<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2559" inparalogs="7628"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Anolis carolinensis " NCBITaxId="28377">
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        <gene id="6333" protId="G1KPG0" geneId="LASP1"/>
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        <gene id="6339" protId="H9GM09" geneId="SLC31A1"/>
        <gene id="6341" protId="G1KAI0" geneId="LOC100561560"/>
        <gene id="6342" protId="G1KAI2" geneId="uncharacterized_G1KAI2"/>
        <gene id="6346" protId="G1KB36" geneId="LOC100553237"/>
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        <gene id="7101" protId="G1KI07" geneId="uncharacterized_G1KI07"/>
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        <gene id="7140" protId="H9GMT2" geneId="uncharacterized_H9GMT2"/>
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        <gene id="7143" protId="G1KN64" geneId="uncharacterized_G1KN64"/>
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        <gene id="7489" protId="H9G3T5" geneId="LOC100556525"/>
        <gene id="7490" protId="H9G5V2" geneId="LOC100558354"/>
        <gene id="7491" protId="H9G5L4" geneId="LOC100557826"/>
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        <gene id="7499" protId="H9GS21" geneId="LOC100556857"/>
        <gene id="7500" protId="G1KB86" geneId="LOC100556505"/>
        <gene id="7501" protId="H9GBS6" geneId="VAMP1"/>
        <gene id="7502" protId="H9G9T2" geneId="VAMP3"/>
        <gene id="7503" protId="H9GVR0" geneId="VAMP8"/>
        <gene id="7505" protId="G1KN19" geneId="CBX3"/>
        <gene id="7506" protId="G1KFI8" geneId="CBX1"/>
        <gene id="7507" protId="G1KNP3" geneId="CBX5"/>
        <gene id="7509" protId="H9GPT6" geneId="TTR"/>
        <gene id="7511" protId="H9GHR3" geneId="PSMG3"/>
        <gene id="7513" protId="H9GNA5" geneId="TOMM40"/>
        <gene id="7515" protId="H9GAA6" geneId="EMC8"/>
        <gene id="7517" protId="L7MZY6" geneId="LOC100558714"/>
        <gene id="7518" protId="G1KVW2" geneId="LOC100553762"/>
        <gene id="7519" protId="G1KV01" geneId="LOC100553563"/>
        <gene id="7520" protId="G1KJU8" geneId="uncharacterized_G1KJU8"/>
        <gene id="7521" protId="G1KM33" geneId="uncharacterized_G1KM33"/>
        <gene id="7522" protId="L7N007" geneId="uncharacterized_L7N007"/>
        <gene id="7523" protId="G1KHY6" geneId="LOC100562277"/>
        <gene id="7524" protId="G1KV81" geneId="uncharacterized_G1KV81"/>
        <gene id="7525" protId="G1KM56" geneId="uncharacterized_G1KM56"/>
        <gene id="7526" protId="G1KK66" geneId="LOC100559320"/>
        <gene id="7527" protId="L7MZN5" geneId="LOC100567059"/>
        <gene id="7528" protId="G1KK47" geneId="LOC100559519"/>
        <gene id="7529" protId="G1KK44" geneId="LOC100560116"/>
        <gene id="7530" protId="G1KGD3" geneId="uncharacterized_G1KGD3"/>
        <gene id="7531" protId="G1KGG3" geneId="LOC100567846"/>
        <gene id="7532" protId="L7MZQ5" geneId="uncharacterized_L7MZQ5"/>
        <gene id="7533" protId="G1KP47" geneId="uncharacterized_G1KP47"/>
        <gene id="7534" protId="G1KX25" geneId="uncharacterized_G1KX25"/>
        <gene id="7535" protId="H9GCM8" geneId="uncharacterized_H9GCM8"/>
        <gene id="7536" protId="H9G3X6" geneId="uncharacterized_H9G3X6"/>
