<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="313" inparalogs="854"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Anolis carolinensis " NCBITaxId="28377">
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        <gene id="5" protId="G1KK90" geneId="CPS1"/>
        <gene id="7" protId="G1KGH1" geneId="ACSS2"/>
        <gene id="9" protId="G1KT22" geneId="ATP5B"/>
        <gene id="11" protId="G1KMR9" geneId="ATP5A1"/>
        <gene id="13" protId="H9GL04" geneId="LONP2"/>
        <gene id="15" protId="G1KUT8" geneId="VARS2"/>
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        <gene id="21" protId="G1KKR0" geneId="TKT"/>
        <gene id="22" protId="G1KMS6" geneId="LOC100553828"/>
        <gene id="24" protId="G1KAI3" geneId="ATP2C1"/>
        <gene id="25" protId="H9GDC9" geneId="ATP2C2"/>
        <gene id="27" protId="L7N020" geneId="LOC100554969"/>
        <gene id="28" protId="H9GUW4" geneId="atp1a2"/>
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        <gene id="30" protId="H9GG73" geneId="ATP4A"/>
        <gene id="31" protId="H9GMX2" geneId="uncharacterized_H9GMX2"/>
        <gene id="32" protId="H9GFY6" geneId="ATP12A"/>
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        <gene id="36" protId="H9G6Z3" geneId="AARS"/>
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        <gene id="45" protId="H9GA61" geneId="TUFM"/>
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        <gene id="99" protId="G1KD44" geneId="aco2"/>
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        <gene id="124" protId="H9GG09" geneId="GAPDHS"/>
        <gene id="125" protId="H9GBL1" geneId="LOC100564080"/>
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        <gene id="195" protId="H9GGN6" geneId="LOC100564559"/>
        <gene id="196" protId="G1KWE1" geneId="uncharacterized_G1KWE1"/>
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        <gene id="200" protId="G1KQY1" geneId="UROD"/>
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        <gene id="207" protId="G1KL48" geneId="MTHFD2L"/>
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    <notes>
      <additionalInformation abbreviation="A.carolinensis" link="http://www.uniprot.org/taxonomy/28377"/>
    </notes>
  </species>
  <species name="Thermodesulfovibrio yellowstonii " NCBITaxId="289376">
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    </database>
    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
    </notes>
  </species>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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