<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2604" inparalogs="7413"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="A.oligospora" link="http://www.uniprot.org/taxonomy/756982"/>
    </notes>
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        <gene id="7069" protId="I3K348" geneId="ZNF2"/>
        <gene id="7070" protId="I3JC81" geneId="LOC100691538"/>
        <gene id="7071" protId="I3J6U7" geneId="ZNF513 (2 of 2)"/>
        <gene id="7072" protId="I3KY10" geneId="GTF3A (1 of 2)"/>
        <gene id="7073" protId="I3JK07" geneId="LOC100701904"/>
        <gene id="7074" protId="I3J0S0" geneId="VEZF1 (2 of 2)"/>
        <gene id="7075" protId="I3KUS4" geneId="LOC100712486"/>
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        <gene id="7079" protId="I3JEC2" geneId="LOC100706907"/>
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        <gene id="7082" protId="I3J7K5" geneId="LOC100695253"/>
        <gene id="7084" protId="I3IU14" geneId="LOC100705880"/>
        <gene id="7085" protId="I3JYC0" geneId="LOC100700369"/>
        <gene id="7087" protId="I3J4Y6" geneId="uncharacterized_I3J4Y6"/>
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        <gene id="7090" protId="I3K024" geneId="LOC100701705"/>
        <gene id="7091" protId="I3KGH0" geneId="PARG (1 of 2)"/>
        <gene id="7093" protId="I3IZ93" geneId="LOC100706070"/>
        <gene id="7095" protId="I3JV86" geneId="LOC100694614"/>
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        <gene id="7112" protId="I3KEB3" geneId="OTP (1 of 2)"/>
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        <gene id="7123" protId="I3JFW6" geneId="LOC100697002"/>
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        <gene id="7126" protId="I3JNA0" geneId="LOC100690917"/>
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        <gene id="7129" protId="I3J046" geneId="LOC100709156"/>
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        <gene id="7142" protId="I3KI49" geneId="LOC100711612"/>
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        <gene id="7146" protId="I3KP17" geneId="LOC100534455"/>
        <gene id="7147" protId="I3IWF0" geneId="LOC100699693"/>
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        <gene id="7166" protId="I3JD12" geneId="LOC100712085"/>
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        <gene id="7172" protId="I3KRD6" geneId="uncharacterized_I3KRD6"/>
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        <gene id="7240" protId="I3JLU7" geneId="LOC100711484"/>
        <gene id="7241" protId="I3KZG8" geneId="LOC100711990"/>
        <gene id="7242" protId="I3K0S4" geneId="LOC100703381"/>
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        <gene id="7244" protId="I3KZS9" geneId="LOC100709791"/>
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        <gene id="7246" protId="I3IYZ3" geneId="LOC100696942"/>
        <gene id="7247" protId="I3KTZ3" geneId="LOC100710049"/>
        <gene id="7248" protId="I3KH08" geneId="uncharacterized_I3KH08"/>
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        <gene id="7257" protId="I3JU85" geneId="LOC100710989"/>
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        <gene id="7266" protId="I3K1I5" geneId="LOC100707422"/>
        <gene id="7267" protId="I3K809" geneId="LOC100701403"/>
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        <gene id="7277" protId="I3KHY3" geneId="uncharacterized_I3KHY3"/>
        <gene id="7278" protId="I3JWC8" geneId="uncharacterized_I3JWC8"/>
        <gene id="7279" protId="I3KLU5" geneId="LOC100708751"/>
        <gene id="7280" protId="I3JS49" geneId="LOC100691423"/>
        <gene id="7281" protId="I3KR20" geneId="LOC100699360"/>
        <gene id="7282" protId="I3KYX8" geneId="LOC100708838"/>
        <gene id="7283" protId="I3KXI8" geneId="LOC100705001"/>
        <gene id="7284" protId="I3JM64" geneId="LOC100690491"/>
        <gene id="7285" protId="I3JSE4" geneId="uncharacterized_I3JSE4"/>
        <gene id="7286" protId="I3KLU4" geneId="LOC100708482"/>
        <gene id="7287" protId="I3KGV6" geneId="LOC100704355"/>
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        <gene id="7289" protId="I3KQ10" geneId="LOC100709088"/>
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        <gene id="7295" protId="I3KJL9" geneId="LOC100708566"/>
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        <gene id="7297" protId="I3KY74" geneId="LOC100691506"/>
        <gene id="7298" protId="I3KZR9" geneId="LOC100712414"/>
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        <gene id="7300" protId="I3KYN4" geneId="LOC100694914"/>
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        <gene id="7309" protId="I3JLY6" geneId="LOC100705356"/>
        <gene id="7310" protId="I3K3P8" geneId="LOC100702478"/>