        <gene id="7537" protId="G1KLQ7" geneId="uncharacterized_G1KLQ7"/>
        <gene id="7538" protId="H9GTC7" geneId="LOC100553809"/>
        <gene id="7539" protId="G1KGE3" geneId="uncharacterized_G1KGE3"/>
        <gene id="7540" protId="G1KYB2" geneId="uncharacterized_G1KYB2"/>
        <gene id="7541" protId="H9G3J3" geneId="uncharacterized_H9G3J3"/>
        <gene id="7542" protId="H9G8W2" geneId="uncharacterized_H9G8W2"/>
        <gene id="7543" protId="G1KGD9" geneId="uncharacterized_G1KGD9"/>
        <gene id="7544" protId="H9GLQ3" geneId="LOC100560396"/>
        <gene id="7545" protId="H9GRQ5" geneId="uncharacterized_H9GRQ5"/>
        <gene id="7546" protId="G1KUV2" geneId="uncharacterized_G1KUV2"/>
        <gene id="7547" protId="H9GP23" geneId="uncharacterized_H9GP23"/>
        <gene id="7548" protId="H9GP22" geneId="uncharacterized_H9GP22"/>
        <gene id="7549" protId="H9G681" geneId="LOC100553874"/>
        <gene id="7550" protId="G1KRK8" geneId="uncharacterized_G1KRK8"/>
        <gene id="7551" protId="H9GCY9" geneId="uncharacterized_H9GCY9"/>
        <gene id="7552" protId="G1KFS8" geneId="LOC100557756"/>
        <gene id="7553" protId="G1KP74" geneId="TRIM13"/>
        <gene id="7554" protId="G1KCM7" geneId="TRIM8"/>
        <gene id="7555" protId="H9GPP8" geneId="TRIM63"/>
        <gene id="7556" protId="G1KG92" geneId="TRIM59"/>
        <gene id="7557" protId="G1KGR1" geneId="TRIM47"/>
        <gene id="7559" protId="H9G5F7" geneId="ZC3HC1"/>
        <gene id="7562" protId="G1KNN6" geneId="uncharacterized_G1KNN6"/>
        <gene id="7564" protId="G1KB33" geneId="C5orf63"/>
        <gene id="7566" protId="H9GB10" geneId="BOLA3"/>
        <gene id="7568" protId="H9G7F9" geneId="DAP3"/>
        <gene id="7570" protId="H9G7T3" geneId="LOC100556028"/>
        <gene id="7571" protId="G1KC62" geneId="CNDP2"/>
        <gene id="7572" protId="G1KC31" geneId="CNDP1"/>
        <gene id="7574" protId="H9GAT9" geneId="KNDC1"/>
        <gene id="7577" protId="H9GAI9" geneId="ARG2"/>
        <gene id="7579" protId="H9GHH4" geneId="CACNG5"/>
        <gene id="7580" protId="H9GNB9" geneId="CACNG7"/>
        <gene id="7581" protId="H9G3D4" geneId="CACNG4"/>
        <gene id="7582" protId="G1KSE5" geneId="CACNG2"/>
        <gene id="7583" protId="H9GNB4" geneId="uncharacterized_H9GNB4"/>
        <gene id="7585" protId="G1KCD1" geneId="uncharacterized_G1KCD1"/>
        <gene id="7587" protId="G1KM38" geneId="MED21"/>
        <gene id="7589" protId="G1KG90" geneId="TIMM10"/>
        <gene id="7591" protId="H9G7V2" geneId="UQCRQ"/>
        <gene id="7593" protId="H9GT61" geneId="uncharacterized_H9GT61"/>
        <gene id="7594" protId="H9GND3" geneId="uncharacterized_H9GND3"/>
        <gene id="7595" protId="H9G9F7" geneId="uncharacterized_H9G9F7"/>
        <gene id="7596" protId="L7MZV4" geneId="uncharacterized_L7MZV4"/>
        <gene id="7598" protId="H9GNN7" geneId="LOC100564034"/>
        <gene id="7599" protId="H9GP21" geneId="LOC100560606"/>
        <gene id="7602" protId="H9G733" geneId="CHTF8"/>
        <gene id="7604" protId="H9G9A4" geneId="KLHDC8B"/>
        <gene id="7605" protId="G1KQ14" geneId="KLHDC8A"/>
        <gene id="7606" protId="H9GGU6" geneId="uncharacterized_H9GGU6"/>
        <gene id="7611" protId="H9G9R7" geneId="LOC100556718"/>
        <gene id="7613" protId="H9GED2" geneId="DPM3"/>
        <gene id="7615" protId="G1KA99" geneId="KCTD1"/>
