<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="379" inparalogs="1053"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Amphimedon queenslandica " NCBITaxId="400682">
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        <gene id="958" protId="I1G237" geneId="LOC100637248"/>
        <gene id="959" protId="I1EKP4" geneId="LOC100636224"/>
        <gene id="960" protId="I1EU46" geneId="LOC100633609"/>
        <gene id="962" protId="I1FYT2" geneId="LOC100633169"/>
        <gene id="964" protId="I1FP32" geneId="uncharacterized_I1FP32"/>
        <gene id="965" protId="I1FP35" geneId="uncharacterized_I1FP35"/>
        <gene id="966" protId="I1FP31" geneId="uncharacterized_I1FP31"/>
        <gene id="967" protId="I1EDQ7" geneId="uncharacterized_I1EDQ7"/>
        <gene id="968" protId="I1FP34" geneId="uncharacterized_I1FP34"/>
        <gene id="970" protId="I1E7J5" geneId="LOC100635250"/>
        <gene id="973" protId="I1FNN0" geneId="LOC100633640"/>
        <gene id="974" protId="I1FK76" geneId="uncharacterized_I1FK76"/>
        <gene id="976" protId="I1G4I7" geneId="uncharacterized_I1G4I7"/>
        <gene id="977" protId="I1FC04" geneId="uncharacterized_I1FC04"/>
        <gene id="979" protId="I1FUX9" geneId="LOC100637632"/>
        <gene id="981" protId="I1EE82" geneId="uncharacterized_I1EE82"/>
        <gene id="982" protId="I1FXG5" geneId="LOC100641759"/>
        <gene id="984" protId="I1EW42" geneId="LOC100631713"/>
        <gene id="985" protId="I1EHL5" geneId="LOC100636853"/>
        <gene id="987" protId="I1FK75" geneId="LOC100638814"/>
        <gene id="988" protId="I1FK77" geneId="LOC100638941"/>
        <gene id="990" protId="I1F9Q5" geneId="uncharacterized_I1F9Q5"/>
        <gene id="992" protId="I1FAA0" geneId="uncharacterized_I1FAA0"/>
        <gene id="993" protId="I1FAA2" geneId="uncharacterized_I1FAA2"/>
        <gene id="994" protId="I1F7R3" geneId="uncharacterized_I1F7R3"/>
        <gene id="995" protId="I1G9U8" geneId="uncharacterized_I1G9U8"/>
        <gene id="996" protId="I1FYM7" geneId="uncharacterized_I1FYM7"/>
        <gene id="997" protId="I1F139" geneId="LOC100636505"/>
        <gene id="998" protId="I1F138" geneId="uncharacterized_I1F138"/>
        <gene id="999" protId="I1EFZ7" geneId="uncharacterized_I1EFZ7"/>
        <gene id="1000" protId="I1F142" geneId="uncharacterized_I1F142"/>
        <gene id="1001" protId="I1G5R2" geneId="uncharacterized_I1G5R2"/>
        <gene id="1002" protId="I1G920" geneId="uncharacterized_I1G920"/>
        <gene id="1003" protId="I1G921" geneId="uncharacterized_I1G921"/>
        <gene id="1004" protId="I1G2U3" geneId="uncharacterized_I1G2U3"/>
        <gene id="1005" protId="I1E5W7" geneId="uncharacterized_I1E5W7"/>
        <gene id="1007" protId="I1F8D9" geneId="LOC100640003"/>
        <gene id="1008" protId="I1GFP6" geneId="LOC100640351"/>
        <gene id="1010" protId="I1FMC3" geneId="LOC100632039"/>
        <gene id="1013" protId="I1GED6" geneId="LOC100633243"/>
        <gene id="1014" protId="I1G4R9" geneId="LOC100632026"/>
        <gene id="1016" protId="I1FIU0" geneId="LOC100637257"/>
        <gene id="1018" protId="I1FQ22" geneId="LOC100631490"/>
        <gene id="1020" protId="I1EYR8" geneId="LOC100636804"/>
        <gene id="1021" protId="I1GEJ7" geneId="uncharacterized_I1GEJ7"/>
        <gene id="1022" protId="I1EWL0" geneId="LOC100635459"/>
        <gene id="1024" protId="I1F9B0" geneId="uncharacterized_I1F9B0"/>
        <gene id="1026" protId="I1G229" geneId="LOC100633337"/>
        <gene id="1028" protId="I1FMQ2" geneId="LOC100632797"/>
        <gene id="1030" protId="I1FYS2" geneId="LOC100632790"/>
        <gene id="1032" protId="I1G4B6" geneId="LOC100641417"/>
        <gene id="1034" protId="I1GHK7" geneId="LOC100640905"/>
        <gene id="1036" protId="I1EBX3" geneId="uncharacterized_I1EBX3"/>
        <gene id="1040" protId="I1GDE8" geneId="LOC100636269"/>
        <gene id="1041" protId="I1F055" geneId="LOC100640213"/>
        <gene id="1043" protId="I1E7V7" geneId="LOC100632601"/>
        <gene id="1045" protId="I1EE53" geneId="uncharacterized_I1EE53"/>
        <gene id="1047" protId="I1GBV8" geneId="LOC100641918"/>
        <gene id="1049" protId="I1G0S5" geneId="LOC100633423"/>
        <gene id="1051" protId="I1EX33" geneId="uncharacterized_I1EX33"/>
        <gene id="1052" protId="I1F1P5" geneId="uncharacterized_I1F1P5"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.queenslandica" link="http://www.uniprot.org/taxonomy/400682"/>
    </notes>
  </species>
  <species name="Korarchaeum cryptofilum " NCBITaxId="374847">
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    </database>
    <notes>
      <additionalInformation abbreviation="K.cryptofilum" link="http://www.uniprot.org/taxonomy/374847"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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