        <gene id="7311" protId="I3KVF2" geneId="LOC100690692"/>
        <gene id="7312" protId="I3JXE2" geneId="LOC100699895"/>
        <gene id="7313" protId="I3K342" geneId="LOC100702208"/>
        <gene id="7314" protId="I3KXH9" geneId="LOC100705677"/>
        <gene id="7315" protId="I3K9Y7" geneId="uncharacterized_I3K9Y7"/>
        <gene id="7316" protId="I3K4E9" geneId="LOC100692955"/>
        <gene id="7317" protId="I3KNT7" geneId="LOC100693358"/>
        <gene id="7318" protId="I3JLZ4" geneId="LOC100705621"/>
        <gene id="7319" protId="I3J5R1" geneId="TRIM25 (3 of 3)"/>
        <gene id="7320" protId="I3JS23" geneId="LOC100709497"/>
        <gene id="7321" protId="I3JMI5" geneId="LOC100694917"/>
        <gene id="7322" protId="I3KIQ4" geneId="LOC100707630"/>
        <gene id="7323" protId="I3J2F2" geneId="LOC100709600"/>
        <gene id="7324" protId="I3JI62" geneId="LOC100697663"/>
        <gene id="7325" protId="I3JWD3" geneId="uncharacterized_I3JWD3"/>
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        <gene id="7327" protId="I3KXX0" geneId="LOC100693598"/>
        <gene id="7328" protId="I3IUV5" geneId="LOC100694728"/>
        <gene id="7329" protId="I3JIV4" geneId="uncharacterized_I3JIV4"/>
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        <gene id="7332" protId="I3KZI0" geneId="uncharacterized_I3KZI0"/>
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        <gene id="7334" protId="I3JP52" geneId="uncharacterized_I3JP52"/>
        <gene id="7335" protId="I3KUZ6" geneId="LOC100708051"/>
        <gene id="7336" protId="I3JXX3" geneId="uncharacterized_I3JXX3"/>
        <gene id="7337" protId="I3KUA0" geneId="LOC100692313"/>
        <gene id="7338" protId="I3IV87" geneId="uncharacterized_I3IV87"/>
        <gene id="7339" protId="I3JCG0" geneId="LOC100709965"/>
        <gene id="7340" protId="I3K279" geneId="MID1 (2 of 2)"/>
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        <gene id="7342" protId="I3KEQ7" geneId="uncharacterized_I3KEQ7"/>
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        <gene id="7344" protId="I3JLY2" geneId="uncharacterized_I3JLY2"/>
        <gene id="7345" protId="I3JK53" geneId="uncharacterized_I3JK53"/>
        <gene id="7346" protId="I3JVA3" geneId="uncharacterized_I3JVA3"/>
        <gene id="7347" protId="I3KSG1" geneId="LOC100698413"/>
        <gene id="7348" protId="I3KEA4" geneId="uncharacterized_I3KEA4"/>
        <gene id="7349" protId="I3JBW4" geneId="uncharacterized_I3JBW4"/>
        <gene id="7350" protId="I3KPK5" geneId="LOC100701318"/>
        <gene id="7351" protId="I3JJL6" geneId="uncharacterized_I3JJL6"/>
        <gene id="7352" protId="I3JAG3" geneId="LOC100699835"/>
        <gene id="7353" protId="I3JUJ6" geneId="uncharacterized_I3JUJ6"/>
        <gene id="7354" protId="I3J6D3" geneId="LOC100695296"/>
        <gene id="7355" protId="I3JSW0" geneId="LOC100710124"/>
        <gene id="7356" protId="I3IUW0" geneId="LOC100694987"/>
        <gene id="7357" protId="I3KZT9" geneId="LOC100700239"/>
        <gene id="7358" protId="I3KFL3" geneId="TRIM8"/>
        <gene id="7370" protId="I3JV52" geneId="LOC100698124"/>
        <gene id="7371" protId="I3KBV0" geneId="KLHDC10 (2 of 2)"/>
        <gene id="7373" protId="I3JAT6" geneId="LOC100701460"/>
        <gene id="7375" protId="I3JGR9" geneId="LOC100697466"/>
        <gene id="7377" protId="I3JWI2" geneId="LOC100697473"/>
        <gene id="7379" protId="I3K6L4" geneId="LOC100690573"/>
        <gene id="7383" protId="I3KJP3" geneId="LOC100711235"/>
        <gene id="7384" protId="I3JLD6" geneId="LOC100702669"/>
        <gene id="7386" protId="I3JS57" geneId="LOC100712114"/>
        <gene id="7388" protId="I3KC35" geneId="LOC100698024"/>
        <gene id="7390" protId="I3KX68" geneId="LOC100711887"/>
        <gene id="7392" protId="I3JSD9" geneId="LOC100699277"/>
        <gene id="7394" protId="I3IUG0" geneId="LOC100700862"/>
        <gene id="7396" protId="I3JZK6" geneId="LOC100704757"/>
        <gene id="7400" protId="I3K7F2" geneId="TPMT (2 of 2)"/>
        <gene id="7403" protId="I3K354" geneId="LOC100691908"/>
        <gene id="7405" protId="I3JUC3" geneId="LOC100712529"/>
        <gene id="7407" protId="I3KN30" geneId="LOC100705153"/>
        <gene id="7409" protId="I3KMA8" geneId="LOC100703473"/>
        <gene id="7410" protId="I3JDD3" geneId="uncharacterized_I3JDD3"/>
        <gene id="7411" protId="I3KDX5" geneId="uncharacterized_I3KDX5"/>
        <gene id="7413" protId="I3IZE2" geneId="LOC100699556"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="O.niloticus" link="http://www.uniprot.org/taxonomy/8128"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="4466"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3539"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2151"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
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