<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2379" inparalogs="5412"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Batrachochytrium dendrobatidis " NCBITaxId="684364">
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    <notes>
      <additionalInformation abbreviation="B.dendrobatidis" link="http://www.uniprot.org/taxonomy/684364"/>
    </notes>
  </species>
  <species name="Danaus plexippus " NCBITaxId="13037">
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    </database>
    <notes>
      <additionalInformation abbreviation="D.plexippus" link="http://www.uniprot.org/taxonomy/13037"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
      </geneRef>
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      <score id="bit" value="3798"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="3788"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="7">
        <score id="inparalog" value="0.071"/>
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      <score id="bit" value="3618"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="9">
        <score id="inparalog" value="0.1"/>
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      <geneRef id="10">
        <score id="inparalog" value="0.075"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.9"/>
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      <score id="bit" value="3600"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="3447"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="7">
      <score id="bit" value="3259"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="8">
      <score id="bit" value="3018"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="9">
      <score id="bit" value="2149"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="2142"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="11">
      <score id="bit" value="2056"/>
      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="25">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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