        <gene id="7616" protId="H9GJZ3" geneId="LOC100565659"/>
        <gene id="7621" protId="H9G5E1" geneId="C17orf103"/>
        <gene id="7624" protId="H9G6H0" geneId="PCTP"/>
        <gene id="7625" protId="H9GMT5" geneId="STARD7"/>
        <gene id="7626" protId="H9GM64" geneId="LOC100552471"/>
        <gene id="7627" protId="G1KL34" geneId="LOC100561438"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.carolinensis" link="http://www.uniprot.org/taxonomy/28377"/>
    </notes>
  </species>
  <species name="Polysphondylium pallidum " NCBITaxId="13642">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="6" protId="D3B0N0" geneId="mdn1"/>
        <gene id="8" protId="D3BJK4" geneId="rpb1"/>
        <gene id="11" protId="D3BNB1" geneId="chcA"/>
        <gene id="13" protId="D3BVM0" geneId="ascc3l"/>
        <gene id="15" protId="D3BMV7" geneId="PPL_12530"/>
        <gene id="18" protId="D3BI99" geneId="accA"/>
        <gene id="20" protId="D3BM55" geneId="mtr"/>
        <gene id="22" protId="D3BB35" geneId="pyr1-3"/>
        <gene id="24" protId="D3B936" geneId="rpc2"/>
        <gene id="26" protId="D3BG64" geneId="dnapkcs"/>
        <gene id="28" protId="D3BKC8" geneId="rpc1"/>
        <gene id="30" protId="D3AVT3" geneId="dhx8"/>
        <gene id="32" protId="D3BHD6" geneId="rpb2"/>
        <gene id="34" protId="D3AYJ5" geneId="PPL_01255"/>
        <gene id="37" protId="D3BKT1" geneId="xdh"/>
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        <gene id="42" protId="D3BIX9" geneId="cdcD"/>
        <gene id="44" protId="D3BBT9" geneId="sf3b1"/>
        <gene id="46" protId="D3BUX1" geneId="ileS"/>
        <gene id="48" protId="D3BFE8" geneId="dnajc13"/>
        <gene id="50" protId="D3BU68" geneId="efbA"/>
        <gene id="53" protId="D3B2A8" geneId="atp9b"/>
        <gene id="55" protId="D3AWX9" geneId="gcvP"/>
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        <gene id="71" protId="D3BFQ2" geneId="eftud2"/>
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        <gene id="75" protId="D3BTY9" geneId="aco2"/>
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        <gene id="79" protId="D3B7Q6" geneId="PPL_04494"/>
        <gene id="81" protId="D3B015" geneId="leuS"/>
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        <gene id="86" protId="D3BLH3" geneId="tor"/>
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        <gene id="98" protId="D3BG39" geneId="xpo1"/>
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        <gene id="105" protId="D3B545" geneId="PPL_03556"/>
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        <gene id="135" protId="D3BPX3" geneId="valS1"/>
        <gene id="140" protId="D3BJ98" geneId="PPL_08623"/>
        <gene id="143" protId="D3B1P3" geneId="isw"/>
        <gene id="145" protId="D3BJH7" geneId="lvsA"/>
        <gene id="151" protId="D3BBA2" geneId="PPL_05289"/>
        <gene id="153" protId="D3B6F6" geneId="dhx16"/>
        <gene id="156" protId="D3BMZ2" geneId="PPL_12566"/>
        <gene id="158" protId="D3AZB7" geneId="abcE1"/>
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        <gene id="168" protId="D3BM96" geneId="mvpB"/>
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        <gene id="176" protId="D3B6X4" geneId="ogdh"/>
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        <gene id="206" protId="D3BSF9" geneId="elp3"/>
