<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2147" inparalogs="5492"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="A.oligospora" link="http://www.uniprot.org/taxonomy/756982"/>
    </notes>
  </species>
  <species name="Crassostrea gigas " NCBITaxId="29159">
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        <gene id="5449" protId="K1S2H0" geneId="CGI_10021394"/>
        <gene id="5450" protId="K1QX75" geneId="CGI_10021395"/>
        <gene id="5451" protId="K1R6X4" geneId="CGI_10021396"/>
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        <gene id="5465" protId="K1R006" geneId="CGI_10017031"/>
        <gene id="5467" protId="K1RWD8" geneId="CGI_10024584"/>
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        <gene id="5474" protId="K1R4C7" geneId="CGI_10005424"/>
        <gene id="5475" protId="K1Q4E7" geneId="CGI_10005426"/>
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        <gene id="5478" protId="K1QNQ7" geneId="CGI_10017345"/>
        <gene id="5479" protId="K1QI58" geneId="CGI_10004032"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.gigas" link="http://www.uniprot.org/taxonomy/29159"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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