<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="514" inparalogs="1601"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="A9WHM1" geneId="Caur_3150"/>
        <gene id="6" protId="A9WCJ8" geneId="carB"/>
        <gene id="9" protId="A9WFV9" geneId="dnaK"/>
        <gene id="11" protId="A9WH07" geneId="Caur_0869"/>
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        <gene id="17" protId="A9WEI4" geneId="Caur_2034"/>
        <gene id="19" protId="A9WJJ3" geneId="ileS"/>
        <gene id="21" protId="A9WGU4" geneId="lepA"/>
        <gene id="23" protId="A9WGK8" geneId="pckG"/>
        <gene id="26" protId="A9WH57" geneId="Caur_2360"/>
        <gene id="28" protId="A9WAN3" geneId="Caur_0003"/>
        <gene id="30" protId="A9WBV3" geneId="sucA"/>
        <gene id="33" protId="A9WJZ0" geneId="Caur_1212"/>
        <gene id="36" protId="A9WGB5" geneId="lon"/>
        <gene id="38" protId="A9WH62" geneId="fusA"/>
        <gene id="40" protId="A9WGS4" geneId="atpD"/>
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        <gene id="47" protId="A9WER4" geneId="Caur_0578"/>
        <gene id="50" protId="A9WKF5" geneId="Caur_2832"/>
        <gene id="52" protId="A9WJN7" geneId="groL1"/>
        <gene id="53" protId="A9WFA3" geneId="groL2"/>
        <gene id="55" protId="A9WDH2" geneId="Caur_3914"/>
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        <gene id="59" protId="A9WIW3" geneId="fhs"/>
        <gene id="62" protId="A9WJ21" geneId="glpK"/>
        <gene id="65" protId="A9WK84" geneId="leuS"/>
        <gene id="67" protId="A9W9X0" geneId="Caur_1378"/>
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        <gene id="73" protId="A9WFP3" geneId="tuf1"/>
        <gene id="75" protId="A9WBL2" geneId="Caur_1601"/>
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        <gene id="79" protId="A9WGJ7" geneId="aspS"/>
        <gene id="81" protId="A9WKL7" geneId="mnmG"/>
        <gene id="83" protId="A9W9W7" geneId="Caur_1375"/>
        <gene id="85" protId="A9WA30" geneId="Caur_3528"/>
        <gene id="88" protId="A9WEJ0" geneId="ftsH"/>
        <gene id="92" protId="A9WCM4" geneId="eno"/>
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        <gene id="98" protId="A9WBL0" geneId="Caur_1599"/>
        <gene id="100" protId="A9WGQ3" geneId="metK"/>
        <gene id="103" protId="A9WJD3" geneId="htpG"/>
        <gene id="108" protId="A9W9U8" geneId="Caur_1356"/>
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        <gene id="114" protId="A9WF39" geneId="Caur_2142"/>
        <gene id="116" protId="A9WE57" geneId="glmS"/>
        <gene id="119" protId="A9WEJ7" geneId="pnp"/>
        <gene id="121" protId="A9WDR5" geneId="Caur_0421"/>
        <gene id="123" protId="A9WHT8" geneId="hutH"/>
        <gene id="125" protId="A9WFB4" geneId="nuoD2"/>
        <gene id="127" protId="A9WJQ6" geneId="Caur_3336"/>
        <gene id="138" protId="A9WAB2" geneId="Caur_1443"/>
        <gene id="140" protId="A9WJX4" geneId="thrS"/>
        <gene id="144" protId="A9WI27" geneId="Caur_2512"/>
        <gene id="146" protId="A9WKM1" geneId="metG"/>
        <gene id="148" protId="A9WI58" geneId="glyA"/>
        <gene id="151" protId="A9WKE4" geneId="pgk"/>
        <gene id="154" protId="A9WJZ5" geneId="Caur_1217"/>
        <gene id="156" protId="A9WK04" geneId="lysS"/>
        <gene id="158" protId="A9WFB6" geneId="Caur_2901"/>
        <gene id="160" protId="A9WDV3" geneId="Caur_1897"/>
        <gene id="163" protId="A9WKK4" geneId="Caur_3447"/>
        <gene id="165" protId="A9WEM4" geneId="Caur_2842"/>
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        <gene id="170" protId="A9WCD8" geneId="gatA"/>
        <gene id="172" protId="A9WE89" geneId="Caur_0501"/>
        <gene id="174" protId="A9WEU7" geneId="guaB"/>
        <gene id="177" protId="A9WDY7" geneId="Caur_1931"/>
        <gene id="178" protId="A9WJ70" geneId="Caur_1116"/>
        <gene id="180" protId="A9WEM2" geneId="Caur_2840"/>
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        <gene id="187" protId="A9WAD0" geneId="Caur_1461"/>
        <gene id="189" protId="A9W9Z4" geneId="Caur_3492"/>
        <gene id="191" protId="A9WAB8" geneId="Caur_1449"/>
        <gene id="194" protId="A9WFK3" geneId="Caur_0702"/>
        <gene id="196" protId="A9WE29" geneId="Caur_1973"/>
        <gene id="198" protId="A9WGP6" geneId="infB"/>
        <gene id="200" protId="A9WE30" geneId="Caur_1974"/>
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        <gene id="220" protId="A9WGC3" geneId="Caur_0806"/>
        <gene id="222" protId="A9WFB7" geneId="Caur_2902"/>