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        <gene id="210" protId="D3BC39" geneId="copB"/>
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        <gene id="216" protId="D3B5K0" geneId="nadsyn1"/>
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        <gene id="220" protId="D3BUH1" geneId="PPL_11791"/>
        <gene id="222" protId="D3B1G6" geneId="eftud1"/>
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        <gene id="233" protId="D3B5K4" geneId="polZ"/>
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        <gene id="304" protId="D3BC24" geneId="cas1"/>
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        <gene id="339" protId="D3BUF5" geneId="ap2a1-2"/>
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        <gene id="364" protId="D3BUD3" geneId="vatM"/>
        <gene id="365" protId="D3BUC4" geneId="PPL_11743"/>
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        <gene id="378" protId="D3B1R9" geneId="PPL_02243"/>
        <gene id="380" protId="D3BUA7" geneId="mmsdh"/>
        <gene id="382" protId="D3B255" geneId="eif2G"/>
        <gene id="384" protId="D3BQ18" geneId="acly"/>
        <gene id="386" protId="D3BB83" geneId="rvb2"/>
        <gene id="388" protId="D3B0W9" geneId="manA"/>
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        <gene id="6778" protId="D3B513" geneId="bub2"/>
        <gene id="6780" protId="D3B6B4" geneId="ssr3"/>
        <gene id="6782" protId="D3B5P8" geneId="PPL_03986"/>
        <gene id="6784" protId="D3BHC6" geneId="PPL_07928"/>
        <gene id="6786" protId="D3BAI6" geneId="atox1"/>
        <gene id="6788" protId="D3BTS8" geneId="lyrm5"/>
        <gene id="6799" protId="D3BM93" geneId="fslA"/>
        <gene id="6800" protId="D3BU13" geneId="fscH"/>
        <gene id="6801" protId="D3BR87" geneId="fslK"/>
        <gene id="6802" protId="D3AYT6" geneId="fslC"/>
        <gene id="6803" protId="D3BVK3" geneId="fslF"/>
        <gene id="6804" protId="D3BUC6" geneId="fscC"/>
        <gene id="6807" protId="D3BH63" geneId="PPL_07865"/>
        <gene id="6810" protId="D3B400" geneId="tmem170"/>
        <gene id="6812" protId="D3BEI4" geneId="PPL_07146"/>
        <gene id="6814" protId="D3AZW4" geneId="PPL_01578"/>
        <gene id="6816" protId="D3BHP4" geneId="srp14-2"/>
        <gene id="6824" protId="D3BI39" geneId="hbx10"/>
        <gene id="6827" protId="D3B0R1" geneId="PPL_01878"/>
        <gene id="6829" protId="D3B5Z0" geneId="PPL_04078"/>
        <gene id="6831" protId="D3BF66" geneId="PPL_06599"/>
        <gene id="6833" protId="D3BDR1" geneId="PPL_06863"/>
        <gene id="6835" protId="D3BSV6" geneId="PPL_11076"/>
        <gene id="6837" protId="D3BEH1" geneId="lyrm4"/>
        <gene id="7251" protId="D3BPC3" geneId="PPL_09888"/>
        <gene id="7252" protId="D3BVK9" geneId="PPL_00010"/>
        <gene id="7253" protId="D3BQ46" geneId="PPL_10027"/>
        <gene id="7254" protId="D3BGW4" geneId="PPL_07766"/>
        <gene id="7255" protId="D3B306" geneId="PPL_02771"/>
        <gene id="7256" protId="D3B6D4" geneId="PPL_03682"/>
        <gene id="7257" protId="D3B290" geneId="PPL_02499"/>
        <gene id="7258" protId="D3BIU1" geneId="PPL_08176"/>
        <gene id="7259" protId="D3BNM2" geneId="PPL_09725"/>
        <gene id="7260" protId="D3BPR4" geneId="PPL_09931"/>
