <gene id="1349" protId="G0N7Y0" geneId="Cbn-ral-1"/>
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        <gene id="1357" protId="G0N8W0" geneId="CAEBREN_26324"/>
        <gene id="1358" protId="G0PF62" geneId="CAEBREN_23292"/>
        <gene id="1359" protId="G0MUT8" geneId="Cbn-ras-1"/>
        <gene id="1360" protId="G0PMX8" geneId="CAEBREN_06624"/>
        <gene id="1362" protId="G0MKV3" geneId="Cbn-sip-1"/>
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        <gene id="1364" protId="G0NU08" geneId="CAEBREN_01299"/>
        <gene id="1365" protId="G0NU10" geneId="CAEBREN_02236"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Deinococcus radiodurans " NCBITaxId="243230">
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    </database>
    <notes>
      <additionalInformation abbreviation="D.radiodurans" link="http://www.uniprot.org/taxonomy/243230"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="0.888"/>
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        <score id="inparalog" value="0.185"/>
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      <geneRef id="6">
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      <score id="bit" value="1049"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.978"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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