        <gene id="224" protId="A9WDZ7" geneId="purA"/>
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        <gene id="229" protId="A9WH11" geneId="rpoC"/>
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        <gene id="234" protId="A9WCR0" geneId="Caur_3845"/>
        <gene id="236" protId="A9WG09" geneId="Caur_2964"/>
        <gene id="238" protId="A9WFZ9" geneId="mutS"/>
        <gene id="240" protId="A9WEM0" geneId="Caur_2070"/>
        <gene id="241" protId="A9WCC4" geneId="Caur_1698"/>
        <gene id="243" protId="A9WII1" geneId="Caur_1049"/>
        <gene id="247" protId="A9WGQ4" geneId="ahcY"/>
        <gene id="250" protId="A9WHF7" geneId="Caur_3084"/>
        <gene id="254" protId="A9WDV1" geneId="Caur_1895"/>
        <gene id="257" protId="A9WJ74" geneId="sucC"/>
        <gene id="260" protId="A9WFC2" geneId="Caur_2907"/>
        <gene id="261" protId="A9WED2" geneId="Caur_1979"/>
        <gene id="263" protId="A9WEY1" geneId="Caur_2084"/>
        <gene id="265" protId="A9WCB8" geneId="Caur_1692"/>
        <gene id="266" protId="A9WHJ5" geneId="Caur_3122"/>
        <gene id="267" protId="A9W9S6" geneId="Caur_1334"/>
        <gene id="269" protId="A9WC90" geneId="Caur_0230"/>
        <gene id="271" protId="A9WBV5" geneId="Caur_3729"/>
        <gene id="272" protId="A9WAP0" geneId="Caur_0010"/>
        <gene id="276" protId="A9WEK8" geneId="purH"/>
        <gene id="278" protId="A9WI22" geneId="Caur_2507"/>
        <gene id="280" protId="A9WF01" geneId="Caur_2104"/>
        <gene id="282" protId="A9WEM1" geneId="lipA"/>
        <gene id="284" protId="A9WF67" geneId="Caur_2850"/>
        <gene id="286" protId="A9WD90" geneId="cysS"/>
        <gene id="288" protId="A9WIS8" geneId="Caur_2599"/>
        <gene id="290" protId="A9WA78" geneId="trpS"/>
        <gene id="292" protId="A9WBV8" geneId="tgt"/>
        <gene id="294" protId="A9WJQ9" geneId="pepA"/>
        <gene id="296" protId="A9W9S9" geneId="Caur_1337"/>
        <gene id="298" protId="A9WE79" geneId="prfA"/>
        <gene id="301" protId="A9WK62" geneId="obg"/>
        <gene id="303" protId="A9WJ58" geneId="Caur_1104"/>
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        <gene id="309" protId="A9WJD1" geneId="Caur_1178"/>
        <gene id="311" protId="A9WJZ9" geneId="Caur_1221"/>
        <gene id="314" protId="A9WBE8" geneId="Caur_0101"/>
        <gene id="316" protId="A9WFX1" geneId="Caur_2926"/>
        <gene id="318" protId="A9WHT7" geneId="guaA"/>
        <gene id="320" protId="A9WFD8" geneId="smc"/>
        <gene id="322" protId="A9WJ72" geneId="Caur_1119"/>
        <gene id="324" protId="A9WEH7" geneId="argS"/>
        <gene id="326" protId="A9WAX3" geneId="gltX"/>
        <gene id="328" protId="A9WAC7" geneId="Caur_1458"/>
        <gene id="330" protId="A9WIL6" geneId="Caur_1085"/>
        <gene id="333" protId="A9WGU9" geneId="Caur_3066"/>
        <gene id="337" protId="A9WKC5" geneId="Caur_2802"/>
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        <gene id="345" protId="A9WEK2" geneId="ffh"/>
        <gene id="347" protId="A9WIK4" geneId="Caur_1072"/>
        <gene id="348" protId="A9WFH5" geneId="Caur_0673"/>
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        <gene id="354" protId="A9WGI9" geneId="Caur_2312"/>
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        <gene id="360" protId="A9WDL5" geneId="Caur_0371"/>
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        <gene id="369" protId="A9WB97" geneId="galK"/>
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        <gene id="372" protId="A9WAM1" geneId="Caur_3628"/>
        <gene id="373" protId="A9WEJ4" geneId="Caur_2044"/>
        <gene id="375" protId="A9WB17" geneId="arcB"/>
        <gene id="377" protId="A9WBM7" geneId="proA"/>
        <gene id="379" protId="A9WA97" geneId="asnS"/>
        <gene id="381" protId="A9WA07" geneId="Caur_3505"/>
        <gene id="384" protId="A9WBT6" geneId="ldh"/>
        <gene id="389" protId="A9WHT9" geneId="hutI"/>
        <gene id="391" protId="A9WIZ0" geneId="Caur_3261"/>
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        <gene id="397" protId="A9W9S7" geneId="Caur_1335"/>
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        <gene id="402" protId="A9WGN8" geneId="Caur_3005"/>
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        <gene id="1587" protId="A9WHH9" geneId="der"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
  </species>
  <species name="Loxodonta africana " NCBITaxId="9785">
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    <notes>
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