<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="448" inparalogs="1243"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="3" protId="A9WHJ8" geneId="Caur_3126"/>
        <gene id="4" protId="A9WIG6" geneId="Caur_1034"/>
        <gene id="6" protId="A9WFV9" geneId="dnaK"/>
        <gene id="8" protId="A9WBV3" geneId="sucA"/>
        <gene id="10" protId="A9WJF0" geneId="valS"/>
        <gene id="12" protId="A9WH07" geneId="Caur_0869"/>
        <gene id="15" protId="A9WJJ3" geneId="ileS"/>
        <gene id="17" protId="A9WIK5" geneId="Caur_1073"/>
        <gene id="21" protId="A9WGS4" geneId="atpD"/>
        <gene id="23" protId="A9WJZ0" geneId="Caur_1212"/>
        <gene id="25" protId="A9WH62" geneId="fusA"/>
        <gene id="27" protId="A9WF68" geneId="ilvD"/>
        <gene id="29" protId="A9WCR2" geneId="alaS"/>
        <gene id="31" protId="A9WG14" geneId="Caur_2969"/>
        <gene id="33" protId="A9WFP3" geneId="tuf1"/>
        <gene id="35" protId="A9WAN3" geneId="Caur_0003"/>
        <gene id="38" protId="A9WJN7" geneId="groL1"/>
        <gene id="39" protId="A9WFA3" geneId="groL2"/>
        <gene id="41" protId="A9WD77" geneId="Caur_1827"/>
        <gene id="43" protId="A9WC29" geneId="leuC"/>
        <gene id="45" protId="A9WHT7" geneId="guaA"/>
        <gene id="47" protId="A9WIW3" geneId="fhs"/>
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        <gene id="52" protId="A9WGS6" geneId="atpA"/>
        <gene id="54" protId="A9WIR4" geneId="Caur_2585"/>
        <gene id="56" protId="A9WKM7" geneId="Caur_3471"/>
        <gene id="58" protId="A9W9X0" geneId="Caur_1378"/>
        <gene id="59" protId="A9WKF5" geneId="Caur_2832"/>
        <gene id="60" protId="A9WKH8" geneId="Caur_3421"/>
        <gene id="62" protId="A9W9W7" geneId="Caur_1375"/>
        <gene id="64" protId="A9WEJ0" geneId="ftsH"/>
        <gene id="67" protId="A9WGB5" geneId="lon"/>
        <gene id="69" protId="A9WCM4" geneId="eno"/>
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        <gene id="73" protId="A9WGQ3" geneId="metK"/>
        <gene id="75" protId="A9WC24" geneId="Caur_0163"/>
        <gene id="77" protId="A9WER4" geneId="Caur_0578"/>
        <gene id="79" protId="A9WJR8" geneId="argH"/>
        <gene id="81" protId="A9WKL7" geneId="mnmG"/>
        <gene id="83" protId="A9WFB4" geneId="nuoD2"/>
        <gene id="85" protId="A9WGP6" geneId="infB"/>
        <gene id="87" protId="A9WJQ6" geneId="Caur_3336"/>
        <gene id="91" protId="A9WD10" geneId="Caur_0328"/>
        <gene id="94" protId="A9WFT9" geneId="pdxS"/>
        <gene id="96" protId="A9WJD3" geneId="htpG"/>
        <gene id="98" protId="A9WA77" geneId="Caur_1408"/>
        <gene id="100" protId="A9WEM2" geneId="Caur_2840"/>
        <gene id="102" protId="A9WJX4" geneId="thrS"/>
        <gene id="104" protId="A9WF10" geneId="Caur_2113"/>
        <gene id="106" protId="A9WAB2" geneId="Caur_1443"/>
        <gene id="109" protId="A9WK84" geneId="leuS"/>
        <gene id="111" protId="A9W9Q2" geneId="proS"/>
        <gene id="113" protId="A9WJ21" geneId="glpK"/>
        <gene id="115" protId="A9WI58" geneId="glyA"/>
        <gene id="118" protId="A9WKE4" geneId="pgk"/>
        <gene id="120" protId="A9WE89" geneId="Caur_0501"/>
        <gene id="122" protId="A9WCJ3" geneId="Caur_1767"/>
        <gene id="125" protId="A9WK04" geneId="lysS"/>
        <gene id="127" protId="A9WAX8" geneId="Caur_1540"/>
        <gene id="129" protId="A9WH11" geneId="rpoC"/>
        <gene id="132" protId="A9WEU7" geneId="guaB"/>
        <gene id="135" protId="A9WE22" geneId="Caur_1966"/>
        <gene id="138" protId="A9WJH8" geneId="Caur_2677"/>
