<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2215" inparalogs="9029"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Apis mellifera " NCBITaxId="7460">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="9" protId="H9KHN0" geneId="uncharacterized_H9KHN0"/>
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        <gene id="13" protId="H9K353" geneId="SF3B3"/>
        <gene id="15" protId="H9KAJ2" geneId="alphaCop"/>
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        <gene id="20" protId="H9KEM3" geneId="ade2"/>
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        <gene id="26" protId="H9KSL5" geneId="TER94"/>
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        <gene id="47" protId="H9KBI8" geneId="LOC551493"/>
        <gene id="49" protId="H9KKI2" geneId="LOC412282"/>
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    <notes>
      <additionalInformation abbreviation="A.mellifera" link="http://www.uniprot.org/taxonomy/7460"/>
    </notes>
  </species>
  <species name="Solanum tuberosum " NCBITaxId="4113">
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        <gene id="8941" protId="P48502" geneId="uncharacterized_P48502"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.tuberosum" link="http://www.uniprot.org/taxonomy/4113"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1717"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1508"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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