        <gene id="7261" protId="D3BPR5" geneId="PPL_09932"/>
        <gene id="7262" protId="D3B756" geneId="PPL_04291"/>
        <gene id="7263" protId="D3BP82" geneId="PPL_09845"/>
        <gene id="7264" protId="D3BPF3" geneId="PPL_09421"/>
        <gene id="7265" protId="D3BF18" geneId="PPL_07335"/>
        <gene id="7266" protId="D3B2X6" geneId="PPL_02740"/>
        <gene id="7267" protId="D3B8R4" geneId="PPL_04857"/>
        <gene id="7268" protId="D3B2C4" geneId="PPL_02534"/>
        <gene id="7269" protId="D3B284" geneId="PPL_02492"/>
        <gene id="7270" protId="D3B4G3" geneId="PPL_03288"/>
        <gene id="7271" protId="D3BAI1" geneId="PPL_05558"/>
        <gene id="7272" protId="D3B275" geneId="PPL_02482"/>
        <gene id="7273" protId="D3BH87" geneId="PPL_07889"/>
        <gene id="7274" protId="D3BPC4" geneId="PPL_09889"/>
        <gene id="7275" protId="D3BH85" geneId="PPL_07887"/>
        <gene id="7276" protId="D3BDH7" geneId="PPL_06560"/>
        <gene id="7277" protId="D3B274" geneId="PPL_02481"/>
        <gene id="7278" protId="D3B4J8" geneId="PPL_03323"/>
        <gene id="7279" protId="D3B4B4" geneId="PPL_03236"/>
        <gene id="7280" protId="D3BNN6" geneId="PPL_09739"/>
        <gene id="7281" protId="D3B4C2" geneId="PPL_03244"/>
        <gene id="7282" protId="D3BFZ5" geneId="PPL_07446"/>
        <gene id="7283" protId="D3B4C6" geneId="PPL_03248"/>
        <gene id="7284" protId="D3BHA7" geneId="PPL_07909"/>
        <gene id="7285" protId="D3B257" geneId="PPL_02464"/>
        <gene id="7286" protId="D3AYL8" geneId="PPL_01278"/>
        <gene id="7287" protId="D3BH82" geneId="PPL_07884"/>
        <gene id="7288" protId="D3B3Q5" geneId="PPL_03023"/>
        <gene id="7289" protId="D3BA38" geneId="PPL_05412"/>
        <gene id="7290" protId="D3BS29" geneId="PPL_10821"/>
        <gene id="7291" protId="D3B635" geneId="PPL_04126"/>
        <gene id="7292" protId="D3B4G1" geneId="nagD"/>
        <gene id="7293" protId="D3BRY4" geneId="PPL_10774"/>
        <gene id="7294" protId="D3BRZ9" geneId="PPL_10789"/>
        <gene id="7295" protId="D3BRZ7" geneId="PPL_10787"/>
        <gene id="7395" protId="D3AZ06" geneId="PPL_01346"/>
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        <gene id="7397" protId="D3B9Z8" geneId="PPL_05369"/>
        <gene id="7402" protId="D3BKF2" geneId="PPL_09033"/>
        <gene id="7405" protId="D3B9E2" geneId="PPL_05086"/>
        <gene id="7407" protId="D3B3B9" geneId="PPL_02885"/>
        <gene id="7409" protId="D3BHK8" geneId="PPL_08011"/>
        <gene id="7411" protId="D3BKI1" geneId="PPL_09062"/>
        <gene id="7413" protId="D3BEA7" geneId="mrpl21"/>
        <gene id="7415" protId="D3AZK0" geneId="rtnlc"/>
        <gene id="7417" protId="D3B6V1" geneId="pop5"/>
        <gene id="7424" protId="D3AYF7" geneId="gnt10"/>
        <gene id="7425" protId="D3BCK1" geneId="gnt9"/>
        <gene id="7426" protId="D3B3Z6" geneId="gnt11"/>
        <gene id="7429" protId="D3B653" geneId="PPL_04144"/>
        <gene id="7431" protId="D3B385" geneId="PPL_02851"/>
        <gene id="7433" protId="D3BBI5" geneId="PPL_05853"/>
        <gene id="7436" protId="D3BCC4" geneId="PPL_06149"/>
        <gene id="7437" protId="D3BCC5" geneId="gtaC"/>
        <gene id="7438" protId="D3BM69" geneId="gtaL"/>
        <gene id="7439" protId="D3BMK9" geneId="gtaK"/>