        <gene id="140" protId="A9WF95" geneId="Caur_2878"/>
        <gene id="141" protId="A9WCD5" geneId="Caur_1709"/>
        <gene id="142" protId="A9WCD6" geneId="Caur_1710"/>
        <gene id="143" protId="A9WEZ0" geneId="Caur_2093"/>
        <gene id="146" protId="A9WKM1" geneId="metG"/>
        <gene id="148" protId="A9WFB7" geneId="Caur_2902"/>
        <gene id="150" protId="A9WGQ4" geneId="ahcY"/>
        <gene id="152" protId="A9WAR7" geneId="leuB"/>
        <gene id="154" protId="A9WHK0" geneId="Caur_3128"/>
        <gene id="156" protId="A9WEJ5" geneId="Caur_2045"/>
        <gene id="158" protId="A9WDZ7" geneId="purA"/>
        <gene id="160" protId="A9WJ70" geneId="Caur_1116"/>
        <gene id="161" protId="A9WDY7" geneId="Caur_1931"/>
        <gene id="163" protId="A9WI34" geneId="aroC"/>
        <gene id="165" protId="A9WE29" geneId="Caur_1973"/>
        <gene id="167" protId="A9WDE7" geneId="Caur_3889"/>
        <gene id="169" protId="A9WGJ7" geneId="aspS"/>
        <gene id="171" protId="A9WBV5" geneId="Caur_3729"/>
        <gene id="174" protId="A9WJS0" geneId="argJ"/>
        <gene id="176" protId="A9WHF7" geneId="Caur_3084"/>
        <gene id="179" protId="A9WEW0" geneId="purD"/>
        <gene id="181" protId="A9WFZ9" geneId="mutS"/>
        <gene id="183" protId="A9WFK3" geneId="Caur_0702"/>
        <gene id="185" protId="A9WDV3" geneId="Caur_1897"/>
        <gene id="187" protId="A9WIB9" geneId="Caur_3220"/>
        <gene id="188" protId="A9WAD0" geneId="Caur_1461"/>
        <gene id="191" protId="A9WE57" geneId="glmS"/>
        <gene id="193" protId="A9WEL6" geneId="Caur_2066"/>
        <gene id="195" protId="A9W9P7" geneId="Caur_1305"/>
        <gene id="196" protId="A9WD84" geneId="Caur_1834"/>
        <gene id="198" protId="A9WBV2" geneId="Caur_3726"/>
        <gene id="199" protId="A9WCB7" geneId="Caur_1691"/>
        <gene id="201" protId="A9WAX3" geneId="gltX"/>
        <gene id="203" protId="A9WBL2" geneId="Caur_1601"/>
        <gene id="205" protId="A9WEK8" geneId="purH"/>
        <gene id="207" protId="A9WC77" geneId="Caur_0217"/>
        <gene id="209" protId="A9WD90" geneId="cysS"/>
        <gene id="211" protId="A9WEH7" geneId="argS"/>
        <gene id="213" protId="A9WII1" geneId="Caur_1049"/>
        <gene id="216" protId="A9WGJ1" geneId="Caur_2314"/>
        <gene id="218" protId="A9WCD8" geneId="gatA"/>
        <gene id="220" protId="A9WE30" geneId="Caur_1974"/>
        <gene id="222" protId="A9WD44" geneId="Caur_1794"/>
        <gene id="224" protId="A9W9Z4" geneId="Caur_3492"/>
        <gene id="226" protId="A9WJD1" geneId="Caur_1178"/>
        <gene id="228" protId="A9WBM7" geneId="proA"/>
        <gene id="230" protId="A9WEM1" geneId="lipA"/>
        <gene id="232" protId="A9WFB6" geneId="Caur_2901"/>
        <gene id="233" protId="A9WJD8" geneId="Caur_1185"/>
        <gene id="235" protId="A9WKB9" geneId="Caur_2796"/>
        <gene id="237" protId="A9WEY1" geneId="Caur_2084"/>
        <gene id="239" protId="A9WIS8" geneId="Caur_2599"/>
        <gene id="241" protId="A9WJ74" geneId="sucC"/>
        <gene id="243" protId="A9WEI6" geneId="psuG"/>
        <gene id="245" protId="A9WK27" geneId="Caur_1250"/>
        <gene id="251" protId="A9WA07" geneId="Caur_3505"/>
        <gene id="253" protId="A9WA70" geneId="Caur_1401"/>
        <gene id="255" protId="A9WAJ8" geneId="Caur_3604"/>
        <gene id="259" protId="A9W9T3" geneId="Caur_1341"/>
        <gene id="261" protId="A9WA97" geneId="asnS"/>
        <gene id="263" protId="A9WFD8" geneId="smc"/>
        <gene id="265" protId="A9WEX0" geneId="dnaJ"/>
