<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="335" inparalogs="1078"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ailuropoda melanoleuca " NCBITaxId="9646">
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        <gene id="3" protId="G1MCZ1" geneId="POLR2A"/>
        <gene id="5" protId="G1MAF6" geneId="LOC100470305"/>
        <gene id="8" protId="G1MDX2" geneId="ABCE1"/>
        <gene id="10" protId="G1M4C5" geneId="IARS"/>
        <gene id="12" protId="D2I042" geneId="EEF2"/>
        <gene id="13" protId="G1MJ97" geneId="EFTUD2"/>
        <gene id="15" protId="G1M221" geneId="ATP6V1B2"/>
        <gene id="16" protId="D2H0D7" geneId="ATP6V1B1"/>
        <gene id="18" protId="D2HMA6" geneId="ATP6V1A"/>
        <gene id="20" protId="D2HHB0" geneId="C22orf28"/>
        <gene id="22" protId="G1LMH6" geneId="LOC100469825"/>
        <gene id="23" protId="G1LAS7" geneId="LOC100470231"/>
        <gene id="24" protId="G1LKL7" geneId="uncharacterized_G1LKL7"/>
        <gene id="25" protId="G1LSY9" geneId="LOC100476280"/>
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        <gene id="28" protId="G1LCE2" geneId="LOC100466579"/>
        <gene id="29" protId="G1M8M0" geneId="LOC100474924"/>
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        <gene id="1064" protId="G1LUG9" geneId="LOC100470618"/>
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    <notes>
      <additionalInformation abbreviation="A.melanoleuca" link="http://www.uniprot.org/taxonomy/9646"/>
    </notes>
  </species>
  <species name="Korarchaeum cryptofilum " NCBITaxId="374847">
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    <notes>
      <additionalInformation abbreviation="K.cryptofilum" link="http://www.uniprot.org/taxonomy/374847"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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