        <gene id="7443" protId="D3BAX1" geneId="PPL_05702"/>
        <gene id="7447" protId="D3BKU2" geneId="PPL_09174"/>
        <gene id="7449" protId="D3AVN3" geneId="PPL_00148"/>
        <gene id="7451" protId="D3B7L3" geneId="PPL_04451"/>
        <gene id="7453" protId="D3AXD0" geneId="PPL_00761"/>
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        <gene id="7461" protId="D3BJL0" geneId="PPL_08738"/>
        <gene id="7463" protId="D3BUS3" geneId="PPL_11895"/>
        <gene id="7478" protId="D3BV06" geneId="PPL_11978"/>
        <gene id="7479" protId="D3BT17" geneId="PPL_11138"/>
        <gene id="7480" protId="D3BJN1" geneId="PPL_08759"/>
        <gene id="7481" protId="D3BVB0" geneId="PPL_11636"/>
        <gene id="7484" protId="D3B2Y3" geneId="med20"/>
        <gene id="7486" protId="D3BNR6" geneId="PPL_09587"/>
        <gene id="7488" protId="D3BHE1" geneId="PPL_07943"/>
        <gene id="7494" protId="D3B0Q5" geneId="PPL_01872"/>
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        <gene id="7496" protId="D3BRN6" geneId="PPL_10647"/>
        <gene id="7497" protId="D3BLG4" geneId="PPL_09398"/>
        <gene id="7498" protId="D3BG55" geneId="PPL_07506"/>
        <gene id="7504" protId="D3B4M2" geneId="sybB"/>
        <gene id="7508" protId="D3BKN9" geneId="hcpC"/>
        <gene id="7510" protId="D3B0P5" geneId="PPL_01862"/>
        <gene id="7512" protId="D3BCG6" geneId="psmG3"/>
        <gene id="7514" protId="D3BDZ5" geneId="tom40"/>
        <gene id="7516" protId="D3BSK2" geneId="PPL_10971"/>
        <gene id="7558" protId="D3B3F0" geneId="PPL_02918"/>
        <gene id="7560" protId="D3BBQ3" geneId="PPL_05922"/>
        <gene id="7561" protId="D3BPD8" geneId="PPL_09903"/>
        <gene id="7563" protId="D3B3Q0" geneId="PPL_03018"/>
        <gene id="7565" protId="D3BNY0" geneId="PPL_09651"/>
        <gene id="7567" protId="D3B3Z9" geneId="PPL_03120"/>
        <gene id="7569" protId="D3BJG2" geneId="PPL_08688"/>
        <gene id="7573" protId="D3AXB9" geneId="argE"/>
        <gene id="7575" protId="D3B370" geneId="gefA"/>
        <gene id="7576" protId="D3BF19" geneId="PPL_07336"/>
        <gene id="7578" protId="D3BL89" geneId="PPL_09321"/>
        <gene id="7584" protId="D3BQ89" geneId="PPL_10072"/>
        <gene id="7586" protId="D3AXS2" geneId="mocs2s"/>
        <gene id="7588" protId="D3BEA9" geneId="PPL_07065"/>
        <gene id="7590" protId="D3BKA6" geneId="timm10"/>
        <gene id="7592" protId="D3B5W4" geneId="uqcrq"/>
        <gene id="7597" protId="D3B5Y5" geneId="PPL_04073"/>
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        <gene id="7601" protId="D3BDE0" geneId="PPL_06523"/>
        <gene id="7603" protId="D3AYC1" geneId="PPL_01181"/>
        <gene id="7607" protId="D3AZ81" geneId="PPL_01421"/>
        <gene id="7608" protId="D3B2S2" geneId="PPL_02686"/>
        <gene id="7609" protId="D3BT73" geneId="PPL_11366"/>
        <gene id="7610" protId="D3BEG2" geneId="PPL_07121"/>
        <gene id="7612" protId="D3B1N1" geneId="pgl"/>
        <gene id="7614" protId="D3BV65" geneId="dpm3"/>
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    <notes>
      <additionalInformation abbreviation="P.pallidum" link="http://www.uniprot.org/taxonomy/13642"/>
    </notes>
  </species>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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