        <gene id="267" protId="A9WKM8" geneId="metX"/>
        <gene id="269" protId="A9WIS5" geneId="Caur_2596"/>
        <gene id="271" protId="A9WE79" geneId="prfA"/>
        <gene id="273" protId="A9WEA4" geneId="Caur_0517"/>
        <gene id="277" protId="A9WDV1" geneId="Caur_1895"/>
        <gene id="279" protId="A9WEK2" geneId="ffh"/>
        <gene id="281" protId="A9WFR7" geneId="panB"/>
        <gene id="283" protId="A9WG15" geneId="gatB"/>
        <gene id="285" protId="A9WAL0" geneId="mtnP"/>
        <gene id="287" protId="A9WAX6" geneId="Caur_1538"/>
        <gene id="289" protId="A9WA78" geneId="trpS"/>
        <gene id="291" protId="A9WAB8" geneId="Caur_1449"/>
        <gene id="293" protId="A9WFR6" geneId="panC"/>
        <gene id="295" protId="A9WK62" geneId="obg"/>
        <gene id="297" protId="A9WHM1" geneId="Caur_3150"/>
        <gene id="300" protId="A9WEY3" geneId="Caur_2086"/>
        <gene id="301" protId="A9WGN8" geneId="Caur_3005"/>
        <gene id="303" protId="A9WFI5" geneId="trpA"/>
        <gene id="305" protId="A9WH12" geneId="rpoB"/>
        <gene id="309" protId="A9WC90" geneId="Caur_0230"/>
        <gene id="311" protId="A9WDI1" geneId="pyrD"/>
        <gene id="313" protId="A9WHN0" geneId="Caur_3160"/>
        <gene id="315" protId="A9WH03" geneId="carA"/>
        <gene id="317" protId="A9WI03" geneId="glyQS"/>
        <gene id="319" protId="A9WKD2" geneId="Caur_2809"/>
        <gene id="322" protId="A9W9Z9" geneId="gcvT"/>
        <gene id="324" protId="A9WE28" geneId="Caur_1972"/>
        <gene id="326" protId="A9WK17" geneId="Caur_1239"/>
        <gene id="328" protId="A9WJ86" geneId="mutL"/>
        <gene id="330" protId="A9WJU2" geneId="Caur_3373"/>
        <gene id="331" protId="A9WHK7" geneId="Caur_3136"/>
        <gene id="335" protId="A9WCW3" geneId="Caur_0280"/>
        <gene id="337" protId="A9WAX2" geneId="proB"/>
        <gene id="339" protId="A9WE34" geneId="serS"/>
        <gene id="341" protId="A9WGC3" geneId="Caur_0806"/>
        <gene id="343" protId="A9WGE1" geneId="Caur_2264"/>
        <gene id="346" protId="A9WB17" geneId="arcB"/>
        <gene id="348" protId="A9WF29" geneId="Caur_2132"/>
        <gene id="349" protId="A9WF31" geneId="Caur_2134"/>
        <gene id="350" protId="A9WJ98" geneId="Caur_1145"/>
        <gene id="351" protId="A9WFI0" geneId="Caur_0678"/>
        <gene id="354" protId="A9WII8" geneId="nfo"/>
        <gene id="356" protId="A9WCE4" geneId="argD"/>
        <gene id="357" protId="A9WJT1" geneId="Caur_3362"/>
        <gene id="359" protId="A9WIX0" geneId="folE"/>
        <gene id="361" protId="A9WCH6" geneId="Caur_1750"/>
        <gene id="364" protId="A9WH69" geneId="rplB"/>
        <gene id="366" protId="A9WE20" geneId="Caur_1964"/>
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        <gene id="380" protId="A9WKE3" geneId="mnmE"/>
        <gene id="382" protId="A9WHW6" geneId="Caur_1002"/>
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        <gene id="400" protId="P96744" geneId="tpiA"/>
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        <gene id="430" protId="A9WDY8" geneId="hisC"/>
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    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
  </species>
  <species name="Meyerozyma guilliermondii " NCBITaxId="294746">
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    </database>
    <notes>
      <additionalInformation abbreviation="M.guilliermondii" link="http://www.uniprot.org/taxonomy/294746"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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